INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1540 ACC RF03919 DESC mir-1540 microRNA precursor family STATES 181 NODES 38 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:22:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03919/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.566406 CKSUM 795544250 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 94.10 NC 44.80 EFP7GF -5.8638 0.72612 ECMLC 0.64793 -5.08365 3.71540 1600000 359046 0.003342 ECMGC 0.46131 -15.87310 -2.54194 1600000 187442 0.002134 ECMLI 0.64703 -3.78836 4.63408 1600000 279195 0.004298 ECMGI 0.48431 -11.42002 0.10299 1600000 106109 0.003770 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -6.721 -7.966 -0.090 -4.420 IL 1 1 2 1 4 1 5 76 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - C - - MR 3 2 3 5 3 1 8 75 94 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 4 2 3 5 3 0 1 73 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 6 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - A - - MR 6 5 3 8 5 1 7 74 93 -6.968 -0.043 -6.783 -6.995 -7.887 1.648 -2.081 -1.742 -1.596 D 7 5 3 8 5 0 1 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 4 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 57 G C - - MP 9 8 3 13 6 2 8 73 92 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 10 8 3 13 6 1 2 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 2 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 56 A U - - MP 15 14 6 19 6 2 8 71 90 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 16 14 6 19 6 1 2 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 55 U A - - MP 21 20 6 25 6 2 8 69 88 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 22 20 6 25 6 1 2 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 54 U A - - MP 27 26 6 31 6 2 7 67 86 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 28 26 6 31 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 53 C G - - MP 33 32 6 37 6 2 7 65 84 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 34 32 6 37 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 52 C G - - MP 39 38 6 43 6 2 6 63 82 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 40 38 6 43 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 51 A U - - MP 45 44 6 49 6 2 6 61 80 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 46 44 6 49 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 50 U A - - MP 51 50 6 55 6 2 6 59 78 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 52 50 6 55 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 49 g u - - MP 57 56 6 61 6 2 5 57 76 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.437 -2.279 -3.587 1.237 -4.156 -4.887 0.202 -3.637 -3.302 1.599 -3.814 2.865 -0.159 -4.128 -1.738 -2.329 ML 58 56 6 61 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 48 G C - - MP 63 62 6 67 6 2 5 55 74 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 64 62 6 67 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 47 A U - - MP 69 68 6 73 6 2 5 53 72 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 70 68 6 73 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 46 G C - - MP 75 74 6 79 6 2 4 51 70 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 76 74 6 79 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 45 C G - - MP 81 80 6 85 4 2 2 49 68 -6.791 -6.998 -0.059 -5.412 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 82 80 6 85 4 1 1 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 48 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 47 67 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 50 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - A - - - ML 87 86 6 89 3 1 1 46 65 -8.220 -0.021 -6.537 1.648 -2.081 -1.742 -1.596 D 88 86 6 89 3 0 0 45 64 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 44 - C - - MR 90 89 3 92 5 1 1 45 64 -6.968 -0.043 -6.783 -6.995 -7.887 -1.395 1.516 -2.205 -0.880 D 91 89 3 92 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 43 u g - - MP 93 92 3 97 6 2 2 44 63 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.801 -3.709 -3.569 -0.073 -2.421 -4.043 1.857 -3.165 -3.607 0.172 -3.930 -1.719 1.051 -3.913 2.795 -2.493 ML 94 92 3 97 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 42 A U - - MP 99 98 6 103 6 2 2 42 61 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 100 98 6 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 41 U A - - MP 105 104 6 109 6 2 2 40 59 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 106 104 6 109 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 40 G C - - MP 111 110 6 115 4 2 2 38 57 -6.791 -6.998 -0.059 -5.412 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 112 110 6 115 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - - - ML 117 116 6 119 5 1 1 36 55 -6.968 -0.043 -6.783 -6.995 -7.887 -1.395 1.516 -2.205 -0.880 D 118 116 6 119 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 119 119 3 119 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 39 U A - - MP 120 119 3 124 6 2 2 35 54 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 121 119 3 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 38 C G - - MP 126 125 6 130 6 2 2 33 52 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 127 125 6 130 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 37 u g - - MP 132 131 6 136 4 2 2 31 50 -6.791 -6.998 -0.059 -5.412 -3.801 -3.709 -3.569 -0.073 -2.421 -4.043 1.857 -3.165 -3.607 0.172 -3.930 -1.719 1.051 -3.913 2.795 -2.493 ML 133 131 6 136 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - G - - - ML 138 137 6 140 3 1 1 28 47 -7.819 -0.023 -6.473 -1.270 -2.439 1.641 -1.824 D 139 137 6 140 3 0 0 27 46 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - G - - - ML 141 140 3 143 3 1 1 27 46 -8.220 -0.021 -6.537 -1.270 -2.439 1.641 -1.824 D 142 140 3 143 3 0 0 26 44 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 36 - U - - MR 144 143 3 146 3 1 1 26 45 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 145 143 3 146 3 0 0 24 43 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 35 - A - - MR 147 146 3 149 5 1 1 25 43 -6.968 -0.043 -6.783 -6.995 -7.887 1.648 -2.081 -1.742 -1.596 D 148 146 3 149 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 34 C G - - MP 150 149 3 154 6 2 2 24 42 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 151 149 3 154 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 33 u g - - MP 156 155 6 160 6 2 2 22 40 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.801 -3.709 -3.569 -0.073 -2.421 -4.043 1.857 -3.165 -3.607 0.172 -3.930 -1.719 1.051 -3.913 2.795 -2.493 ML 157 155 6 160 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 32 C G - - MP 162 161 6 166 4 2 2 20 38 -6.791 -6.998 -0.059 -5.412 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 163 161 6 166 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - U - - - ML 168 167 6 170 3 1 1 16 35 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 169 167 6 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - C - - - ML 171 170 3 173 3 1 1 15 33 -7.819 -0.023 -6.473 -1.395 1.516 -2.205 -0.880 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - U - - - ML 174 173 3 176 3 1 1 13 32 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - G - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.270 -2.439 1.641 -1.824 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1540 ACC RF03919 DESC mir-1540 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:22:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03919/CM NSEQ 2 EFFN 1.824219 CKSUM 795544250 STATS LOCAL MSV -7.9843 0.72612 STATS LOCAL VITERBI -9.1044 0.72612 STATS LOCAL FORWARD -3.4313 0.72612 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57603 1.37028 1.24066 1.38639 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.40981 2.95564 0.21946 2.89739 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.46937 2.46344 1.61295 2.40616 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.68864 1.70116 2.40599 0.41646 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.68941 1.70117 2.40628 0.41634 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.93040 0.31537 2.67103 1.91107 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.93017 0.31540 2.67093 1.91103 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.46902 2.46434 1.61302 2.40756 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.68880 1.70116 2.40605 0.41643 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.80700 2.62474 0.38204 2.51422 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.41491 2.96092 0.21803 2.90495 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.46914 2.46402 1.61299 2.40707 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.41467 2.96066 0.21810 2.90459 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.92815 0.31570 2.67006 1.91071 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.20742 2.97349 2.72407 2.65085 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.69306 1.45389 2.45140 0.49022 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.46893 2.46457 1.61304 2.40792 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.69074 1.70119 2.40679 0.41612 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.41665 2.96271 0.21755 2.90752 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.52520 0.27955 3.09393 2.13273 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.69001 1.70118 2.40651 0.41624 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.93194 0.31514 2.67169 1.91131 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.69693 1.45370 2.45298 0.48964 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.42180 3.25800 0.20590 2.83261 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.42180 3.25800 0.20590 2.83261 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.92739 0.31581 2.66973 1.91059 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.69638 1.45373 2.45276 0.48972 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.93230 0.31509 2.67185 1.91137 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.36441 2.37103 2.87021 0.27982 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.52520 0.27955 3.09393 2.13273 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.36441 2.37103 2.87021 0.27982 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.42180 3.25800 0.20590 2.83261 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.18743 2.84019 0.27236 2.69119 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.96204 2.62782 0.35560 2.44833 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.18925 2.84240 0.27167 2.69404 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.20742 2.97349 2.72407 2.65085 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.36441 2.37103 2.87021 0.27982 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.95914 2.62413 0.35714 2.44367 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.18257 2.83429 0.27421 2.68359 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.47500 2.58030 1.53787 2.43584 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.12379 0.25499 2.79438 2.12084 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47298 2.58672 1.53795 2.44447 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.64266 1.87754 2.28087 0.39502 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.96267 2.62863 0.35526 2.44935 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.52520 0.27955 3.09393 2.13273 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.18431 2.83640 0.27355 2.68631 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.11588 0.25593 2.79115 2.11931 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.63576 1.87705 2.27864 0.39620 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.11663 0.25584 2.79146 2.11945 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.72996 1.68711 2.42904 0.41309 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.47361 2.58472 1.53792 2.44178 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.63702 1.87714 2.27904 0.39599 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.18543 2.83776 0.27312 2.68806 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.18576 2.83817 0.27299 2.68858 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.47329 2.58574 1.53794 2.44314 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.47316 2.58615 1.53794 2.44370 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.64106 1.87743 2.28036 0.39529 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.12845 0.25443 2.79628 2.12174 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.20742 2.97349 2.72407 2.65085 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.52520 0.27955 3.09393 2.13273 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //