INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4077 ACC RF03897 DESC mir-4077 microRNA precursor family STATES 172 NODES 39 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:38:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03897/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.041992 CKSUM 270705170 NULL 0.000 0.000 0.000 0.000 GA 83.00 TC 83.70 NC 45.20 EFP7GF -8.5909 0.71999 ECMLC 0.60220 -5.37341 4.21496 1600000 386217 0.003107 ECMGC 0.48764 -12.48001 0.55382 1600000 230341 0.001737 ECMLI 0.57426 -4.15742 5.30992 1600000 275628 0.004354 ECMGI 0.51828 -8.29597 3.23181 1600000 157330 0.002542 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 90 -6.993 -7.200 -0.051 -5.614 IL 1 1 2 1 4 1 5 75 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 5 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 5 71 90 -8.394 -0.018 -6.712 1.737 -2.457 -2.080 -2.008 D 4 2 3 5 3 0 0 70 89 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 3 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 56 - A - - MR 6 5 3 8 5 1 5 70 89 -7.130 -0.038 -6.946 -7.158 -8.050 1.737 -2.457 -2.080 -2.008 D 7 5 3 8 5 0 0 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 55 A U - - MP 9 8 3 13 6 2 6 69 88 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.870 -2.881 -3.883 3.380 -4.260 -5.330 0.045 -3.920 -3.771 0.993 -4.323 -0.345 -0.372 -4.505 -1.896 -2.712 ML 10 8 3 13 6 1 1 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 54 G C - - MP 15 14 6 19 6 2 6 67 86 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.828 -3.135 -4.936 0.142 -5.354 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.524 -2.739 -3.811 ML 16 14 6 19 6 1 1 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 53 U A - - MP 21 20 6 25 6 2 5 65 84 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 22 20 6 25 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 52 U A - - MP 27 26 6 31 6 2 5 63 82 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 28 26 6 31 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 51 G C - - MP 33 32 6 37 6 2 4 61 80 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.828 -3.135 -4.936 0.142 -5.354 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.524 -2.739 -3.811 ML 34 32 6 37 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 50 G C - - MP 39 38 6 43 6 2 4 59 78 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.899 -2.645 -3.931 0.853 -4.586 -4.530 -0.053 -4.273 -3.841 3.190 -4.251 1.205 -0.336 -3.929 -2.025 -2.823 ML 40 38 6 43 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 49 A U - - MP 45 44 6 49 4 2 2 57 76 -6.993 -7.200 -0.051 -5.614 -3.870 -2.881 -3.883 3.380 -4.260 -5.330 0.045 -3.920 -3.771 0.993 -4.323 -0.345 -0.372 -4.505 -1.896 -2.712 ML 46 44 6 49 4 1 1 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 6 53 3 1 1 55 74 -8.007 -0.020 -6.661 1.737 -2.457 -2.080 -2.008 D 52 50 6 53 3 0 0 53 73 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - a - - - ML 54 53 3 56 3 1 1 53 73 -8.394 -0.018 -6.712 0.317 -0.848 -0.043 0.296 D 55 53 3 56 3 0 0 52 71 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 48 - C - - MR 57 56 3 59 5 1 1 52 72 -7.130 -0.038 -6.946 -7.158 -8.050 -1.844 1.651 -2.671 -1.237 D 58 56 3 59 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 47 U A - - MP 60 59 3 64 6 2 2 51 71 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 61 59 3 64 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 46 u g - - MP 66 65 6 70 6 2 2 49 69 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.589 -3.582 -3.479 0.039 -2.481 -4.047 1.794 -3.184 -3.510 0.251 -3.899 -1.673 2.081 -3.744 2.248 -2.421 ML 67 65 6 70 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 45 G U - - MP 72 71 6 76 6 2 2 47 67 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.672 -2.424 -3.843 1.099 -4.605 -5.330 -0.199 -3.859 -3.490 1.282 -4.015 3.139 -0.557 -4.525 -2.142 -2.532 ML 73 71 6 76 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 44 A U - - MP 78 77 6 82 6 2 2 45 65 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.870 -2.881 -3.883 3.380 -4.260 -5.330 0.045 -3.920 -3.771 0.993 -4.323 -0.345 -0.372 -4.505 -1.896 -2.712 ML 79 77 6 82 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 43 U A - - MP 84 83 6 88 6 2 2 43 63 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 85 83 6 88 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 42 U A - - MP 90 89 6 94 6 2 2 41 61 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 91 89 6 94 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 41 G U - - MP 96 95 6 100 6 2 2 39 59 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.672 -2.424 -3.843 1.099 -4.605 -5.330 -0.199 -3.859 -3.490 1.282 -4.015 3.139 -0.557 -4.525 -2.142 -2.532 ML 97 95 6 100 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 40 A U - - MP 102 101 6 106 6 2 2 37 57 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.870 -2.881 -3.883 3.380 -4.260 -5.330 0.045 -3.920 -3.771 0.993 -4.323 -0.345 -0.372 -4.505 -1.896 -2.712 ML 103 101 6 106 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 39 C G - - MP 108 107 6 112 6 2 2 35 55 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.560 -4.319 -0.783 -3.016 -4.719 3.580 -3.836 -4.372 -0.557 -4.622 -2.509 0.488 -4.709 -0.725 -3.208 ML 109 107 6 112 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 38 U A - - MP 114 113 6 118 6 2 2 33 53 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.292 -4.120 -4.119 -0.407 -3.039 -4.674 1.291 -3.742 -4.123 -0.168 -4.491 -2.016 3.375 -4.440 -0.713 -2.937 ML 115 113 6 118 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 37 G C - - MP 120 119 6 124 6 2 2 31 51 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.828 -3.135 -4.936 0.142 -5.354 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.524 -2.739 -3.811 ML 121 119 6 124 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 36 G C - - MP 126 125 6 130 4 2 2 29 49 -6.993 -7.200 -0.051 -5.614 -4.828 -3.135 -4.936 0.142 -5.354 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.524 -2.739 -3.811 ML 127 125 6 130 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - G - - - ML 132 131 6 134 3 1 1 27 46 -8.007 -0.020 -6.661 -1.671 -2.905 1.743 -2.292 D 133 131 6 134 3 0 0 26 45 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - U - - - ML 135 134 3 137 3 1 1 26 45 -8.007 -0.020 -6.661 -1.564 -1.547 -2.302 1.640 D 136 134 3 137 3 0 0 25 44 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - u - - - ML 138 137 3 140 3 1 1 25 43 -8.007 -0.020 -6.661 -0.432 -0.905 -0.090 0.836 D 139 137 3 140 3 0 0 23 42 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - U - - - ML 141 140 3 143 3 1 1 23 42 -8.007 -0.292 -2.480 -1.564 -1.547 -2.302 1.640 D 142 140 3 143 3 0 0 22 41 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - u - - - ML 144 143 3 146 3 1 1 22 41 -7.739 -0.024 -6.393 -0.531 0.341 -1.284 0.705 D 145 143 3 146 3 0 0 21 40 -7.560 -0.442 -1.951 IL 146 146 3 146 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - G - - - ML 147 146 3 149 3 1 1 21 40 -8.007 -0.020 -6.661 -1.671 -2.905 1.743 -2.292 D 148 146 3 149 3 0 0 20 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - A - - - ML 150 149 3 152 3 1 1 20 39 -8.007 -0.020 -6.661 1.737 -2.457 -2.080 -2.008 D 151 149 3 152 3 0 0 19 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - A - - - ML 153 152 3 155 3 1 1 19 37 -8.007 -0.020 -6.661 1.737 -2.457 -2.080 -2.008 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - A - - - ML 156 155 3 158 3 1 1 17 36 -8.007 -0.020 -6.661 1.737 -2.457 -2.080 -2.008 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - u - - - ML 159 158 3 161 3 1 1 16 35 -8.007 -0.020 -6.661 -0.769 0.122 -1.532 0.985 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - a - - - ML 162 161 3 164 3 1 1 15 33 -8.007 -0.020 -6.661 0.996 -1.432 0.117 -0.863 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - - - ML 165 164 3 167 3 1 1 13 31 -8.007 -0.020 -6.661 -1.564 -1.547 -2.302 1.640 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - A - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 1.737 -2.457 -2.080 -2.008 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4077 ACC RF03897 DESC mir-4077 microRNA precursor family LENG 56 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:38:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03897/CM NSEQ 3 EFFN 2.774414 CKSUM 270705170 STATS LOCAL MSV -8.3532 0.71999 STATS LOCAL VITERBI -8.5345 0.71999 STATS LOCAL FORWARD -3.5320 0.71999 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19262 1.74196 1.47201 1.23123 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.12511 3.43797 3.14298 3.16254 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.26811 3.02283 2.01068 2.94473 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.71646 3.44293 0.14163 3.38199 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.20490 2.07871 2.97794 0.24405 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.20334 2.07859 2.97720 0.24420 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.71395 3.43969 0.14212 3.37755 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.13998 2.89622 0.27005 2.75245 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.26876 3.01953 2.00996 2.94015 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.12511 3.43797 3.14298 3.16254 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 1.16238 2.04019 1.39263 1.17495 10 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.20263 2.07854 2.97686 0.24427 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.74982 1.57000 2.53735 0.43242 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.01298 3.10001 0.26235 2.95422 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.26854 3.02066 2.01021 2.94172 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.20107 2.07842 2.97612 0.24441 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.20000 2.07834 2.97561 0.24452 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.01214 3.09807 0.26278 2.95177 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.26887 3.01899 2.00985 2.93940 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.39624 0.19596 3.19755 2.26732 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.19698 2.07810 2.97417 0.24480 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.71094 3.43584 0.14270 3.37226 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.71072 3.43556 0.14274 3.37188 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.90174 3.80562 0.11792 3.37971 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.79795 2.73032 3.32226 0.17698 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 1.78820 2.11792 1.42796 0.74938 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.79795 2.73032 3.32226 0.17698 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.25529 3.95124 1.57949 1.46634 0.26236 1.09861 0.40547 27 1.86344 1.09584 2.39994 0.86779 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04845 3.74440 3.74440 1.46634 0.26236 0.17112 1.84973 28 2.90174 3.80562 0.11792 3.37971 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.12511 3.43797 3.14298 3.16254 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 0.12511 3.43797 3.14298 3.16254 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.12511 3.43797 3.14298 3.16254 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.07286 1.27132 2.61455 0.65294 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.64254 2.54566 1.27135 2.16134 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.79795 2.73032 3.32226 0.17698 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.12511 3.43797 3.14298 3.16254 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.56019 0.17001 3.27387 2.40734 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.56091 0.16996 3.27420 2.40748 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.27757 3.16145 1.91474 2.94435 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.54539 3.36413 0.16901 3.15899 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.16131 2.32696 2.82849 0.22197 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.15614 2.07234 2.89235 0.25351 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.27723 3.16353 1.91503 2.94676 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.27709 3.16441 1.91515 2.94778 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.16749 2.32786 2.83101 0.22135 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.16404 2.07296 2.89589 0.25272 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 1.20888 2.70241 0.59069 2.51975 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 0.27587 3.17194 1.91619 2.95650 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 3.08691 0.15879 3.66168 2.58371 48 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 3.16285 2.32719 2.82912 0.22182 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.98215 0.49244 2.70943 1.30339 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 3.57170 0.16916 3.27918 2.40951 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 0.27683 3.16603 1.91537 2.94965 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 0.27657 3.16763 1.91560 2.95151 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 3.58660 0.16807 3.28600 2.41229 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 3.18123 2.32983 2.83659 0.21999 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 0.12511 3.43797 3.14298 3.16254 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //