INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4178 ACC RF03885 DESC mir-4178 microRNA precursor family STATES 184 NODES 44 CLEN 60 W 76 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:45:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03885/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.777344 CKSUM 4290415088 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 93.40 NC 57.30 EFP7GF -5.4461 0.72797 ECMLC 0.64200 -5.06968 3.83601 1600000 364960 0.003288 ECMGC 0.40327 -15.81725 -1.23663 1600000 143111 0.002795 ECMLI 0.63078 -3.61098 5.10938 1600000 293814 0.004084 ECMGI 0.45898 -10.36213 1.72887 1600000 102842 0.003889 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 76 95 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 IL 1 1 2 1 6 1 9 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 10 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 60 U A - - MP 3 2 3 7 6 2 14 76 95 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 4 2 3 7 6 1 7 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 9 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 9 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 59 G C - - MP 9 8 6 13 6 2 13 74 93 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 10 8 6 13 6 1 7 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 6 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 58 C G - - MP 15 14 6 19 6 2 12 72 91 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 16 14 6 19 6 1 6 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 57 A U - - MP 21 20 6 25 6 2 11 70 89 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 22 20 6 25 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 56 A U - - MP 27 26 6 31 6 2 10 68 87 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 28 26 6 31 6 1 5 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 55 A U - - MP 33 32 6 37 6 2 8 66 85 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 34 32 6 37 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 54 C G - - MP 39 38 6 43 4 2 7 64 83 -6.884 -7.091 -0.056 -5.505 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 40 38 6 43 4 1 3 64 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 62 82 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 5 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 45 44 6 47 3 1 5 61 81 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 46 44 6 47 3 0 0 60 79 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 48 47 3 50 3 1 5 60 80 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 49 47 3 50 3 0 0 59 78 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 51 50 3 53 3 1 4 59 78 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 52 50 3 53 3 0 0 58 77 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 3 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 54 53 3 56 3 1 3 58 77 -8.300 -0.019 -6.617 1.692 -2.253 -1.897 -1.784 D 55 53 3 56 3 0 0 57 76 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - C - - MR 57 56 3 59 3 1 3 57 76 -8.300 -0.019 -6.617 -1.599 1.583 -2.418 -1.042 D 58 56 3 59 3 0 0 55 75 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - C - - MR 60 59 3 62 3 1 2 56 75 -8.300 -0.019 -6.617 -1.599 1.583 -2.418 -1.042 D 61 59 3 62 3 0 0 54 74 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - C - - MR 63 62 3 65 3 1 2 55 74 -8.300 -0.019 -6.617 -1.599 1.583 -2.418 -1.042 D 64 62 3 65 3 0 0 53 73 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - A - - MR 66 65 3 68 3 1 2 54 73 -8.300 -0.019 -6.617 1.692 -2.253 -1.897 -1.784 D 67 65 3 68 3 0 0 52 72 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - A - - MR 69 68 3 71 5 1 1 53 72 -7.042 -0.040 -6.857 -7.070 -7.961 1.692 -2.253 -1.897 -1.784 D 70 68 3 71 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 48 u g - - MP 72 71 3 76 6 2 2 52 71 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 73 71 3 76 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 47 C G - - MP 78 77 6 82 6 2 2 50 69 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 79 77 6 82 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 46 A U - - MP 84 83 6 88 6 2 2 48 67 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 85 83 6 88 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 45 G U - - MP 90 89 6 94 6 2 2 46 65 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.543 -2.340 -3.703 1.178 -4.359 -5.084 0.021 -3.737 -3.385 1.457 -3.903 3.002 -0.339 -4.308 -1.921 -2.419 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 44 G C - - MP 96 95 6 100 6 2 2 44 63 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 97 95 6 100 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 43 U A - - MP 102 101 6 106 6 2 2 42 61 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 103 101 6 106 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 42 U A - - MP 108 107 6 112 4 2 2 40 59 -6.884 -7.091 -0.056 -5.505 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 109 107 6 112 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 114 113 6 116 3 1 1 37 57 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 115 113 6 116 3 0 0 36 55 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - - - ML 117 116 3 119 3 1 1 36 55 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 118 116 3 119 3 0 0 35 54 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 41 - U - - MR 120 119 3 122 3 1 1 35 54 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 121 119 3 122 3 0 0 34 53 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 40 - u - - MR 123 122 3 125 3 1 1 34 53 -8.300 -0.019 -6.617 -0.659 0.439 -1.431 0.713 D 124 122 3 125 3 0 0 33 52 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 39 - U - - MR 126 125 3 128 5 1 1 33 52 -7.042 -0.040 -6.857 -7.070 -7.961 -1.377 -1.393 -2.105 1.586 D 127 125 3 128 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 38 A U - - MP 129 128 3 133 6 2 2 32 51 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 130 128 3 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 37 G C - - MP 135 134 6 139 6 2 2 30 49 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 136 134 6 139 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 36 C G - - MP 141 140 6 145 6 2 2 28 47 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 142 140 6 145 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 35 A U - - MP 147 146 6 151 4 2 2 26 45 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 148 146 6 151 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - U - - - ML 153 152 6 155 3 1 1 24 42 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 154 152 6 155 3 0 0 23 41 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - U - - - ML 156 155 3 158 3 1 1 22 41 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 157 155 3 158 3 0 0 21 40 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - A - - - ML 159 158 3 161 3 1 1 21 40 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 160 158 3 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - u - - - ML 162 161 3 164 3 1 1 20 39 -7.905 -0.021 -6.559 -0.659 0.439 -1.431 0.713 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - a - - - ML 165 164 3 167 3 1 1 19 37 -7.905 -0.021 -6.559 0.611 0.236 -1.073 -0.287 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - A - - - ML 168 167 3 170 3 1 1 18 36 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 169 167 3 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - U - - - ML 171 170 3 173 3 1 1 16 35 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - u - - - ML 174 173 3 176 3 1 1 15 33 -7.905 -0.021 -6.559 -0.659 0.439 -1.431 0.713 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - G - - - ML 177 176 3 179 3 1 1 13 32 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - U - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -1.377 -1.393 -2.105 1.586 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4178 ACC RF03885 DESC mir-4178 microRNA precursor family LENG 60 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:45:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03885/CM NSEQ 2 EFFN 1.753906 CKSUM 4290415088 STATS LOCAL MSV -8.0918 0.72797 STATS LOCAL VITERBI -9.0222 0.72797 STATS LOCAL FORWARD -2.9744 0.72797 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44913 1.49417 1.49201 1.15242 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.67731 1.67525 2.37302 0.42957 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.40252 2.93151 0.22293 2.88196 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.90702 0.32580 2.63409 1.88633 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.48945 2.42511 1.58370 2.37133 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.48974 2.42442 1.58366 2.37023 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.48993 2.42394 1.58363 2.36946 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.89621 0.32743 2.62956 1.88465 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.32930 2.34219 2.83314 0.29076 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.32930 2.34219 2.83314 0.29076 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.38057 3.21001 0.21644 2.78437 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.21656 2.93483 2.68930 2.60852 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.65732 1.43740 2.41078 0.50654 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.89317 0.32789 2.62827 1.88417 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.49023 2.42321 1.58359 2.36830 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.79284 2.58622 0.39402 2.47850 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.39220 2.92109 0.22587 2.86687 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.65284 1.67510 2.36400 0.43353 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.65244 1.67510 2.36386 0.43360 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.32930 2.34219 2.83314 0.29076 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.32930 2.34219 2.83314 0.29076 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.49076 2.42191 1.58351 2.36623 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.39161 2.92050 0.22604 2.86601 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.89479 0.32764 2.62896 1.88442 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.49020 2.42328 1.58359 2.36842 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.32930 2.34219 2.83314 0.29076 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.32930 2.34219 2.83314 0.29076 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.21656 2.93483 2.68930 2.60852 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.83783 1.08424 2.37233 0.89302 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.96447 1.22466 2.12564 1.58183 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.21656 2.93483 2.68930 2.60852 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.32930 2.34219 2.83314 0.29076 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.83783 1.08424 2.37233 0.89302 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.38057 3.21001 0.21644 2.78437 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.32930 2.34219 2.83314 0.29076 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.60027 1.84373 2.23875 0.41411 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.15999 2.79704 0.28331 2.65360 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.08918 0.26380 2.75429 2.09819 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.60442 1.84399 2.24006 0.41337 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.32930 2.34219 2.83314 0.29076 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.83783 1.08424 2.37233 0.89302 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.32930 2.34219 2.83314 0.29076 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.49340 2.54185 1.51180 2.40554 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.49331 2.54210 1.51179 2.40588 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.08301 0.26456 2.75181 2.09700 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.69782 1.65572 2.39185 0.43043 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.60130 1.84380 2.23908 0.41392 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.16068 2.79786 0.28304 2.65467 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.94033 2.58719 0.36857 2.41474 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.21656 2.93483 2.68930 2.60852 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.21656 2.93483 2.68930 2.60852 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.47899 0.29346 3.04592 2.09604 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.47899 0.29346 3.04592 2.09604 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.47899 0.29346 3.04592 2.09604 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.15940 2.79634 0.28354 2.65269 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.60155 1.84381 2.23916 0.41388 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.60328 1.84392 2.23970 0.41357 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.60570 1.84407 2.24046 0.41314 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.16420 2.80204 0.28166 2.66014 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.11071 0.26117 2.76287 2.10231 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.48992 2.55248 1.51175 2.42010 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //