INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-725 ACC RF03884 DESC mir-725 microRNA precursor family STATES 172 NODES 37 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 21:10:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03884/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.791992 CKSUM 611209762 NULL 0.000 0.000 0.000 0.000 GA 76.00 TC 76.90 NC 73.70 EFP7GF -7.6674 0.72486 ECMLC 0.65427 -5.37598 3.52896 1600000 406905 0.002949 ECMGC 0.53313 -12.69174 -0.47209 1600000 269988 0.001482 ECMLI 0.63628 -4.40420 4.29093 1600000 303341 0.003956 ECMGI 0.56000 -9.07661 1.96363 1600000 193689 0.002065 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 89 -7.264 -7.471 -0.043 -5.885 IL 1 1 2 1 4 1 1 75 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 1 71 90 -8.633 -0.015 -6.951 0.909 -1.086 -1.228 0.292 D 4 2 3 5 3 0 0 69 88 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 1 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - U - - MR 6 5 3 8 3 1 1 70 89 -8.633 -0.015 -6.951 -2.047 -1.948 -2.804 1.747 D 7 5 3 8 3 0 0 68 87 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 1 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 56 - G - - MR 9 8 3 11 3 1 1 69 88 -8.633 -0.015 -6.951 -2.197 -3.503 1.831 -2.888 D 10 8 3 11 3 0 0 67 86 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 1 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 55 - A - - MR 12 11 3 14 5 1 1 68 87 -7.355 -0.033 -7.170 -7.382 -8.274 1.821 -2.971 -2.544 -2.575 D 13 11 3 14 5 0 0 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 54 G U - - MP 15 14 3 19 6 2 2 67 86 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.998 -2.677 -4.188 0.869 -5.205 -5.974 -0.751 -4.172 -3.772 0.839 -4.320 3.392 -1.093 -5.064 -2.688 -2.826 ML 16 14 3 19 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 53 C G - - MP 21 20 6 25 6 2 2 65 84 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -5.206 -5.167 -4.780 -1.352 -3.370 -5.105 3.712 -4.246 -4.859 -1.188 -5.041 -3.130 0.068 -5.229 -1.100 -3.679 ML 22 20 6 25 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 52 u g - - MP 27 26 6 31 6 2 2 63 82 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.989 -4.005 -3.815 -0.339 -2.696 -4.324 1.600 -3.439 -3.847 -0.168 -4.203 -2.092 2.196 -4.114 2.498 -2.737 ML 28 26 6 31 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 51 A U - - MP 33 32 6 37 6 2 2 61 79 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.352 -3.253 -4.315 3.600 -4.954 -6.084 -0.615 -4.318 -4.200 0.471 -4.774 -0.649 -1.029 -5.166 -2.553 -3.127 ML 34 32 6 37 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 50 G C - - MP 39 38 6 43 6 2 2 59 77 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -5.320 -3.374 -5.497 -0.199 -6.040 -4.911 -1.261 -5.763 -4.684 3.751 -4.984 -1.102 -1.632 -4.840 -3.333 -4.365 ML 40 38 6 43 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 49 a u - - MP 45 44 6 49 6 2 2 57 75 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.705 -2.632 -3.826 2.869 -4.656 -5.358 -0.378 -3.991 -3.635 1.224 -4.207 1.978 -0.594 -4.381 -2.260 -2.614 ML 46 44 6 49 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 48 A U - - MP 51 50 6 55 6 2 2 55 73 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.352 -3.253 -4.315 3.600 -4.954 -6.084 -0.615 -4.318 -4.200 0.471 -4.774 -0.649 -1.029 -5.166 -2.553 -3.127 ML 52 50 6 55 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 47 A U - - MP 57 56 6 61 6 2 2 53 71 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.352 -3.253 -4.315 3.600 -4.954 -6.084 -0.615 -4.318 -4.200 0.471 -4.774 -0.649 -1.029 -5.166 -2.553 -3.127 ML 58 56 6 61 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 46 C G - - MP 63 62 6 67 6 2 2 51 69 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.182 -4.192 -3.951 -0.436 -2.722 -4.415 3.010 -3.496 -3.977 -0.265 -4.307 -2.230 0.855 -4.271 1.840 -2.833 ML 64 62 6 67 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 45 c u - - MP 69 68 6 73 6 2 2 49 67 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.481 -2.680 -3.618 0.841 -3.826 -4.874 0.248 2.418 -3.440 0.842 -3.990 1.934 -0.132 -4.104 -1.610 -2.479 ML 70 68 6 73 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 44 u u - - MP 75 74 6 79 6 2 2 47 65 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.451 -2.599 -3.602 0.923 -4.018 -4.925 0.012 -3.728 -3.422 0.977 -3.983 1.951 -0.280 -4.089 -1.808 2.440 ML 76 74 6 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 43 U A - - MP 81 80 6 85 6 2 2 45 63 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.936 -4.772 -4.687 -1.022 -3.484 -5.181 0.853 -4.226 -4.687 -0.859 -5.022 -2.648 3.593 -5.052 -1.143 -3.421 ML 82 80 6 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 42 G C - - MP 87 86 6 91 6 2 2 43 61 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -5.320 -3.374 -5.497 -0.199 -6.040 -4.911 -1.261 -5.763 -4.684 3.751 -4.984 -1.102 -1.632 -4.840 -3.333 -4.365 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 41 c u - - MP 93 92 6 97 6 2 2 41 59 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.481 -2.680 -3.618 0.841 -3.826 -4.874 0.248 2.418 -3.440 0.842 -3.990 1.934 -0.132 -4.104 -1.610 -2.479 ML 94 92 6 97 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 40 C G - - MP 99 98 6 103 6 2 2 39 57 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -5.206 -5.167 -4.780 -1.352 -3.370 -5.105 3.712 -4.246 -4.859 -1.188 -5.041 -3.130 0.068 -5.229 -1.100 -3.679 ML 100 98 6 103 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 39 U A - - MP 105 104 6 109 6 2 2 37 55 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.936 -4.772 -4.687 -1.022 -3.484 -5.181 0.853 -4.226 -4.687 -0.859 -5.022 -2.648 3.593 -5.052 -1.143 -3.421 ML 106 104 6 109 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 38 G C - - MP 111 110 6 115 6 2 2 35 53 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -5.320 -3.374 -5.497 -0.199 -6.040 -4.911 -1.261 -5.763 -4.684 3.751 -4.984 -1.102 -1.632 -4.840 -3.333 -4.365 ML 112 110 6 115 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 37 A U - - MP 117 116 6 121 6 2 2 33 51 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.352 -3.253 -4.315 3.600 -4.954 -6.084 -0.615 -4.318 -4.200 0.471 -4.774 -0.649 -1.029 -5.166 -2.553 -3.127 ML 118 116 6 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 36 G U - - MP 123 122 6 127 6 2 2 31 49 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -3.998 -2.677 -4.188 0.869 -5.205 -5.974 -0.751 -4.172 -3.772 0.839 -4.320 3.392 -1.093 -5.064 -2.688 -2.826 ML 124 122 6 127 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 35 A U - - MP 129 128 6 133 6 2 2 28 47 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -4.352 -3.253 -4.315 3.600 -4.954 -6.084 -0.615 -4.318 -4.200 0.471 -4.774 -0.649 -1.029 -5.166 -2.553 -3.127 ML 130 128 6 133 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 34 U A - - MP 135 134 6 139 4 2 2 26 45 -7.264 -7.471 -0.043 -5.885 -4.936 -4.772 -4.687 -1.022 -3.484 -5.181 0.853 -4.226 -4.687 -0.859 -5.022 -2.648 3.593 -5.052 -1.143 -3.421 ML 136 134 6 139 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - G - - - ML 141 140 6 143 3 1 1 24 42 -8.260 -0.017 -6.914 -2.197 -3.503 1.831 -2.888 D 142 140 6 143 3 0 0 23 42 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - u - - - ML 144 143 3 146 3 1 1 23 41 -8.260 -0.017 -6.914 0.262 -1.003 -1.301 0.923 D 145 143 3 146 3 0 0 22 41 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - g - - - ML 147 146 3 149 3 1 1 21 40 -8.260 -0.017 -6.914 0.415 -1.781 0.957 -1.204 D 148 146 3 149 3 0 0 21 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - c - - - ML 150 149 3 152 3 1 1 20 39 -8.260 -0.017 -6.914 -0.619 0.714 -0.009 -0.484 D 151 149 3 152 3 0 0 20 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - u - - - ML 153 152 3 155 3 1 1 19 38 -8.260 -0.017 -6.914 0.318 0.033 -1.146 0.354 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - G - - - ML 156 155 3 158 3 1 1 18 36 -8.260 -0.017 -6.914 0.289 -1.836 1.057 -1.260 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - a - - - ML 159 158 3 161 3 1 1 16 35 -2.351 -0.330 -6.914 0.981 -0.041 -1.317 -0.617 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 16 35 -2.074 -0.462 -4.774 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - u - - - ML 162 161 3 164 3 1 1 15 33 -8.260 -0.017 -6.914 0.318 0.033 -1.146 0.354 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - G - - - ML 165 164 3 167 3 1 1 13 31 -8.260 -0.017 -6.914 0.289 -1.836 1.057 -1.260 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - G - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 0.274 -1.843 1.068 -1.268 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-725 ACC RF03884 DESC mir-725 microRNA precursor family LENG 56 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 21:10:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03884/CM NSEQ 3 EFFN 2.915039 CKSUM 611209762 STATS LOCAL MSV -8.1630 0.72486 STATS LOCAL VITERBI -8.6651 0.72486 STATS LOCAL FORWARD -3.2482 0.72486 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42665 1.68862 1.28457 1.20950 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.74936 2.15402 2.25308 1.18339 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.04259 3.15916 0.25044 3.00808 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.46818 0.18325 3.27229 2.31929 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.78945 1.59454 2.58043 0.41581 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.24955 3.09796 2.06605 3.01542 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.75286 3.49831 0.13489 3.43586 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.73046 2.91665 0.92104 2.71668 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.24983 3.09642 2.06571 3.01332 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.24990 3.09603 2.06562 3.01279 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.85525 0.64857 2.64627 1.05340 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.03549 0.86624 1.01925 2.43055 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 1.98235 2.66209 0.98376 0.87096 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.26944 2.13515 3.05472 0.22739 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.74970 3.49417 0.13548 3.43020 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.03518 0.86636 1.01933 2.43011 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.45614 0.18424 3.26612 2.31708 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.26836 2.13506 3.05420 0.22749 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.74922 3.49354 0.13557 3.42934 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.25019 3.09444 2.06526 3.01060 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.04063 3.15455 0.25139 3.00230 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.25021 3.09435 2.06524 3.01048 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.26779 2.13501 3.05392 0.22754 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.96132 3.87228 0.11032 3.44540 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 1.20429 2.09750 2.30443 0.73915 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 1.09705 2.64900 0.71315 2.25067 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 1.83643 0.87808 1.38777 1.74067 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 1.16449 1.35947 2.19204 1.14120 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 1.18656 2.68770 0.64346 2.29046 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.69764 1.41021 2.31951 1.83366 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.25348 1.58635 3.95124 0.17836 1.81180 1.09861 0.40547 30 1.16449 1.35947 2.19204 1.14120 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 1.18656 2.68770 0.64346 2.29046 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 1.19714 2.69261 0.63576 2.29552 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.25798 3.24182 1.97147 3.01503 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 3.22880 2.38903 2.90292 0.20602 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.20229 2.12058 2.94716 0.23968 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.22903 2.38907 2.90302 0.20600 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.61289 0.16178 3.33307 2.44509 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.25793 3.24217 1.97152 3.01544 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.59475 3.43197 0.15889 3.22071 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.65170 2.09631 2.32158 0.34469 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.61446 0.16167 3.33381 2.44538 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.25783 3.24285 1.97162 3.01622 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.73203 2.01203 2.46294 0.33406 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.65263 2.09645 2.32190 0.34453 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.05345 2.80786 0.30317 2.61860 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.23342 2.38974 2.90486 0.20559 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 3.23457 2.38991 2.90534 0.20548 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 2.92758 1.86563 2.71097 0.32130 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 3.62622 0.16085 3.33930 2.44760 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 3.24023 2.39077 2.90770 0.20495 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 1.18293 2.74466 0.59443 2.55782 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 2.60311 3.44438 0.15704 3.23504 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 3.22639 2.12263 2.95812 0.23741 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 0.11736 3.49797 3.19742 3.22881 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.96132 3.87228 0.11032 3.44540 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.85537 2.77825 3.38151 0.16686 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //