INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2834 ACC RF03869 DESC mir-2834 microRNA precursor family STATES 193 NODES 45 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 21:42:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03869/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.472656 CKSUM 1259204630 NULL 0.000 0.000 0.000 0.000 GA 87.00 TC 87.00 NC 86.80 EFP7GF -6.4163 0.72383 ECMLC 0.64047 -6.04844 3.14655 1600000 433299 0.002769 ECMGC 0.47767 -15.15389 -3.16478 1600000 122802 0.003257 ECMLI 0.63913 -3.99921 4.29331 1600000 240395 0.004992 ECMGI 0.49021 -11.06885 -0.21930 1600000 81634 0.004900 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.747 -6.954 -0.061 -5.369 IL 1 1 2 1 4 1 17 83 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 17 79 99 -7.779 -0.023 -6.433 -1.152 -1.209 -1.866 1.508 D 4 2 3 5 3 0 12 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 16 78 98 -7.779 -0.023 -6.433 -1.303 1.481 -2.108 -0.807 D 7 5 3 8 3 0 11 77 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 15 77 97 -7.779 -0.023 -6.433 -1.303 1.481 -2.108 -0.807 D 10 8 3 11 3 0 10 76 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 14 76 96 -7.779 -0.023 -6.433 1.625 -2.002 -1.671 -1.510 D 13 11 3 14 3 0 10 75 95 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 14 75 95 -8.182 -0.021 -6.500 -1.185 -2.339 1.613 -1.723 D 16 14 3 17 3 0 9 74 94 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 13 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - G - - MR 18 17 3 20 3 1 13 74 94 -8.182 -0.021 -6.500 -1.185 -2.339 1.613 -1.723 D 19 17 3 20 3 0 7 72 92 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 12 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - C - - MR 21 20 3 23 3 1 12 73 93 -8.182 -0.021 -6.500 -1.303 1.481 -2.108 -0.807 D 22 20 3 23 3 0 6 71 91 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 61 - A - - MR 24 23 3 26 3 1 12 72 92 -8.182 -0.021 -6.500 1.625 -2.002 -1.671 -1.510 D 25 23 3 26 3 0 5 70 90 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 27 26 3 29 3 1 11 71 91 -8.182 -0.021 -6.500 1.625 -2.002 -1.671 -1.510 D 28 26 3 29 3 0 4 70 89 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 9 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - A - - MR 30 29 3 32 5 1 11 70 90 -6.933 -0.044 -6.749 -6.961 -7.852 1.625 -2.002 -1.671 -1.510 D 31 29 3 32 5 0 3 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 8 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 58 c g - - MP 33 32 3 37 6 2 12 69 89 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.486 -3.450 -3.363 0.189 -2.339 -3.914 2.651 -3.049 -3.392 0.443 -3.772 -1.520 1.258 -3.626 1.750 -2.291 ML 34 32 3 37 6 1 5 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 5 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 1 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 57 G C - - MP 39 38 6 43 6 2 11 67 87 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.384 -2.925 -4.457 0.432 -4.728 -4.549 -0.180 -4.669 -4.084 3.539 -4.449 -0.614 -0.576 -4.231 -2.199 -3.340 ML 40 38 6 43 6 1 5 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 5 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 56 G C - - MP 45 44 6 49 6 2 10 65 85 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.384 -2.925 -4.457 0.432 -4.728 -4.549 -0.180 -4.669 -4.084 3.539 -4.449 -0.614 -0.576 -4.231 -2.199 -3.340 ML 46 44 6 49 6 1 4 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 55 A U - - MP 51 50 6 55 6 2 9 63 83 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.503 -2.612 -3.539 3.104 -3.737 -4.777 0.546 -3.598 -3.446 1.392 -3.979 -0.140 0.126 -4.012 -1.397 -2.393 ML 52 50 6 55 6 1 4 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 54 u g - - MP 57 56 6 61 6 2 7 61 81 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.724 -3.628 -3.509 0.000 -2.389 -3.997 1.887 -3.124 -3.546 0.258 -3.878 -1.641 1.093 -3.843 2.729 -2.437 ML 58 56 6 61 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 4 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 53 U A - - MP 63 62 6 67 4 2 5 59 79 -6.747 -6.954 -0.061 -5.369 -3.824 -3.633 -3.701 0.043 -2.726 -4.297 1.593 -3.394 -3.710 0.360 -4.101 -1.543 3.118 -3.987 -0.411 -2.567 ML 64 62 6 67 4 1 3 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 4 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - A - - - ML 69 68 6 71 3 1 4 57 76 -7.779 -0.023 -6.433 1.625 -2.002 -1.671 -1.510 D 70 68 6 71 3 0 0 55 75 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - A - - - ML 72 71 3 74 3 1 3 56 75 -8.182 -0.021 -6.500 1.625 -2.002 -1.671 -1.510 D 73 71 3 74 3 0 0 54 74 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 52 - A - - MR 75 74 3 77 5 1 3 55 74 -6.933 -0.044 -6.749 -6.961 -7.852 1.625 -2.002 -1.671 -1.510 D 76 74 3 77 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 51 u g - - MP 78 77 3 82 6 2 4 54 73 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.724 -3.628 -3.509 0.000 -2.389 -3.997 1.887 -3.124 -3.546 0.258 -3.878 -1.641 1.093 -3.843 2.729 -2.437 ML 79 77 3 82 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 50 A U - - MP 84 83 6 88 6 2 4 52 71 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.503 -2.612 -3.539 3.104 -3.737 -4.777 0.546 -3.598 -3.446 1.392 -3.979 -0.140 0.126 -4.012 -1.397 -2.393 ML 85 83 6 88 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 49 U A - - MP 90 89 6 94 6 2 4 50 69 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.824 -3.633 -3.701 0.043 -2.726 -4.297 1.593 -3.394 -3.710 0.360 -4.101 -1.543 3.118 -3.987 -0.411 -2.567 ML 91 89 6 94 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 48 C G - - MP 96 95 6 100 6 2 4 48 67 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.183 -4.053 -3.932 -0.322 -2.737 -4.391 3.419 -3.509 -3.972 -0.021 -4.269 -1.996 0.811 -4.275 -0.437 -2.825 ML 97 95 6 100 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 47 g u - - MP 102 101 6 106 6 2 3 46 65 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.389 -2.253 -3.535 1.262 -4.064 -4.800 0.283 -3.592 -3.265 1.662 -3.775 2.795 -0.078 -4.049 -1.656 -2.288 ML 103 101 6 106 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 46 G C - - MP 108 107 6 112 6 2 3 44 63 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.384 -2.925 -4.457 0.432 -4.728 -4.549 -0.180 -4.669 -4.084 3.539 -4.449 -0.614 -0.576 -4.231 -2.199 -3.340 ML 109 107 6 112 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 45 g u - - MP 114 113 6 118 4 2 2 42 61 -6.747 -6.954 -0.061 -5.369 -3.389 -2.253 -3.535 1.262 -4.064 -4.800 0.283 -3.592 -3.265 1.662 -3.775 2.795 -0.078 -4.049 -1.656 -2.288 ML 115 113 6 118 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - A - - - ML 120 119 6 122 3 1 1 39 59 -8.182 -0.021 -6.500 1.625 -2.002 -1.671 -1.510 D 121 119 6 122 3 0 0 38 57 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 44 - C - - MR 123 122 3 125 5 1 1 38 58 -6.933 -0.044 -6.749 -6.961 -7.852 -1.303 1.481 -2.108 -0.807 D 124 122 3 125 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 43 C G - - MP 126 125 3 130 6 2 2 37 57 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.183 -4.053 -3.932 -0.322 -2.737 -4.391 3.419 -3.509 -3.972 -0.021 -4.269 -1.996 0.811 -4.275 -0.437 -2.825 ML 127 125 3 130 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 42 U A - - MP 132 131 6 136 4 2 2 35 55 -6.747 -6.954 -0.061 -5.369 -3.824 -3.633 -3.701 0.043 -2.726 -4.297 1.593 -3.394 -3.710 0.360 -4.101 -1.543 3.118 -3.987 -0.411 -2.567 ML 133 131 6 136 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 35 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 34 54 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - A - - - ML 138 137 6 140 5 1 1 33 52 -6.933 -0.044 -6.749 -6.961 -7.852 1.625 -2.002 -1.671 -1.510 D 139 137 6 140 5 0 0 31 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 140 140 3 140 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 41 G C - - MP 141 140 3 145 6 2 2 32 51 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.384 -2.925 -4.457 0.432 -4.728 -4.549 -0.180 -4.669 -4.084 3.539 -4.449 -0.614 -0.576 -4.231 -2.199 -3.340 ML 142 140 3 145 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 40 A U - - MP 147 146 6 151 4 2 2 30 49 -6.747 -6.954 -0.061 -5.369 -3.503 -2.612 -3.539 3.104 -3.737 -4.777 0.546 -3.598 -3.446 1.392 -3.979 -0.140 0.126 -4.012 -1.397 -2.393 ML 148 146 6 151 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - C - - - ML 153 152 6 155 3 1 1 27 46 -8.182 -0.021 -6.500 -1.303 1.481 -2.108 -0.807 D 154 152 6 155 3 0 0 26 45 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 39 - U - - MR 156 155 3 158 5 1 1 26 45 -6.933 -0.044 -6.749 -6.961 -7.852 -1.152 -1.209 -1.866 1.508 D 157 155 3 158 5 0 0 25 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 38 G C - - MP 159 158 3 163 6 2 2 25 44 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -4.384 -2.925 -4.457 0.432 -4.728 -4.549 -0.180 -4.669 -4.084 3.539 -4.449 -0.614 -0.576 -4.231 -2.199 -3.340 ML 160 158 3 163 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 37 A U - - MP 165 164 6 169 6 2 2 23 42 -9.034 -8.973 -0.022 -7.750 -8.030 -8.425 -3.503 -2.612 -3.539 3.104 -3.737 -4.777 0.546 -3.598 -3.446 1.392 -3.979 -0.140 0.126 -4.012 -1.397 -2.393 ML 166 164 6 169 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 30 36 C G - - MP 171 170 6 175 4 2 2 21 40 -6.747 -6.954 -0.061 -5.369 -4.183 -4.053 -3.932 -0.322 -2.737 -4.391 3.419 -3.509 -3.972 -0.021 -4.269 -1.996 0.811 -4.275 -0.437 -2.825 ML 172 170 6 175 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - G - - - ML 177 176 6 179 3 1 1 18 36 -7.779 -0.023 -6.433 -1.185 -2.339 1.613 -1.723 D 178 176 6 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 180 179 3 182 3 1 1 16 35 -7.779 -0.023 -6.433 -1.185 -2.339 1.613 -1.723 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - C - - - ML 183 182 3 185 3 1 1 15 33 -7.779 -0.023 -6.433 -1.303 1.481 -2.108 -0.807 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - C - - - ML 186 185 3 188 3 1 1 13 32 -7.779 -0.023 -6.433 -1.303 1.481 -2.108 -0.807 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.625 -2.002 -1.671 -1.510 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2834 ACC RF03869 DESC mir-2834 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 21:42:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03869/CM NSEQ 2 EFFN 1.730469 CKSUM 1259204630 STATS LOCAL MSV -7.7864 0.72383 STATS LOCAL VITERBI -9.2158 0.72383 STATS LOCAL FORWARD -3.2976 0.72383 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35447 1.37047 1.30860 1.52449 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.31751 2.33252 2.82067 0.29455 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.46346 0.29831 3.02976 2.08373 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.46346 0.29831 3.02976 2.08373 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.21973 2.92180 2.67758 2.59428 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.36665 3.19377 0.22014 2.76805 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.47895 0.85927 2.23578 0.95246 6 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.38337 2.90641 0.22894 2.85225 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.38414 2.90718 0.22872 2.85336 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.49759 2.40944 1.57381 2.35509 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.64978 1.43169 2.39890 0.51147 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.64051 1.66650 2.34985 0.43946 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.21973 2.92180 2.67758 2.59428 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.21973 2.92180 2.67758 2.59428 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.64683 1.43186 2.39773 0.51193 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.49765 2.40928 1.57380 2.35483 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.64142 1.66650 2.35019 0.43931 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.88284 0.33188 2.61481 1.87555 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.78799 2.57298 0.39828 2.46606 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38393 2.90697 0.22878 2.85306 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.78777 2.57261 0.39844 2.46554 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.21973 2.92180 2.67758 2.59428 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.87732 0.33273 2.61249 1.87469 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.64024 1.66650 2.34975 0.43951 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.21973 2.92180 2.67758 2.59428 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.38384 2.90688 0.22880 2.85294 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.49757 2.40948 1.57381 2.35515 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.46346 0.29831 3.02976 2.08373 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.38185 2.90489 0.22938 2.85004 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.49767 2.40924 1.57380 2.35477 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.88274 0.33190 2.61476 1.87553 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.36665 3.19377 0.22014 2.76805 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.36665 3.19377 0.22014 2.76805 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.46346 0.29831 3.02976 2.08373 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.46346 0.29831 3.02976 2.08373 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.21973 2.92180 2.67758 2.59428 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.15098 2.78268 0.28704 2.64121 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.58971 1.83272 2.22587 0.42006 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.07934 0.26662 2.74147 2.09094 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.31751 2.33252 2.82067 0.29455 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.58042 1.83217 2.22296 0.42174 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.05056 0.27027 2.72990 2.08533 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.49957 2.52943 1.50315 2.39608 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.15255 2.78453 0.28641 2.64364 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.46346 0.29831 3.02976 2.08373 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.68335 1.64521 2.37802 0.43702 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.06886 0.26793 2.73728 2.08891 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.68488 1.64521 2.37858 0.43678 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.15041 2.78200 0.28727 2.64032 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.49974 2.52892 1.50316 2.39538 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.58977 1.83273 2.22589 0.42005 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 1.93306 2.57350 0.37307 2.40342 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.21973 2.92180 2.67758 2.59428 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.50015 2.52768 1.50317 2.39367 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 1.93109 2.57108 0.37416 2.40029 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.58705 1.83256 2.22504 0.42054 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.07338 0.26737 2.73909 2.08979 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.07576 0.26707 2.74004 2.09025 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 1.80081 2.39972 0.44787 2.25283 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.21973 2.92180 2.67758 2.59428 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.21973 2.92180 2.67758 2.59428 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.21973 2.92180 2.67758 2.59428 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.46346 0.29831 3.02976 2.08373 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.36665 3.19377 0.22014 2.76805 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //