INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1991 ACC RF03858 DESC mir-1991 microRNA precursor family STATES 202 NODES 50 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 02:33:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03858/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.917969 CKSUM 162723408 NULL 0.000 0.000 0.000 0.000 GA 66.00 TC 66.70 NC 65.50 EFP7GF -4.7112 0.73047 ECMLC 0.65293 -4.48321 4.41876 1600000 401292 0.002990 ECMGC 0.38685 -15.08722 -0.30034 1600000 121996 0.003279 ECMLI 0.61404 -3.20087 5.34274 1600000 227791 0.005268 ECMGI 0.43664 -9.39328 2.78087 1600000 81402 0.004914 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.943 -7.150 -0.053 -5.564 IL 1 1 2 1 4 1 18 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 18 82 102 -7.960 -0.021 -6.614 0.623 0.255 -1.108 -0.317 D 4 2 3 5 3 0 12 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 17 81 101 -7.960 -0.021 -6.614 0.552 -0.844 -1.050 0.579 D 7 5 3 8 3 0 11 79 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 16 80 100 -7.960 -0.021 -6.614 0.552 -0.844 -1.050 0.579 D 10 8 3 11 3 0 11 78 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 15 79 99 -7.960 -0.021 -6.614 -0.338 0.203 0.332 -0.323 D 13 11 3 14 3 0 10 77 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 14 78 98 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 16 14 3 17 3 0 9 77 96 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 13 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 66 - U - - MR 18 17 3 20 3 1 14 77 97 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 19 17 3 20 3 0 7 75 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 12 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 65 - U - - MR 21 20 3 23 3 1 13 76 96 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 22 20 3 23 3 0 6 74 94 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 64 - U - - MR 24 23 3 26 3 1 12 75 95 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 25 23 3 26 3 0 6 73 93 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 11 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 63 - A - - MR 27 26 3 29 3 1 12 74 94 -8.351 -0.019 -6.668 1.717 -2.363 -1.996 -1.904 D 28 26 3 29 3 0 5 72 92 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 62 - U - - MR 30 29 3 32 5 1 12 73 93 -7.090 -0.039 -6.905 -7.117 -8.009 -1.478 -1.476 -2.211 1.616 D 31 29 3 32 5 0 4 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 8 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 61 U A - - MP 33 32 3 37 6 2 13 72 92 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 34 32 3 37 6 1 6 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 8 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 60 A U - - MP 39 38 6 43 6 2 12 70 90 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 40 38 6 43 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 59 C G - - MP 45 44 6 49 6 2 12 68 88 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 46 44 6 49 6 1 5 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 5 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 58 C G - - MP 51 50 6 55 6 2 11 66 86 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 52 50 6 55 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 5 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 57 C G - - MP 57 56 6 61 6 2 10 64 84 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 58 56 6 61 6 1 4 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 6 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 56 U A - - MP 63 62 6 67 6 2 9 62 82 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 64 62 6 67 6 1 4 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 5 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 5 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 55 G C - - MP 69 68 6 73 6 2 7 60 80 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 70 68 6 73 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 4 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 4 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 54 U A - - MP 75 74 6 79 4 2 5 58 78 -6.943 -7.150 -0.053 -5.564 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 76 74 6 79 4 1 2 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 4 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 3 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - U - - - ML 81 80 6 83 3 1 4 55 75 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 82 80 6 83 3 0 0 54 74 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 53 - C - - MR 84 83 3 86 5 1 3 54 74 -7.090 -0.039 -6.905 -7.117 -8.009 -1.731 1.621 -2.554 -1.147 D 85 83 3 86 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 52 A U - - MP 87 86 3 91 6 2 4 53 73 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 88 86 3 91 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 51 A U - - MP 93 92 6 97 4 2 2 51 71 -6.943 -7.150 -0.053 -5.564 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 94 92 6 97 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - U - - - ML 99 98 6 101 3 1 1 49 68 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 100 98 6 101 3 0 0 48 67 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 50 - U - - MR 102 101 3 104 5 1 1 48 67 -7.090 -0.039 -6.905 -7.117 -8.009 -1.478 -1.476 -2.211 1.616 D 103 101 3 104 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 49 C G - - MP 105 104 3 109 6 2 2 47 66 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 106 104 3 109 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 48 G C - - MP 111 110 6 115 4 2 2 45 64 -6.943 -7.150 -0.053 -5.564 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 112 110 6 115 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 47 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - a - - - ML 117 116 6 119 5 1 1 43 62 -7.090 -0.039 -6.905 -7.117 -8.009 0.706 -1.392 0.501 -0.804 D 118 116 6 119 5 0 0 41 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 119 119 3 119 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 47 A U - - MP 120 119 3 124 6 2 2 42 61 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 121 119 3 124 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 46 G C - - MP 126 125 6 130 6 2 2 40 59 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 127 125 6 130 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 45 A U - - MP 132 131 6 136 6 2 2 38 57 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 133 131 6 136 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 44 A U - - MP 138 137 6 142 6 2 2 36 55 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 139 137 6 142 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 43 G C - - MP 144 143 6 148 6 2 2 34 53 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 145 143 6 148 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 42 u a - - MP 150 149 6 154 4 2 2 31 51 -6.943 -7.150 -0.053 -5.564 -3.434 -3.418 -3.365 0.196 -2.439 -3.975 1.834 -3.115 -3.390 0.415 -3.804 -1.503 2.311 -3.608 1.825 -2.311 ML 151 149 6 154 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 33 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - g - - - ML 156 155 6 158 3 1 1 29 48 -7.960 -0.021 -6.614 -0.338 0.203 0.332 -0.323 D 157 155 6 158 3 0 0 28 47 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - u - - - ML 159 158 3 161 3 1 1 28 47 -7.960 -0.021 -6.614 -0.702 0.461 -1.480 0.723 D 160 158 3 161 3 0 0 27 46 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 162 161 3 164 3 1 1 27 46 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 163 161 3 164 3 0 0 26 45 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - A - - - ML 165 164 3 167 3 1 1 26 45 -7.960 -0.021 -6.614 1.717 -2.363 -1.996 -1.904 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - U - - - ML 168 167 3 170 3 1 1 24 43 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 169 167 3 170 3 0 0 23 42 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - a - - - ML 171 170 3 173 3 1 1 23 42 -7.960 -0.021 -6.614 0.706 -1.392 0.501 -0.804 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - u - - - ML 174 173 3 176 3 1 1 22 41 -7.960 -0.021 -6.614 0.552 -0.844 -1.050 0.579 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - u - - - ML 177 176 3 179 3 1 1 21 40 -7.960 -0.021 -6.614 -0.366 -0.938 0.335 0.527 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - u - - - ML 180 179 3 182 3 1 1 20 39 -7.960 -0.021 -6.614 -0.702 0.461 -1.480 0.723 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - U - - - ML 183 182 3 185 3 1 1 19 37 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - a - - - ML 186 185 3 188 3 1 1 17 36 -7.960 -0.021 -6.614 0.623 0.255 -1.108 -0.317 D 187 185 3 188 3 0 0 17 35 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - u - - - ML 189 188 3 191 3 1 1 16 35 -7.960 -0.021 -6.614 -0.702 0.461 -1.480 0.723 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - C - - - ML 192 191 3 194 3 1 1 15 33 -7.960 -0.021 -6.614 -1.731 1.621 -2.554 -1.147 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - U - - - ML 195 194 3 197 3 1 1 13 31 -7.960 -0.450 -1.922 -1.478 -1.476 -2.211 1.616 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - C - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.787 1.217 -1.557 -0.404 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1991 ACC RF03858 DESC mir-1991 microRNA precursor family LENG 66 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 02:33:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03858/CM NSEQ 2 EFFN 1.746094 CKSUM 162723408 STATS LOCAL MSV -8.1064 0.73047 STATS LOCAL VITERBI -9.5495 0.73047 STATS LOCAL FORWARD -2.6712 0.73047 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49068 1.45970 1.55280 1.10618 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.96495 1.22542 2.12424 1.58067 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.01066 1.94968 2.09063 0.99400 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 1.01066 1.94968 2.09063 0.99400 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.59290 1.26125 1.17754 1.58315 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.32537 2.33897 2.82899 0.29202 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.64499 1.67221 2.35790 0.43612 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.49281 2.41826 1.58031 2.36333 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.89055 0.32909 2.62414 1.88142 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.89074 0.32906 2.62422 1.88145 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.89041 0.32911 2.62408 1.88140 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.64873 1.67223 2.35929 0.43550 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.38896 2.91590 0.22698 2.86156 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.64797 1.67222 2.35900 0.43562 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.32537 2.33897 2.82899 0.29202 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.49316 2.41741 1.58026 2.36196 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.49277 2.41836 1.58031 2.36348 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.32537 2.33897 2.82899 0.29202 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.88681 0.32966 2.62256 1.88084 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38942 2.91637 0.22684 2.86224 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.90673 2.31150 1.05611 1.90221 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.49271 2.41851 1.58032 2.36372 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.38980 2.91676 0.22673 2.86279 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.49263 2.41870 1.58033 2.36402 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.49268 2.41859 1.58033 2.36385 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.38924 2.91619 0.22689 2.86198 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.33797 1.38070 2.08849 0.63828 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.59290 1.26125 1.17754 1.58315 27 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.83614 1.08509 2.37042 0.89341 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.32537 2.33897 2.82899 0.29202 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.21761 2.93049 2.68540 2.60378 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.32537 2.33897 2.82899 0.29202 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.90673 2.31150 1.05611 1.90221 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.01066 1.94968 2.09063 0.99400 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.61662 2.01143 1.17006 1.02922 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.83614 1.08509 2.37042 0.89341 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.32537 2.33897 2.82899 0.29202 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.96495 1.22542 2.12424 1.58067 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.83614 1.08509 2.37042 0.89341 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.47382 0.29507 3.04054 2.09194 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.32537 2.33897 2.82899 0.29202 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33397 3.73767 1.34663 1.46634 0.26236 1.09861 0.40547 41 1.87189 0.58426 2.40020 1.61974 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06438 3.46808 3.46808 1.46634 0.26236 0.16811 1.86600 42 1.11810 2.25151 0.80534 2.11261 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.07507 0.26608 2.74567 2.09368 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.59264 1.83981 2.23317 0.41682 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.59163 1.83974 2.23285 0.41700 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.06842 0.26692 2.74299 2.09238 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.58438 1.83929 2.23055 0.41831 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.08538 0.26480 2.74982 2.09568 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.15881 2.79442 0.28383 2.65230 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.32537 2.33897 2.82899 0.29202 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.59840 1.84016 2.23498 0.41579 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.60009 1.84027 2.23551 0.41548 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.47382 0.29507 3.04054 2.09194 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.49573 2.53684 1.50892 2.40118 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.07630 0.26593 2.74617 2.09392 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.49558 2.53730 1.50891 2.40181 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.15588 2.79094 0.28499 2.64775 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.15635 2.79150 0.28480 2.64849 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.15693 2.79219 0.28457 2.64939 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.59826 1.84015 2.23493 0.41581 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.49478 2.53973 1.50890 2.40514 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.32537 2.33897 2.82899 0.29202 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.21761 2.93049 2.68540 2.60378 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.32537 2.33897 2.82899 0.29202 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.32537 2.33897 2.82899 0.29202 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.32537 2.33897 2.82899 0.29202 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //