INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1549 ACC RF03848 DESC mir-1549 microRNA precursor family STATES 193 NODES 46 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 21:34:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03848/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.675781 CKSUM 1104133421 NULL 0.000 0.000 0.000 0.000 GA 91.00 TC 91.70 NC 82.70 EFP7GF -4.9454 0.72816 ECMLC 0.60435 -6.73229 2.96781 1600000 421835 0.002845 ECMGC 0.43502 -16.63205 -3.30508 1600000 131784 0.003035 ECMLI 0.57633 -5.23245 3.84359 1600000 224328 0.005349 ECMGI 0.46885 -11.86591 -0.33303 1600000 89206 0.004484 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.840 -7.047 -0.057 -5.461 IL 1 1 2 1 4 1 15 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 14 79 98 -7.864 -0.022 -6.519 -0.282 0.171 0.288 -0.268 D 4 2 3 5 3 0 9 77 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 13 78 97 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 7 5 3 8 3 0 8 76 96 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 12 77 96 -8.262 -0.020 -6.579 0.602 0.222 -1.046 -0.265 D 10 8 3 11 3 0 7 75 95 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 11 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 63 - U - - MR 12 11 3 14 3 1 12 76 95 -8.262 -0.020 -6.579 -1.304 -1.332 -2.027 1.562 D 13 11 3 14 3 0 5 74 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 62 - C - - MR 15 14 3 17 3 1 11 75 94 -8.262 -0.020 -6.579 -1.501 1.553 -2.316 -0.965 D 16 14 3 17 3 0 4 73 93 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - G - - MR 18 17 3 20 3 1 11 74 93 -8.262 -0.020 -6.579 -1.367 -2.552 1.669 -1.938 D 19 17 3 20 3 0 4 72 92 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 9 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - A - - MR 21 20 3 23 5 1 10 73 92 -7.007 -0.041 -6.822 -7.034 -7.926 1.672 -2.171 -1.823 -1.694 D 22 20 3 23 5 0 3 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 7 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 59 g u - - MP 24 23 3 28 6 2 12 72 91 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.492 -2.310 -3.648 1.207 -4.262 -4.989 0.108 -3.689 -3.345 1.525 -3.860 2.939 -0.253 -4.222 -1.833 -2.376 ML 25 23 3 28 6 1 5 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 5 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 1 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 6 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 7 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 58 C G - - MP 30 29 6 34 6 2 11 70 89 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 31 29 6 34 6 1 4 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 4 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 6 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 6 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 57 C G - - MP 36 35 6 40 6 2 11 68 87 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 37 35 6 40 6 1 4 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 5 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 6 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 56 G C - - MP 42 41 6 46 6 2 10 66 85 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 43 41 6 46 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 5 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 5 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 55 G C - - MP 48 47 6 52 6 2 9 64 83 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 49 47 6 52 6 1 3 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 5 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 54 G C - - MP 54 53 6 58 6 2 8 62 81 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 55 53 6 58 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 53 C G - - MP 60 59 6 64 6 2 6 60 79 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 61 59 6 64 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 52 U A - - MP 66 65 6 70 4 2 4 58 77 -6.840 -7.047 -0.057 -5.461 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 67 65 6 70 4 1 2 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 3 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 3 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - C - - - ML 72 71 6 74 3 1 3 55 75 -8.262 -0.020 -6.579 -1.501 1.553 -2.316 -0.965 D 73 71 6 74 3 0 0 54 73 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 51 - A - - MR 75 74 3 77 5 1 3 54 74 -7.007 -0.041 -6.822 -7.034 -7.926 1.672 -2.171 -1.823 -1.694 D 76 74 3 77 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 50 G C - - MP 78 77 3 82 6 2 4 53 73 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 79 77 3 82 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 49 u g - - MP 84 83 6 88 6 2 4 51 71 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.890 -3.802 -3.638 -0.157 -2.460 -4.097 1.821 -3.213 -3.676 0.071 -3.990 -1.810 1.001 -3.994 2.866 -2.558 ML 85 83 6 88 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 48 a u - - MP 90 89 6 94 6 2 3 49 69 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.230 -2.287 -3.344 2.354 -3.848 -4.552 0.380 -3.528 -3.222 1.715 -3.754 1.921 0.112 -3.718 -1.513 -2.198 ML 91 89 6 94 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 47 G C - - MP 96 95 6 100 6 2 3 47 67 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 97 95 6 100 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 46 G C - - MP 102 101 6 106 4 2 2 45 65 -6.766 -8.011 -0.087 -4.464 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 103 101 6 106 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 44 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 106 106 5 106 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 45 - C - - MR 108 107 6 110 5 1 1 43 63 -7.007 -0.041 -6.822 -7.034 -7.926 -1.501 1.553 -2.316 -0.965 D 109 107 6 110 5 0 0 42 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 44 u g - - MP 111 110 3 115 4 2 2 42 62 -6.840 -7.047 -0.057 -5.461 -3.890 -3.802 -3.638 -0.157 -2.460 -4.097 1.821 -3.213 -3.676 0.071 -3.990 -1.810 1.001 -3.994 2.866 -2.558 ML 112 110 3 115 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 3 115 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - A - - - ML 117 116 6 119 3 1 1 40 59 -8.262 -0.020 -6.579 1.672 -2.171 -1.823 -1.694 D 118 116 6 119 3 0 0 38 58 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 43 - C - - MR 120 119 3 122 5 1 1 39 58 -7.007 -0.041 -6.822 -7.034 -7.926 -1.501 1.553 -2.316 -0.965 D 121 119 3 122 5 0 0 37 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 42 G C - - MP 123 122 3 127 6 2 2 38 57 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 124 122 3 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 41 a u - - MP 129 128 6 133 6 2 2 36 55 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.230 -2.287 -3.344 2.354 -3.848 -4.552 0.380 -3.528 -3.222 1.715 -3.754 1.921 0.112 -3.718 -1.513 -2.198 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 40 A U - - MP 135 134 6 139 6 2 2 34 53 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 136 134 6 139 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 39 G C - - MP 141 140 6 145 6 2 2 32 51 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 142 140 6 145 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 38 C G - - MP 147 146 6 151 4 2 2 30 49 -6.840 -7.047 -0.057 -5.461 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 148 146 6 151 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - U - - - ML 153 152 6 155 3 1 1 27 46 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 154 152 6 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - G - - - ML 156 155 3 158 3 1 1 26 45 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 157 155 3 158 3 0 0 25 44 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - a - - - ML 159 158 3 161 3 1 1 25 44 -7.864 -0.022 -6.519 0.602 0.222 -1.046 -0.265 D 160 158 3 161 3 0 0 24 43 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - G - - - ML 162 161 3 164 3 1 1 24 42 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 163 161 3 164 3 0 0 23 42 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 165 164 3 167 3 1 1 22 41 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 166 164 3 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - U - - - ML 168 167 3 170 3 1 1 21 40 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - u - - - ML 171 170 3 173 3 1 1 20 39 -7.864 -0.022 -6.519 -0.627 0.423 -1.395 0.706 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 174 173 3 176 3 1 1 19 38 -7.864 -0.022 -6.519 0.538 -0.800 -1.002 0.560 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - g - - - ML 177 176 3 179 3 1 1 18 36 -7.864 -0.022 -6.519 -0.282 0.171 0.288 -0.268 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - U - - - ML 180 179 3 182 3 1 1 16 35 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - U - - - ML 183 182 3 185 3 1 1 15 33 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - u - - - ML 186 185 3 188 3 1 1 13 32 -7.864 -0.022 -6.519 -0.627 0.423 -1.395 0.706 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.304 -1.332 -2.027 1.562 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1549 ACC RF03848 DESC mir-1549 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 21:34:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03848/CM NSEQ 2 EFFN 1.613281 CKSUM 1104133421 STATS LOCAL MSV -7.9584 0.72816 STATS LOCAL VITERBI -9.3221 0.72816 STATS LOCAL FORWARD -3.1932 0.72816 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74428 1.28214 1.23289 1.36126 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.57154 1.27385 1.19477 1.56184 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.25793 2.28376 2.75751 0.31460 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.97320 1.23871 2.10037 1.56083 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.76300 2.50451 0.42144 2.40069 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81815 0.35495 2.54134 1.83060 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81963 0.35471 2.54194 1.83083 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.34310 2.83578 0.24397 2.78406 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.34295 2.83564 0.24402 2.78385 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.34270 2.83541 0.24409 2.78351 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81864 0.35487 2.54154 1.83068 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57863 1.62426 2.27898 0.47052 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.38505 0.32432 2.94782 2.02160 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.34003 2.83284 0.24491 2.77975 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.58932 1.40462 2.32992 0.54100 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.07628 2.32629 0.80083 2.18458 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.34312 2.83581 0.24396 2.78410 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.34297 2.83566 0.24401 2.78388 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57075 1.40587 2.32283 0.54409 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23667 2.85568 2.61812 2.52207 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.34016 2.83297 0.24487 2.77994 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.07630 2.32601 0.80097 2.18418 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.53644 2.34075 1.52530 2.28907 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.34315 2.83584 0.24395 2.78414 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81966 0.35470 2.54195 1.83083 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.25793 2.28376 2.75751 0.31460 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.29577 3.11081 0.24015 2.68468 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.97320 1.23871 2.10037 1.56083 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.29577 3.11081 0.24015 2.68468 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.25793 2.28376 2.75751 0.31460 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.25793 2.28376 2.75751 0.31460 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.80707 1.09996 2.33753 0.90038 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.01630 1.93286 2.07158 1.00144 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.57154 1.27385 1.19477 1.56184 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.25793 2.28376 2.75751 0.31460 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.25793 2.28376 2.75751 0.31460 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.80707 1.09996 2.33753 0.90038 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.25793 2.28376 2.75751 0.31460 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.10454 2.70827 0.30733 2.57656 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.00411 0.28490 2.66607 2.04947 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.52262 1.77719 2.15730 0.45413 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.40895 1.47304 2.13366 0.57543 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.01049 0.28404 2.66856 2.05071 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.38505 0.32432 2.94782 2.02160 43 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.89377 2.50089 0.39849 2.34181 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.38505 0.32432 2.94782 2.02160 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.00261 0.28510 2.66549 2.04918 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.00405 0.28491 2.66605 2.04946 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.40793 1.47311 2.13332 0.57564 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.89521 2.50257 0.39764 2.34405 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.01038 0.28405 2.66852 2.05069 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.23667 2.85568 2.61812 2.52207 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.53604 2.45527 1.46083 2.33246 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.10387 2.70750 0.30761 2.57553 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.00139 0.28527 2.66501 2.04894 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.00257 0.28511 2.66547 2.04917 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.00400 0.28491 2.66603 2.04945 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.10546 2.70931 0.30694 2.57795 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.10608 2.71002 0.30667 2.57890 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.62815 1.59242 2.31479 0.46910 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.23667 2.85568 2.61812 2.52207 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.29577 3.11081 0.24015 2.68468 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.38505 0.32432 2.94782 2.02160 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.25793 2.28376 2.75751 0.31460 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //