INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1538 ACC RF03847 DESC mir-1538 microRNA precursor family STATES 178 NODES 39 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:57:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03847/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.714844 CKSUM 47985602 NULL 0.000 0.000 0.000 0.000 GA 78.00 TC 78.10 NC 77.30 EFP7GF -5.3226 0.72865 ECMLC 0.62668 -5.55874 3.56906 1600000 365947 0.003279 ECMGC 0.39273 -17.94776 -2.31568 1600000 185471 0.002157 ECMLI 0.61452 -4.51029 4.50141 1600000 304962 0.003935 ECMGI 0.40655 -13.61823 0.26768 1600000 113185 0.003534 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 73 93 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 IL 1 1 2 1 6 1 4 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 58 g u - - MP 3 2 3 7 6 2 9 73 93 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.512 -2.322 -3.669 1.196 -4.299 -5.026 0.074 -3.707 -3.361 1.499 -3.876 2.964 -0.286 -4.255 -1.867 -2.393 ML 4 2 3 7 6 1 3 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 2 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 4 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 4 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 57 g c - - MP 9 8 6 13 6 2 8 71 91 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.609 -2.479 -3.666 1.034 -4.219 -4.438 0.213 -3.950 -3.585 2.942 -4.029 1.570 -0.075 -3.773 -1.739 -2.549 ML 10 8 6 13 6 1 2 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 2 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 56 g c - - MP 15 14 6 19 6 2 8 69 89 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.063 -2.434 -3.176 0.906 -3.229 -3.870 0.771 -3.411 -3.140 2.777 0.852 -0.314 0.439 -3.262 -1.057 -2.209 ML 16 14 6 19 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 55 A U - - MP 21 20 6 25 6 2 7 67 87 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.656 -2.723 -3.684 3.236 -3.955 -5.006 0.336 -3.734 -3.582 1.225 -4.123 -0.222 -0.082 -4.216 -1.606 -2.526 ML 22 20 6 25 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 54 a u - - MP 27 26 6 31 6 2 7 65 85 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -2.883 1.354 -3.021 2.230 -3.316 -4.021 0.625 -3.252 -2.958 1.729 -3.473 0.080 0.368 -3.276 -1.159 -1.990 ML 28 26 6 31 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 53 C G - - MP 33 32 6 37 6 2 7 63 83 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 34 32 6 37 6 1 2 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 52 A U - - MP 39 38 6 43 6 2 6 61 81 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.656 -2.723 -3.684 3.236 -3.955 -5.006 0.336 -3.734 -3.582 1.225 -4.123 -0.222 -0.082 -4.216 -1.606 -2.526 ML 40 38 6 43 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 51 G C - - MP 45 44 6 49 6 2 6 59 79 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 46 44 6 49 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 50 C G - - MP 51 50 6 55 6 2 6 57 77 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 52 50 6 55 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 49 A U - - MP 57 56 6 61 6 2 5 55 75 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.656 -2.723 -3.684 3.236 -3.955 -5.006 0.336 -3.734 -3.582 1.225 -4.123 -0.222 -0.082 -4.216 -1.606 -2.526 ML 58 56 6 61 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 48 G C - - MP 63 62 6 67 6 2 4 53 73 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 64 62 6 67 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 47 C G - - MP 69 68 6 73 4 2 2 51 71 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 70 68 6 73 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 75 74 6 77 3 1 1 49 68 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 76 74 6 77 3 0 0 48 67 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 78 77 3 80 3 1 1 48 67 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 79 77 3 80 3 0 0 47 66 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 81 80 3 83 3 1 1 47 66 -7.880 -0.022 -6.534 -1.539 1.565 -2.355 -0.994 D 82 80 3 83 3 0 0 46 65 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 84 83 3 86 3 1 1 46 65 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 85 83 3 86 3 0 0 45 64 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 87 86 3 89 3 1 1 45 64 -8.276 -0.020 -6.594 0.540 -0.807 -1.010 0.564 D 88 86 3 89 3 0 0 43 63 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 46 - G - - MR 90 89 3 92 3 1 1 44 63 -8.276 -0.020 -6.594 -1.401 -2.592 1.679 -1.978 D 91 89 3 92 3 0 0 42 61 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 45 - G - - MR 93 92 3 95 5 1 1 43 62 -7.020 -0.041 -6.836 -7.048 -7.940 -1.401 -2.592 1.679 -1.978 D 94 92 3 95 5 0 0 41 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 44 G C - - MP 96 95 3 100 6 2 2 42 61 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 97 95 3 100 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 43 G C - - MP 102 101 6 106 6 2 2 40 59 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 103 101 6 106 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 42 G C - - MP 108 107 6 112 6 2 2 38 57 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 109 107 6 112 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 41 C G - - MP 114 113 6 118 6 2 2 36 55 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 115 113 6 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 40 C G - - MP 120 119 6 124 4 2 2 34 53 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 121 119 6 124 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 126 125 6 128 3 1 1 31 50 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 127 125 6 128 3 0 0 30 49 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 39 - C - - MR 129 128 3 131 5 1 1 30 49 -7.020 -0.041 -6.836 -7.048 -7.940 -1.539 1.565 -2.355 -0.994 D 130 128 3 131 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 38 C G - - MP 132 131 3 136 6 2 2 29 48 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 133 131 3 136 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 37 G C - - MP 138 137 6 142 6 2 2 27 46 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 139 137 6 142 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 36 c g - - MP 144 143 6 148 6 2 2 25 44 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -2.970 -2.899 -2.992 0.346 -2.334 1.255 2.579 -2.927 -3.025 0.685 -3.445 -1.178 1.101 -3.180 -0.169 -2.053 ML 145 143 6 148 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 35 u g - - MP 150 149 6 154 4 2 2 23 42 -6.857 -7.064 -0.057 -5.478 -3.921 -3.835 -3.662 -0.187 -2.474 -4.116 1.808 -3.230 -3.701 0.036 -4.011 -1.842 0.983 -4.023 2.890 -2.581 ML 151 149 6 154 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - U - - - ML 156 155 6 158 3 1 1 20 39 -7.880 -0.022 -6.534 -1.332 -1.356 -2.057 1.571 D 157 155 6 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - C - - - ML 159 158 3 161 3 1 1 19 38 -7.880 -0.022 -6.534 -1.539 1.565 -2.355 -0.994 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - C - - - ML 162 161 3 164 3 1 1 18 36 -7.880 -0.022 -6.534 -1.539 1.565 -2.355 -0.994 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - U - - - ML 165 164 3 167 3 1 1 16 35 -7.880 -0.022 -6.534 -1.332 -1.356 -2.057 1.571 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - G - - - ML 168 167 3 170 3 1 1 15 33 -7.880 -0.022 -6.534 -1.401 -2.592 1.679 -1.978 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - C - - - ML 171 170 3 173 3 1 1 13 32 -7.880 -0.022 -6.534 -1.539 1.565 -2.355 -0.994 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - C - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.539 1.565 -2.355 -0.994 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1538 ACC RF03847 DESC mir-1538 microRNA precursor family LENG 58 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 21:57:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03847/CM NSEQ 2 EFFN 1.707031 CKSUM 47985602 STATS LOCAL MSV -7.8010 0.72865 STATS LOCAL VITERBI -9.0030 0.72865 STATS LOCAL FORWARD -2.8648 0.72865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.75377 1.16367 1.16612 1.59470 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.78927 2.56953 0.39815 2.46760 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.89231 2.47987 0.39941 2.35592 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 1.93186 2.08396 0.52037 1.99230 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.50435 2.39741 1.56413 2.34468 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.76287 2.16944 1.24899 2.02012 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.87275 0.33590 2.60138 1.86697 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.50496 2.39596 1.56407 2.34234 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.37621 2.89332 0.23158 2.84000 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.86937 0.33643 2.59998 1.86645 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.50522 2.39534 1.56404 2.34134 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.37511 2.89223 0.23190 2.83842 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.86768 0.33669 2.59928 1.86619 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.22298 2.90871 2.66581 2.57997 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.22298 2.90871 2.66581 2.57997 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.44789 0.30328 3.01352 2.07138 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.22298 2.90871 2.66581 2.57997 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.01231 1.94475 2.08509 0.99613 17 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.37364 2.89077 0.23233 2.83630 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.37560 2.89272 0.23176 2.83913 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.37622 2.89334 0.23157 2.84002 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.87030 0.33628 2.60036 1.86659 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.86989 0.33635 2.60019 1.86653 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.30568 2.32283 2.80815 0.29841 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.86508 0.33710 2.59819 1.86578 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.37552 2.89264 0.23178 2.83901 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.23998 0.61966 1.94554 1.54881 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.63837 1.42620 2.38543 0.51709 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.30568 2.32283 2.80815 0.29841 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.44789 0.30328 3.01352 2.07138 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.44789 0.30328 3.01352 2.07138 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.30568 2.32283 2.80815 0.29841 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.35265 3.17742 0.22394 2.75161 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.44789 0.30328 3.01352 2.07138 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.44789 0.30328 3.01352 2.07138 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.92406 2.55766 0.37861 2.38935 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.80780 1.33265 0.82089 2.02367 36 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.06275 0.27034 2.72589 2.08238 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.14344 2.76998 0.29024 2.63105 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.44789 0.30328 3.01352 2.07138 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.14082 2.76690 0.29130 2.62700 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.14129 2.76746 0.29111 2.62774 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.06044 0.27063 2.72497 2.08193 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.06285 0.27033 2.72593 2.08240 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.06582 0.26995 2.72711 2.08297 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.35265 3.17742 0.22394 2.75161 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.35265 3.17742 0.22394 2.75161 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.13955 2.76542 0.29181 2.62506 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.05332 0.27154 2.72213 2.08055 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.57170 1.82130 2.21069 0.42747 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.14033 2.76633 0.29150 2.62625 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.05656 0.27113 2.72343 2.08118 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.57397 1.82143 2.21139 0.42706 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.14191 2.76819 0.29086 2.62869 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.24507 0.98017 1.97372 0.96786 54 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.57924 1.82173 2.21302 0.42610 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.22536 0.80254 1.36230 1.67285 56 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.59271 0.69997 2.29299 1.11591 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.69863 1.63455 2.37490 0.43907 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //