INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1003 ACC RF03830 DESC mir-1003 microRNA precursor family STATES 172 NODES 37 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 11:15:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03830/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.792969 CKSUM 1074148952 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 90.90 NC 73.30 EFP7GF -4.9550 0.72816 ECMLC 0.68503 -4.92891 3.68212 1600000 437519 0.002743 ECMGC 0.46219 -16.85066 -3.22967 1600000 216853 0.001845 ECMLI 0.65611 -4.03040 4.60372 1600000 346274 0.003465 ECMGI 0.51163 -11.49008 -0.40703 1600000 116069 0.003446 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 90 -6.812 -8.057 -0.084 -4.511 IL 1 1 2 1 4 1 4 73 92 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 56 - G - - MR 3 2 3 5 3 1 7 71 91 -8.305 -0.019 -6.623 -1.468 -2.670 1.696 -2.056 D 4 2 3 5 3 0 1 70 89 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 5 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 55 - A - - MR 6 5 3 8 5 1 7 70 90 -7.047 -0.040 -6.863 -7.075 -7.967 1.695 -2.265 -1.908 -1.797 D 7 5 3 8 5 0 1 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 4 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 54 G C - - MP 9 8 3 13 6 2 8 69 89 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 10 8 3 13 6 1 2 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 53 U A - - MP 15 14 6 19 6 2 8 67 87 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 16 14 6 19 6 1 2 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 52 G C - - MP 21 20 6 25 6 2 7 65 85 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 22 20 6 25 6 1 2 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 51 G U - - MP 27 26 6 31 6 2 7 63 83 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.550 -2.345 -3.712 1.173 -4.374 -5.099 0.008 -3.744 -3.392 1.447 -3.909 3.011 -0.352 -4.321 -1.934 -2.426 ML 28 26 6 31 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 50 G U - - MP 33 32 6 37 6 2 6 61 81 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.550 -2.345 -3.712 1.173 -4.374 -5.099 0.008 -3.744 -3.392 1.447 -3.909 3.011 -0.352 -4.321 -1.934 -2.426 ML 34 32 6 37 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 49 U A - - MP 39 38 6 43 6 2 6 59 79 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 40 38 6 43 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 48 A U - - MP 45 44 6 49 6 2 4 57 77 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 46 44 6 49 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 47 U A - - MP 51 50 6 55 4 2 3 55 74 -6.891 -7.098 -0.055 -5.512 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 52 50 6 55 4 1 1 56 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 55 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 1 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - C - - - ML 57 56 6 59 3 1 2 53 72 -8.305 -0.019 -6.623 -1.614 1.588 -2.433 -1.053 D 58 56 6 59 3 0 0 51 71 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 46 - C - - MR 60 59 3 62 5 1 1 52 71 -7.047 -0.040 -6.863 -7.075 -7.967 -1.614 1.588 -2.433 -1.053 D 61 59 3 62 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 45 U A - - MP 63 62 3 67 6 2 2 51 70 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 64 62 3 67 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 44 G U - - MP 69 68 6 73 6 2 2 49 68 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.550 -2.345 -3.712 1.173 -4.374 -5.099 0.008 -3.744 -3.392 1.447 -3.909 3.011 -0.352 -4.321 -1.934 -2.426 ML 70 68 6 73 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 43 G U - - MP 75 74 6 79 6 2 2 47 66 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.550 -2.345 -3.712 1.173 -4.374 -5.099 0.008 -3.744 -3.392 1.447 -3.909 3.011 -0.352 -4.321 -1.934 -2.426 ML 76 74 6 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 42 A U - - MP 81 80 6 85 6 2 2 45 64 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 82 80 6 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 41 U A - - MP 87 86 6 91 6 2 2 43 62 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 40 G C - - MP 93 92 6 97 6 2 2 41 60 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 94 92 6 97 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 39 U A - - MP 99 98 6 103 6 2 2 39 58 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 100 98 6 103 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 38 G C - - MP 105 104 6 109 4 2 2 37 56 -6.812 -8.057 -0.084 -4.511 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 106 104 6 109 4 1 1 36 55 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 36 55 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 34 53 -12.737 -14.007 -2.036 -0.404 IL 109 109 5 109 4 1 1 36 55 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 36 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 37 - U - - MR 111 110 6 113 5 1 1 35 54 -7.047 -0.040 -6.863 -7.075 -7.967 -1.389 -1.402 -2.117 1.589 D 112 110 6 113 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 36 G C - - MP 114 113 3 118 4 2 2 34 53 -6.891 -7.098 -0.055 -5.512 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 115 113 3 118 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 3 118 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - - - ML 120 119 6 122 3 1 1 31 50 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 121 119 6 122 3 0 0 30 49 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - - - ML 123 122 3 125 3 1 1 30 49 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 124 122 3 125 3 0 0 29 47 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 35 - U - - MR 126 125 3 128 3 1 1 29 48 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 127 125 3 128 3 0 0 27 46 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 34 - C - - MR 129 128 3 131 5 1 1 28 47 -7.047 -0.040 -6.863 -7.075 -7.967 -1.614 1.588 -2.433 -1.053 D 130 128 3 131 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 33 G C - - MP 132 131 3 136 6 2 2 27 46 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 133 131 3 136 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 32 G U - - MP 138 137 6 142 6 2 2 25 44 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.550 -2.345 -3.712 1.173 -4.374 -5.099 0.008 -3.744 -3.392 1.447 -3.909 3.011 -0.352 -4.321 -1.934 -2.426 ML 139 137 6 142 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 31 C G - - MP 144 143 6 148 6 2 2 23 42 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.446 -4.342 -4.153 -0.584 -2.894 -4.578 3.518 -3.694 -4.199 -0.329 -4.471 -2.288 0.630 -4.522 -0.598 -3.042 ML 145 143 6 148 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 30 u g - - MP 150 149 6 154 4 2 2 21 40 -6.891 -7.098 -0.055 -5.512 -3.984 -3.901 -3.711 -0.246 -2.502 -4.154 1.782 -3.265 -3.750 -0.035 -4.054 -1.905 0.948 -4.080 2.935 -2.627 ML 151 149 6 154 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - C - - - ML 156 155 6 158 3 1 1 18 36 -7.911 -0.021 -6.566 -1.614 1.588 -2.433 -1.053 D 157 155 6 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - U - - - ML 159 158 3 161 3 1 1 16 35 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - G - - - ML 162 161 3 164 3 1 1 15 33 -7.911 -0.021 -6.566 -1.468 -2.670 1.696 -2.056 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - G - - - ML 165 164 3 167 3 1 1 13 32 -7.911 -0.021 -6.566 -1.468 -2.670 1.696 -2.056 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - C - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 -1.614 1.588 -2.433 -1.053 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1003 ACC RF03830 DESC mir-1003 microRNA precursor family LENG 56 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 11:15:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03830/CM NSEQ 2 EFFN 1.816406 CKSUM 1074148952 STATS LOCAL MSV -8.1696 0.72816 STATS LOCAL VITERBI -8.9352 0.72816 STATS LOCAL FORWARD -3.1623 0.72816 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.70272 1.40148 1.25653 1.24848 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.40712 2.95109 0.22036 2.89295 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.68224 1.69822 2.40040 0.41870 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.41246 2.95659 0.21886 2.90084 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.80558 2.62075 0.38323 2.51065 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.80560 2.62080 0.38321 2.51072 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.68520 1.69825 2.40153 0.41823 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.47134 2.45971 1.60974 2.40311 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.68467 1.69825 2.40133 0.41832 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.52010 0.28105 3.08863 2.12867 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.68281 1.69822 2.40062 0.41861 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.80570 2.62096 0.38314 2.51094 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.80594 2.62136 0.38297 2.51151 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.47111 2.46030 1.60978 2.40404 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.68639 1.69827 2.40198 0.41804 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.41349 2.95766 0.21857 2.90237 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.68553 1.69826 2.40165 0.41818 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.41291 2.95706 0.21874 2.90151 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.39901 2.94273 0.22265 2.88099 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.36052 2.36784 2.86611 0.28100 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.36052 2.36784 2.86611 0.28100 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.41144 2.95555 0.21915 2.89934 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 1.80573 2.62101 0.38312 2.51102 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.92815 0.31645 2.66711 1.90838 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.69334 1.45185 2.44864 0.49136 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.52010 0.28105 3.08863 2.12867 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.36052 2.36784 2.86611 0.28100 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41726 3.25272 0.20703 2.82730 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.41726 3.25272 0.20703 2.82730 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.52010 0.28105 3.08863 2.12867 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.95857 2.62199 0.35757 2.44291 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.18438 2.83542 0.27355 2.68702 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.73326 1.68369 2.42750 0.41393 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.12790 0.25500 2.79319 2.11986 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.52010 0.28105 3.08863 2.12867 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.36052 2.36784 2.86611 0.28100 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.11689 0.25631 2.78872 2.11774 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.36052 2.36784 2.86611 0.28100 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.11436 0.25661 2.78768 2.11725 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.47564 2.58036 1.53501 2.43828 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.11643 0.25636 2.78853 2.11765 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47544 2.58097 1.53501 2.43911 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.63560 1.87361 2.27542 0.39749 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.73152 1.68368 2.42684 0.41419 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.73319 1.68369 2.42747 0.41394 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.47469 2.58338 1.53504 2.44235 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.52010 0.28105 3.08863 2.12867 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.47578 2.57991 1.53500 2.43768 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.63262 1.87340 2.27446 0.39801 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.47565 2.58031 1.53501 2.43822 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.72808 1.68365 2.42556 0.41471 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.72894 1.68366 2.42588 0.41458 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.11929 0.25602 2.78969 2.11821 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.47517 2.58184 1.53502 2.44028 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.12409 0.25545 2.79164 2.11913 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.20841 2.96923 2.72023 2.64618 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.41726 3.25272 0.20703 2.82730 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //