INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2229 ACC RF03827 DESC mir-2229 microRNA precursor family STATES 190 NODES 45 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 10:00:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03827/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.340820 CKSUM 447188621 NULL 0.000 0.000 0.000 0.000 GA 65.00 TC 65.60 NC 64.90 EFP7GF -7.8540 0.72302 ECMLC 0.66131 -5.60249 3.32039 1600000 438397 0.002737 ECMGC 0.39375 -17.22370 -2.51406 1600000 131050 0.003052 ECMLI 0.66260 -3.31969 4.82070 1600000 264041 0.004545 ECMGI 0.44362 -11.56863 0.51675 1600000 85197 0.004695 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 97 -7.107 -7.314 -0.048 -5.728 IL 1 1 2 1 4 1 21 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 20 78 98 -8.494 -0.017 -6.812 1.776 -2.673 -2.275 -2.246 D 4 2 3 5 3 0 16 76 96 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 20 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - A - - MR 6 5 3 8 3 1 19 77 97 -8.494 -0.017 -6.812 1.776 -2.673 -2.275 -2.246 D 7 5 3 8 3 0 15 75 95 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 19 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - G - - MR 9 8 3 11 3 1 19 76 96 -8.494 -0.017 -6.812 -1.896 -3.162 1.786 -2.550 D 10 8 3 11 3 0 14 74 94 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 18 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - g - - MR 12 11 3 14 5 1 18 75 95 -7.224 -0.036 -7.039 -7.252 -8.143 -0.527 -1.206 0.815 0.155 D 13 11 3 14 5 0 13 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 16 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 59 C G - - MP 15 14 3 19 6 2 17 74 93 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.877 -4.811 -4.511 -1.016 -3.160 -4.879 3.641 -4.003 -4.573 -0.818 -4.796 -2.764 0.318 -4.924 -0.877 -3.402 ML 16 14 3 19 6 1 14 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 13 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 10 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 15 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 15 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 58 A U - - MP 21 20 6 25 6 2 15 72 91 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.066 -3.030 -4.062 3.484 -4.541 -5.633 -0.222 -4.085 -3.945 0.781 -4.506 -0.464 -0.639 -4.773 -2.162 -2.881 ML 22 20 6 25 6 1 13 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 12 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 10 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 14 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 14 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 57 G C - - MP 27 26 6 31 4 2 13 70 89 -7.107 -7.314 -0.048 -5.728 -5.036 -3.235 -5.168 0.001 -5.646 -4.806 -0.937 -5.428 -4.514 3.701 -4.831 -0.947 -1.315 -4.659 -2.991 -4.040 ML 28 26 6 31 4 1 12 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 11 70 90 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 9 69 89 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 13 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 5 - U - - - ML 33 32 6 35 3 1 11 67 87 -8.113 -0.019 -6.767 -1.765 -1.713 -2.512 1.690 D 34 32 6 35 3 0 9 66 86 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 6 - U - - - ML 36 35 3 38 3 1 10 66 86 -8.494 -0.303 -2.420 -1.765 -1.713 -2.512 1.690 D 37 35 3 38 3 0 8 65 85 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 12 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 56 - a - - MR 39 38 3 41 3 1 12 65 85 -8.211 -0.021 -6.529 0.644 0.136 -1.004 -0.250 D 40 38 3 41 3 0 6 64 84 -7.787 -0.418 -2.016 IR 41 41 3 41 3 1 10 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 55 - u - - MR 42 41 3 44 5 1 11 64 84 -7.224 -0.036 -7.039 -7.252 -8.143 -0.500 -0.967 -0.109 0.891 D 43 41 3 44 5 0 4 63 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 8 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 54 c g - - MP 45 44 3 49 6 2 11 63 83 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -3.948 -3.942 -3.758 -0.215 -2.593 -4.256 2.964 -3.346 -3.782 -0.024 -4.131 -1.983 1.003 -4.057 1.690 -2.650 ML 46 44 3 49 6 1 6 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 5 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 1 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 53 c g - - MP 51 50 6 55 6 2 10 61 81 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -3.882 -3.820 -3.730 -0.034 -2.606 -4.278 2.913 -3.335 -3.737 0.193 -4.113 -1.776 2.117 -4.007 -0.269 -2.591 ML 52 50 6 55 6 1 5 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 5 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 7 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 52 c g - - MP 57 56 6 61 6 2 8 59 79 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -2.925 0.779 -3.017 0.649 -2.550 -3.735 2.594 -3.024 -3.008 0.998 -3.474 -0.778 1.085 -3.182 -0.353 -2.028 ML 58 56 6 61 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 6 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 51 a u - - MP 63 62 6 67 4 2 7 57 77 -7.011 -8.257 -0.073 -4.710 -3.149 -2.761 -3.206 2.295 -2.855 -4.057 1.374 -3.239 -3.215 1.264 -3.713 -0.596 1.847 -3.411 -0.588 -2.162 ML 64 62 6 67 4 1 2 57 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 3 57 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 1 55 74 -12.737 -14.007 -2.036 -0.404 IL 67 67 5 67 4 1 4 57 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 5 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 50 - a - - MR 69 68 6 71 5 1 6 55 75 -7.224 -0.036 -7.039 -7.252 -8.143 0.917 -1.026 -1.153 0.229 D 70 68 6 71 5 0 0 54 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 4 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 49 C G - - MP 72 71 3 76 6 2 7 54 74 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -3.773 -3.831 -3.642 -0.226 1.238 -4.180 3.023 -3.323 -3.678 -0.096 -4.051 -1.987 0.943 -3.923 -0.326 -2.595 ML 73 71 3 76 6 1 2 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 2 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 3 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 48 A U - - MP 78 77 6 82 6 2 5 52 72 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.066 -3.030 -4.062 3.484 -4.541 -5.633 -0.222 -4.085 -3.945 0.781 -4.506 -0.464 -0.639 -4.773 -2.162 -2.881 ML 79 77 6 82 6 1 2 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 2 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 47 G C - - MP 84 83 6 88 4 2 4 50 70 -7.107 -7.314 -0.048 -5.728 -5.036 -3.235 -5.168 0.001 -5.646 -4.806 -0.937 -5.428 -4.514 3.701 -4.831 -0.947 -1.315 -4.659 -2.991 -4.040 ML 85 83 6 88 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 2 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - g - - - ML 90 89 6 92 3 1 3 48 67 -8.113 -0.019 -6.767 -0.538 -1.225 0.845 0.121 D 91 89 6 92 3 0 0 47 66 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - g - - - ML 93 92 3 95 3 1 2 47 66 -8.494 -0.017 -6.812 -0.538 -1.225 0.845 0.121 D 94 92 3 95 3 0 0 46 65 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 46 - A - - MR 96 95 3 98 5 1 1 46 65 -7.224 -0.036 -7.039 -7.252 -8.143 1.776 -2.673 -2.275 -2.246 D 97 95 3 98 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 45 C G - - MP 99 98 3 103 6 2 3 45 64 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.877 -4.811 -4.511 -1.016 -3.160 -4.879 3.641 -4.003 -4.573 -0.818 -4.796 -2.764 0.318 -4.924 -0.877 -3.402 ML 100 98 3 103 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 44 U A - - MP 105 104 6 109 6 2 2 43 62 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.549 -4.381 -4.347 -0.652 -3.215 -4.877 1.119 -3.935 -4.348 -0.446 -4.703 -2.269 3.475 -4.685 -0.883 -3.133 ML 106 104 6 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 43 U A - - MP 111 110 6 115 6 2 2 41 60 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.549 -4.381 -4.347 -0.652 -3.215 -4.877 1.119 -3.935 -4.348 -0.446 -4.703 -2.269 3.475 -4.685 -0.883 -3.133 ML 112 110 6 115 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 42 U A - - MP 117 116 6 121 6 2 2 39 58 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.549 -4.381 -4.347 -0.652 -3.215 -4.877 1.119 -3.935 -4.348 -0.446 -4.703 -2.269 3.475 -4.685 -0.883 -3.133 ML 118 116 6 121 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 41 c g - - MP 123 122 6 127 4 2 2 37 56 -7.107 -7.314 -0.048 -5.728 -3.284 -3.227 -3.290 0.138 -2.550 -3.917 2.898 -3.165 -3.307 0.327 1.029 -1.427 0.960 -3.508 -0.350 -2.309 ML 124 122 6 127 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - c - - - ML 129 128 6 131 3 1 1 35 54 -8.494 -0.017 -6.812 0.295 0.685 -1.329 -0.383 D 130 128 6 131 3 0 0 33 52 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 35 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 40 - U - - MR 132 131 3 134 5 1 1 34 53 -7.224 -0.036 -7.039 -7.252 -8.143 -1.765 -1.713 -2.512 1.690 D 133 131 3 134 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 39 A U - - MP 135 134 3 139 6 2 2 33 52 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -4.066 -3.030 -4.062 3.484 -4.541 -5.633 -0.222 -4.085 -3.945 0.781 -4.506 -0.464 -0.639 -4.773 -2.162 -2.881 ML 136 134 3 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 38 C G - - MP 141 140 6 145 4 2 2 31 50 -7.107 -7.314 -0.048 -5.728 -4.877 -4.811 -4.511 -1.016 -3.160 -4.879 3.641 -4.003 -4.573 -0.818 -4.796 -2.764 0.318 -4.924 -0.877 -3.402 ML 142 140 6 145 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - A - - - ML 147 146 6 149 3 1 1 28 47 -8.494 -0.017 -6.812 1.028 -1.530 0.141 -0.967 D 148 146 6 149 3 0 0 27 46 -5.620 -0.734 -1.403 IL 149 149 3 149 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - C - - MR 150 149 3 152 5 1 1 27 46 -7.224 -0.036 -7.039 -7.252 -8.143 -2.106 1.709 -2.937 -1.447 D 151 149 3 152 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 25 36 C G - - MP 153 152 3 157 6 2 2 26 45 -9.170 -9.110 -0.020 -7.886 -8.166 -8.561 -3.769 -3.828 -3.636 -0.224 1.291 -4.173 3.005 -3.316 -3.672 -0.095 -4.045 -1.986 0.948 -3.918 -0.318 -2.590 ML 154 152 3 157 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 35 U A - - MP 159 158 6 163 4 2 2 24 43 -7.107 -7.314 -0.048 -5.728 -4.549 -4.381 -4.347 -0.652 -3.215 -4.877 1.119 -3.935 -4.348 -0.446 -4.703 -2.269 3.475 -4.685 -0.883 -3.133 ML 160 158 6 163 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 27 - C - - - ML 165 164 6 167 3 1 1 21 40 -8.113 -0.019 -6.767 -2.106 1.709 -2.937 -1.447 D 166 164 6 167 3 0 0 20 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 28 - A - - - ML 168 167 3 170 3 1 1 20 39 -8.113 -0.019 -6.767 1.776 -2.673 -2.275 -2.246 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 29 - c - - - ML 171 170 3 173 3 1 1 19 37 -8.113 -0.019 -6.767 -0.938 0.942 -1.759 0.335 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - u - - - ML 174 173 3 176 3 1 1 17 36 -8.113 -0.019 -6.767 0.203 -0.922 -1.232 0.922 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - g - - - ML 177 176 3 179 3 1 1 16 35 -8.113 -0.019 -6.767 0.347 -1.656 0.952 -1.070 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - A - - - ML 180 179 3 182 3 1 1 15 33 -8.113 -0.019 -6.767 1.776 -2.673 -2.275 -2.246 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 33 - g - - - ML 183 182 3 185 3 1 1 13 31 -8.113 -0.019 -6.767 0.378 -1.643 0.926 -1.057 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 34 - A - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 1.776 -2.673 -2.275 -2.246 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2229 ACC RF03827 DESC mir-2229 microRNA precursor family LENG 62 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 10:00:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03827/CM NSEQ 3 EFFN 2.791992 CKSUM 447188621 STATS LOCAL MSV -8.3974 0.72302 STATS LOCAL VITERBI -8.8353 0.72302 STATS LOCAL FORWARD -3.4570 0.72302 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26645 1.48740 1.40334 1.40066 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.12410 3.44559 3.14989 3.17095 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.41135 0.19377 3.21003 2.27496 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.26591 3.03117 2.01742 2.95207 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.71977 3.44831 0.14100 3.38655 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.80523 2.73638 3.32977 0.17566 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.80523 2.73638 3.32977 0.17566 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.79905 0.64948 2.59508 1.07243 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.66234 0.68762 2.42423 1.08205 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 1.47157 0.84717 1.88500 1.66083 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 1.04003 1.77606 1.68203 1.23355 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.80177 0.35952 2.63072 1.77630 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.26734 3.02387 2.01582 2.94198 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.71379 3.44062 0.14216 3.37601 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 1.83198 2.31463 0.75103 1.31222 14 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 1.83198 2.31463 0.75103 1.31222 15 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.41070 0.19383 3.20970 2.27484 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.21296 2.08577 2.98759 0.24189 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.21249 2.08574 2.98736 0.24193 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.21148 2.08566 2.98688 0.24203 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.56035 0.68670 1.40724 1.74487 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 1.18120 0.86316 2.39350 1.71506 21 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.26606 3.03036 2.01724 2.95096 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.41147 0.19376 3.21009 2.27498 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.64280 2.54934 1.26828 2.16514 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.82154 0.35661 2.64112 1.77691 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.21333 2.08580 2.98776 0.24185 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.09609 0.15737 3.67068 2.59120 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.12410 3.44559 3.14989 3.17095 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.13925 0.68565 2.72159 1.16244 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 1.24689 2.08735 2.30532 0.71568 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 1.14501 2.64075 0.68493 2.24104 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.12410 3.44559 3.14989 3.17095 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 1.12219 2.63095 0.70319 2.23100 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.12410 3.44559 3.14989 3.17095 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.27373 3.17961 1.92296 2.96253 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 1.22204 2.80646 0.56122 2.59780 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.09609 0.15737 3.67068 2.59120 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.55818 3.38234 0.16615 3.17799 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.18868 2.33754 2.84559 0.21802 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.80523 2.73638 3.32977 0.17566 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.00692 2.51932 0.37358 2.33492 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.27432 3.17593 1.92245 2.95828 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.27408 3.17745 1.92266 2.96004 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.27375 3.17952 1.92295 2.96242 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.56081 3.38620 0.16554 3.18249 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 0.12410 3.44559 3.14989 3.17095 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 3.57497 0.16835 3.28514 2.41364 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 3.17512 2.33558 2.84006 0.21936 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 1.24361 2.80163 0.55142 2.59276 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 0.72253 2.15586 2.24698 1.22772 50 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 1.36313 1.87139 1.60416 0.94373 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 1.90357 1.40835 0.76435 1.96055 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 1.21602 2.59467 0.61419 2.43223 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.02663 2.76644 0.31518 2.58127 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 1.79629 2.12083 1.45082 0.73444 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.26712 3.95124 1.53624 1.46634 0.26236 1.09861 0.40547 56 0.91885 1.26593 2.13564 1.60507 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.04902 3.73314 3.73314 1.46634 0.26236 0.16444 1.88629 57 3.58573 0.16756 3.29009 2.41566 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 3.18357 2.33680 2.84351 0.21852 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 2.56090 3.38632 0.16552 3.18263 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 1.82276 2.29985 0.77215 1.28689 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 2.90933 3.81414 0.11692 3.38811 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 0.12410 3.44559 3.14989 3.17095 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //