INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR5285 ACC RF03824 DESC MIR5285 microRNA precursor family STATES 193 NODES 47 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 20:36:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03824/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.542969 CKSUM 3832507767 NULL 0.000 0.000 0.000 0.000 GA 88.50 TC 88.70 NC 88.30 EFP7GF -5.9855 0.72585 ECMLC 0.66051 -5.24103 3.55231 1600000 399581 0.003003 ECMGC 0.45529 -15.28783 -2.39633 1600000 141614 0.002825 ECMLI 0.67611 -3.04600 5.00196 1600000 276904 0.004334 ECMGI 0.49122 -10.37063 0.68795 1600000 91458 0.004374 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.711 -7.956 -0.090 -4.410 IL 1 1 2 1 4 1 16 81 100 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 63 - U - - MR 3 2 3 5 3 1 19 79 99 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 4 2 3 5 3 0 12 78 97 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - U - - MR 6 5 3 8 5 1 18 78 98 -6.959 -0.043 -6.775 -6.987 -7.878 -1.205 -1.252 -1.923 1.527 D 7 5 3 8 5 0 11 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 15 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 61 G C - - MP 9 8 3 13 6 2 19 77 97 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 10 8 3 13 6 1 13 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 13 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 8 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 15 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 15 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 60 a u - - MP 15 14 6 19 6 2 17 75 95 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.176 -2.254 -3.288 2.310 -3.751 -4.465 0.472 -3.473 -3.175 1.771 -3.704 1.846 0.198 -3.643 -1.422 -2.151 ML 16 14 6 19 6 1 12 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 12 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 8 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 14 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 59 G C - - MP 21 20 6 25 6 2 16 73 93 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 22 20 6 25 6 1 12 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 11 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 7 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 58 A U - - MP 27 26 6 31 6 2 14 71 91 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 28 26 6 31 6 1 11 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 7 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 57 u a - - MP 33 32 6 37 4 2 12 69 89 -6.780 -6.987 -0.060 -5.401 -2.707 -2.635 -2.785 0.754 -2.335 -3.552 1.706 -2.830 -2.821 1.042 -3.318 -0.781 2.116 -2.965 -0.180 0.955 ML 34 32 6 37 4 1 10 69 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 8 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 6 68 88 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 11 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 11 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - U - - - ML 39 38 6 41 3 1 11 67 86 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 40 38 6 41 3 0 6 65 85 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 10 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - G - - - ML 42 41 3 44 3 1 10 66 85 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 43 41 3 44 3 0 5 64 84 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 9 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - G - - - ML 45 44 3 47 3 1 9 65 84 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 46 44 3 47 3 0 4 63 83 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 9 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - G - - - ML 48 47 3 50 3 1 8 64 83 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 49 47 3 50 3 0 4 62 82 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 51 50 3 53 3 1 7 62 82 -8.210 -0.021 -6.528 1.643 -2.061 -1.725 -1.575 D 52 50 3 53 3 0 3 61 81 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 7 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - U - - MR 54 53 3 56 3 1 6 61 81 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 55 53 3 56 3 0 2 60 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - A - - MR 57 56 3 59 5 1 6 60 80 -6.959 -0.043 -6.775 -6.987 -7.878 1.643 -2.061 -1.725 -1.575 D 58 56 3 59 5 0 1 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 4 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 54 C G - - MP 60 59 3 64 4 2 5 59 79 -6.780 -6.987 -0.060 -5.401 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 61 59 3 64 4 1 2 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 3 64 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 4 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 3 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 66 65 6 68 3 1 4 57 76 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 67 65 6 68 3 0 0 56 75 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - U - - - ML 69 68 3 71 3 1 3 56 75 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 70 68 3 71 3 0 0 55 74 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 53 - U - - MR 72 71 3 74 3 1 2 55 74 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 73 71 3 74 3 0 0 53 73 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 52 - U - - MR 75 74 3 77 5 1 2 54 73 -6.959 -0.043 -6.775 -6.987 -7.878 -1.205 -1.252 -1.923 1.527 D 76 74 3 77 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 51 U A - - MP 78 77 3 82 6 2 4 53 72 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 79 77 3 82 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 50 G C - - MP 84 83 6 88 6 2 3 51 70 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 85 83 6 88 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 49 G C - - MP 90 89 6 94 6 2 3 49 68 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 91 89 6 94 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 48 G C - - MP 96 95 6 100 6 2 3 47 66 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 97 95 6 100 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 47 U A - - MP 102 101 6 106 4 2 2 45 64 -6.711 -7.956 -0.090 -4.410 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 103 101 6 106 4 1 1 44 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 44 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 42 61 -12.737 -14.007 -2.036 -0.404 IL 106 106 5 106 4 1 1 44 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 46 - A - - MR 108 107 6 110 3 1 1 43 62 -8.210 -0.021 -6.528 1.643 -2.061 -1.725 -1.575 D 109 107 6 110 3 0 0 41 60 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 45 - U - - MR 111 110 3 113 3 1 1 42 61 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 112 110 3 113 3 0 0 40 59 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 44 - G - - MR 114 113 3 116 3 1 1 41 60 -8.210 -0.021 -6.528 -1.249 -2.414 1.634 -1.799 D 115 113 3 116 3 0 0 39 59 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 43 - U - - MR 117 116 3 119 5 1 1 40 59 -6.959 -0.043 -6.775 -6.987 -7.878 -1.205 -1.252 -1.923 1.527 D 118 116 3 119 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 42 A U - - MP 120 119 3 124 6 2 2 39 58 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 121 119 3 124 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 41 G C - - MP 126 125 6 130 6 2 2 37 56 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 127 125 6 130 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 40 A U - - MP 132 131 6 136 6 2 2 35 54 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 133 131 6 136 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 39 A U - - MP 138 137 6 142 6 2 2 33 52 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 139 137 6 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 38 U A - - MP 144 143 6 148 4 2 2 31 50 -6.780 -6.987 -0.060 -5.401 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 145 143 6 148 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 24 - U - - - ML 150 149 6 152 3 1 1 28 47 -8.210 -0.021 -6.528 -1.205 -1.252 -1.923 1.527 D 151 149 6 152 3 0 0 27 46 -5.620 -0.734 -1.403 IL 152 152 3 152 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 37 - U - - MR 153 152 3 155 5 1 1 27 46 -6.959 -0.043 -6.775 -6.987 -7.878 -1.205 -1.252 -1.923 1.527 D 154 152 3 155 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 36 A U - - MP 156 155 3 160 6 2 2 26 45 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 157 155 3 160 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 35 G C - - MP 162 161 6 166 4 2 2 24 43 -6.780 -6.987 -0.060 -5.401 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 163 161 6 166 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - G - - - ML 168 167 6 170 3 1 1 21 40 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 169 167 6 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - C - - - ML 171 170 3 173 3 1 1 20 39 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - G - - - ML 174 173 3 176 3 1 1 19 38 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - a - - - ML 177 176 3 179 3 1 1 18 36 -7.809 -0.023 -6.463 0.674 -1.266 0.445 -0.673 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - a - - - ML 180 179 3 182 3 1 1 16 35 -7.809 -0.023 -6.463 0.674 -1.266 0.445 -0.673 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - G - - - ML 186 185 3 188 3 1 1 13 32 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.643 -2.061 -1.725 -1.575 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR5285 ACC RF03824 DESC MIR5285 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 20:36:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03824/CM NSEQ 2 EFFN 1.660156 CKSUM 3832507767 STATS LOCAL MSV -7.7375 0.72585 STATS LOCAL VITERBI -9.1353 0.72585 STATS LOCAL FORWARD -2.9873 0.72585 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48040 1.62897 1.27184 1.21737 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35257 2.85778 0.23979 2.80205 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.06751 2.34672 0.79869 2.20242 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.35810 2.86318 0.23813 2.80992 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.52068 2.36773 1.54461 2.31472 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.01676 1.47946 1.74274 0.76763 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.28189 2.30334 2.78294 0.30635 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.32438 3.14435 0.23183 2.71838 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.32438 3.14435 0.23183 2.71838 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.32438 3.14435 0.23183 2.71838 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.22968 2.88233 2.64209 2.55115 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.84017 0.34611 2.56927 1.84794 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.28189 2.30334 2.78294 0.30635 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.28189 2.30334 2.78294 0.30635 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.60068 1.64100 2.30636 0.45828 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.35909 2.86415 0.23783 2.81132 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35975 2.86479 0.23763 2.81226 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.35980 2.86484 0.23762 2.81233 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.60418 1.64099 2.30762 0.45768 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.52172 2.36535 1.54455 2.31085 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.35683 2.86194 0.23851 2.80811 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.52075 2.36757 1.54460 2.31446 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.52065 2.36779 1.54461 2.31483 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.60326 1.64100 2.30729 0.45784 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.28189 2.30334 2.78294 0.30635 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.52103 2.36692 1.54459 2.31341 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.35895 2.86401 0.23787 2.81113 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.32438 3.14435 0.23183 2.71838 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.41657 0.31356 2.98081 2.04656 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.32438 3.14435 0.23183 2.71838 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.91183 2.29141 1.06503 1.88145 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.91183 2.29141 1.06503 1.88145 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.22968 2.88233 2.64209 2.55115 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.32438 3.14435 0.23183 2.71838 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.22968 2.88233 2.64209 2.55115 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.03552 0.27722 2.69692 2.06635 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.55150 1.79942 2.18527 0.43976 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.28189 2.30334 2.78294 0.30635 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.52129 2.48444 1.47760 2.35718 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.54685 1.79919 2.18386 0.44063 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.54766 1.79923 2.18410 0.44048 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.03301 0.27754 2.69593 2.06587 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.54980 1.79933 2.18475 0.44008 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.28189 2.30334 2.78294 0.30635 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.32438 3.14435 0.23183 2.71838 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.28189 2.30334 2.78294 0.30635 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.22968 2.88233 2.64209 2.55115 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.52117 2.48477 1.47759 2.35764 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.03154 0.27774 2.69535 2.06558 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.03341 0.27749 2.69609 2.06595 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.03568 0.27719 2.69699 2.06639 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.52049 2.48669 1.47753 2.36034 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.28189 2.30334 2.78294 0.30635 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.28189 2.30334 2.78294 0.30635 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.12519 2.74063 0.29812 2.60571 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.22968 2.88233 2.64209 2.55115 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.28189 2.30334 2.78294 0.30635 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.18644 1.91283 1.30538 1.28750 57 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.54669 1.79918 2.18381 0.44066 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.03087 0.27783 2.69509 2.06545 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.42707 1.48661 2.15455 0.56280 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.03458 0.27734 2.69655 2.06617 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.28189 2.30334 2.78294 0.30635 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.28189 2.30334 2.78294 0.30635 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //