INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR1886 ACC RF03803 DESC MIR1886 microRNA precursor family STATES 160 NODES 34 CLEN 52 W 66 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 15:36:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03803/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.496094 CKSUM 3829019395 NULL 0.000 0.000 0.000 0.000 GA 62.00 TC 62.00 NC 61.90 EFP7GF -11.4016 0.71972 ECMLC 0.64661 -5.36160 3.79575 1600000 447454 0.002682 ECMGC 0.47430 -14.50096 -0.06102 1600000 377138 0.001061 ECMLI 0.60558 -4.84526 4.49471 1600000 343246 0.003496 ECMGI 0.50902 -10.82321 1.89258 1600000 258857 0.001545 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 66 84 -7.063 -8.309 -0.317 -2.422 IL 1 1 2 1 4 1 1 67 86 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 68 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - G - - MR 3 2 3 5 3 1 1 66 85 -8.322 -0.019 -6.639 -1.505 -2.713 1.706 -2.099 D 4 2 3 5 3 0 0 65 83 -7.625 -0.477 -1.854 IR 5 5 3 5 3 1 1 67 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - U - - MR 6 5 3 8 5 1 1 65 84 -7.270 -0.248 -7.086 -2.832 -8.190 -1.865 -1.796 -2.616 1.711 D 7 5 3 8 5 0 0 64 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 10 59 U A - - MP 9 8 3 13 6 2 2 64 83 -9.093 -9.032 -0.021 -7.809 -8.089 -8.484 -4.119 -3.942 -3.965 -0.242 -2.923 -4.536 1.404 -3.613 -3.971 0.022 -4.348 -1.843 3.293 -4.273 -0.600 -2.802 ML 10 8 3 13 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 63 81 -7.855 -6.584 -0.667 -6.563 -1.696 -4.776 1.302 -1.253 -0.989 -0.711 D 12 8 3 13 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 64 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 11 58 G C - - MP 15 14 6 19 6 2 2 62 81 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -5.137 -3.285 -5.284 -0.070 -5.787 -4.844 -1.053 -5.547 -4.576 3.720 -4.887 -1.002 -1.429 -4.724 -3.113 -4.155 ML 16 14 6 19 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 62 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 12 57 A U - - MP 21 20 6 25 6 2 2 60 79 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.166 -3.107 -4.152 3.529 -4.685 -5.790 -0.359 -4.168 -4.034 0.673 -4.600 -0.527 -0.775 -4.910 -2.299 -2.968 ML 22 20 6 25 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 60 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 13 56 G C - - MP 27 26 6 31 6 2 2 58 77 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -5.137 -3.285 -5.284 -0.070 -5.787 -4.844 -1.053 -5.547 -4.576 3.720 -4.887 -1.002 -1.429 -4.724 -3.113 -4.155 ML 28 26 6 31 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 58 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 14 55 A U - - MP 33 32 6 37 6 2 2 56 75 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.166 -3.107 -4.152 3.529 -4.685 -5.790 -0.359 -4.168 -4.034 0.673 -4.600 -0.527 -0.775 -4.910 -2.299 -2.968 ML 34 32 6 37 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 15 54 U A - - MP 39 38 6 43 6 2 2 54 73 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.683 -4.517 -4.465 -0.780 -3.307 -4.982 1.028 -4.035 -4.465 -0.589 -4.814 -2.400 3.520 -4.813 -0.972 -3.234 ML 40 38 6 43 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 16 53 G C - - MP 45 44 6 49 6 2 2 52 71 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -5.137 -3.285 -5.284 -0.070 -5.787 -4.844 -1.053 -5.547 -4.576 3.720 -4.887 -1.002 -1.429 -4.724 -3.113 -4.155 ML 46 44 6 49 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 17 52 A U - - MP 51 50 6 55 6 2 2 50 69 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.166 -3.107 -4.152 3.529 -4.685 -5.790 -0.359 -4.168 -4.034 0.673 -4.600 -0.527 -0.775 -4.910 -2.299 -2.968 ML 52 50 6 55 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 18 51 a u - - MP 57 56 6 61 6 2 2 48 67 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -3.599 -2.523 -3.728 2.552 -4.510 -5.174 -0.227 -3.888 -3.532 1.338 -4.087 2.307 -0.457 -4.247 -2.116 -2.518 ML 58 56 6 61 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 19 50 A U - - MP 63 62 6 67 6 2 2 46 65 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.166 -3.107 -4.152 3.529 -4.685 -5.790 -0.359 -4.168 -4.034 0.673 -4.600 -0.527 -0.775 -4.910 -2.299 -2.968 ML 64 62 6 67 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 20 49 U A - - MP 69 68 6 73 6 2 2 44 63 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.683 -4.517 -4.465 -0.780 -3.307 -4.982 1.028 -4.035 -4.465 -0.589 -4.814 -2.400 3.520 -4.813 -0.972 -3.234 ML 70 68 6 73 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 21 48 c g - - MP 75 74 6 79 6 2 2 42 61 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.043 -4.056 -3.829 -0.339 -2.637 -4.304 2.802 -3.402 -3.860 -0.160 -4.196 -2.120 0.925 -4.142 2.133 -2.728 ML 76 74 6 79 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 22 47 A U - - MP 81 80 6 85 6 2 2 40 59 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.166 -3.107 -4.152 3.529 -4.685 -5.790 -0.359 -4.168 -4.034 0.673 -4.600 -0.527 -0.775 -4.910 -2.299 -2.968 ML 82 80 6 85 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 23 46 g c - - MP 87 86 6 91 6 2 2 38 57 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -3.459 -2.473 -3.503 2.317 -4.084 -4.495 0.246 -3.815 -3.522 2.403 -4.001 1.193 -0.012 -3.698 -1.662 -2.411 ML 88 86 6 91 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 24 45 C G - - MP 93 92 6 97 6 2 2 36 55 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.015 -3.958 -3.832 -0.152 -2.657 -4.352 3.059 -3.403 -3.841 0.066 -4.200 -1.908 1.931 -4.125 -0.317 -2.685 ML 94 92 6 97 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 25 44 G C - - MP 99 98 6 103 6 2 2 34 53 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.212 -2.818 -4.235 0.650 -5.014 -4.663 -0.373 -4.620 -4.094 3.354 -4.474 0.976 -0.650 -4.136 -2.365 -3.126 ML 100 98 6 103 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 26 43 U A - - MP 105 104 6 109 4 2 2 32 51 -7.063 -8.309 -0.070 -4.762 -4.683 -4.517 -4.465 -0.780 -3.307 -4.982 1.028 -4.035 -4.465 -0.589 -4.814 -2.400 3.520 -4.813 -0.972 -3.234 ML 106 104 6 109 4 1 1 31 50 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 31 50 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 29 48 -12.737 -14.007 -2.036 -0.404 IL 109 109 5 109 4 1 1 31 50 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 42 - U - - MR 111 110 6 113 3 1 1 30 49 -8.543 -0.016 -6.861 -0.975 -0.110 -1.738 1.179 D 112 110 6 113 3 0 0 28 47 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 41 - U - - MR 114 113 3 116 3 1 1 29 48 -8.543 -0.016 -6.861 -1.865 -1.796 -2.616 1.711 D 115 113 3 116 3 0 0 27 46 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 40 - U - - MR 117 116 3 119 3 1 1 28 47 -8.543 -0.016 -6.861 -1.865 -1.796 -2.616 1.711 D 118 116 3 119 3 0 0 26 45 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 39 - U - - MR 120 119 3 122 5 1 1 27 45 -7.270 -0.034 -7.086 -7.298 -8.190 -1.865 -1.796 -2.616 1.711 D 121 119 3 122 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 27 38 U A - - MP 123 122 3 127 6 2 2 26 44 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.683 -4.517 -4.465 -0.780 -3.307 -4.982 1.028 -4.035 -4.465 -0.589 -4.814 -2.400 3.520 -4.813 -0.972 -3.234 ML 124 122 3 127 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 28 37 U G - - MP 129 128 6 133 6 2 2 24 42 -9.193 -9.133 -0.020 -7.909 -8.189 -8.584 -4.507 -4.444 -4.114 -0.740 -2.752 -4.472 1.542 -3.561 -4.159 -0.617 -4.408 -2.433 0.639 -4.552 3.232 -3.010 ML 130 128 6 133 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 29 36 g c - - MP 135 134 6 139 4 2 2 22 40 -7.163 -7.370 -0.046 -5.784 -3.914 -2.656 -3.961 0.869 -4.741 -4.739 -0.199 -4.270 -3.853 2.988 -4.290 1.881 -0.467 -4.075 -2.163 -2.815 ML 136 134 6 139 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - G - - - ML 141 140 6 143 3 1 1 19 37 -8.165 -0.018 -6.819 -2.004 -3.285 1.804 -2.673 D 142 140 6 143 3 0 0 18 37 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - A - - - ML 144 143 3 146 3 1 1 17 36 -8.165 -0.018 -6.819 1.794 -2.779 -2.371 -2.363 D 145 143 3 146 3 0 0 17 36 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - u - - - ML 147 146 3 149 3 1 1 16 35 -8.165 -0.018 -6.819 -0.876 0.564 -1.676 0.734 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 150 149 3 152 3 1 1 15 33 -8.165 -0.018 -6.819 1.794 -2.779 -2.371 -2.363 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - U - - - ML 153 152 3 155 3 1 1 13 31 -8.165 -0.018 -6.819 -1.865 -1.796 -2.616 1.711 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - G - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 0.031 -1.870 1.199 -1.291 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR1886 ACC RF03803 DESC MIR1886 microRNA precursor family LENG 52 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 15:36:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03803/CM NSEQ 4 EFFN 3.597656 CKSUM 3829019395 STATS LOCAL MSV -7.5387 0.71972 STATS LOCAL VITERBI -8.1362 0.71972 STATS LOCAL FORWARD -3.9092 0.71972 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37135 1.79328 1.44894 1.06420 1.38629 1.38629 1.38629 1.38629 0.71265 1.12114 1.69420 1.61530 0.22168 0.00000 * 1 3.10286 2.02474 2.88749 0.26483 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91038 3.91038 1.46634 0.26236 0.16689 1.87272 2 2.91064 3.72762 0.11011 3.65833 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 3 0.18320 3.42724 2.31432 3.32189 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 4 2.91622 3.73551 0.10926 3.66893 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 5 0.18271 3.43115 2.31529 3.32700 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 6 3.59529 2.40557 3.42079 0.16293 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 7 2.91993 3.74077 0.10870 3.67602 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 8 0.18237 3.43384 2.31596 3.33052 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 9 0.85213 3.27135 0.71886 3.03169 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 10 0.18226 3.43473 2.31618 3.33168 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 11 3.60121 2.40619 3.42392 0.16256 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 12 3.11034 0.74408 2.92480 0.85199 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 13 0.18217 3.43547 2.31636 3.33266 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 14 1.00112 2.74182 0.71025 2.56970 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 15 2.89973 0.54660 2.67459 1.21364 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 16 2.34940 3.18351 0.20446 3.03553 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 17 3.60322 2.40640 3.42498 0.16243 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 18 3.60864 2.40696 3.42784 0.16209 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 19 3.38158 1.84890 3.23223 0.26250 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 20 2.18368 3.09213 0.23807 2.92205 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 21 3.21588 4.15430 0.08345 3.71963 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 22 0.08888 3.76098 3.43764 3.51854 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 23 2.20524 0.91728 2.78342 0.84783 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 24 0.08888 3.76098 3.43764 3.51854 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 25 3.10979 2.99180 3.64283 0.12895 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 26 1.40444 2.94477 0.47031 2.56298 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 27 3.15116 0.65345 2.90032 0.96248 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 28 2.44100 3.42277 0.17877 3.12337 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 29 0.18235 3.63653 2.24506 3.36896 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 30 3.10979 2.99180 3.64283 0.12895 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 31 3.10979 2.99180 3.64283 0.12895 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 32 3.10979 2.99180 3.64283 0.12895 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 33 2.29868 1.45853 2.83908 0.49667 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 34 0.18435 3.61632 2.24159 3.34721 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 35 3.25524 0.37664 2.99933 1.48969 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 36 1.34609 2.84059 0.49201 2.65987 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 37 2.80097 1.08244 2.54439 0.65016 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 38 3.54202 2.66920 3.24079 0.14780 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 39 2.22781 3.08198 0.23598 2.87222 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 40 0.18457 3.61409 2.24120 3.34481 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 41 3.53794 2.66849 3.23894 0.14808 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 42 3.22283 2.09684 3.05447 0.23551 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 43 3.52954 2.66702 3.23511 0.14865 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 44 3.81294 0.13208 3.57528 2.60856 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 45 0.18670 3.59310 2.23752 3.32226 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 46 3.47890 2.65794 3.21168 0.15225 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 47 3.69493 0.13930 3.51439 2.58471 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 48 3.35664 2.63442 3.15248 0.16176 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 49 3.43460 0.15884 3.36789 2.52365 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 50 0.30488 2.97747 1.92073 2.72773 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09317 4.09317 1.46634 0.26236 1.09861 0.40547 51 3.10979 2.99180 3.64283 0.12895 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.22369 4.09317 1.69420 1.46634 0.26236 1.09861 0.40547 52 2.84585 3.74285 0.12558 3.31759 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.50962 0.91811 * 1.39827 0.28372 0.00000 * //