INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7143 ACC RF03801 DESC mir-7143 microRNA precursor family STATES 187 NODES 41 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:26:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03801/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.503906 CKSUM 3792146951 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 92.30 NC 89.50 EFP7GF -5.7021 0.72654 ECMLC 0.65519 -5.45588 3.41673 1600000 401653 0.002988 ECMGC 0.47592 -14.51620 -1.95223 1600000 158088 0.002530 ECMLI 0.63171 -4.36890 4.37179 1600000 300027 0.004000 ECMGI 0.50856 -10.00352 0.92383 1600000 103643 0.003859 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.762 -6.969 -0.061 -5.383 IL 1 1 2 1 4 1 9 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 9 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 9 77 96 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 4 2 3 5 3 0 4 75 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 8 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 8 76 95 -8.195 -0.021 -6.513 1.633 -2.029 -1.695 -1.539 D 7 5 3 8 3 0 3 74 94 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 7 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - A - - MR 9 8 3 11 3 1 7 75 94 -8.195 -0.021 -6.513 1.633 -2.029 -1.695 -1.539 D 10 8 3 11 3 0 2 73 93 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 6 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - G - - MR 12 11 3 14 3 1 7 74 93 -8.195 -0.021 -6.513 -1.214 -2.372 1.623 -1.757 D 13 11 3 14 3 0 1 72 92 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 5 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - U - - MR 15 14 3 17 3 1 6 73 92 -8.195 -0.021 -6.513 -1.176 -1.228 -1.891 1.517 D 16 14 3 17 3 0 1 71 91 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 5 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 58 - C - - MR 18 17 3 20 5 1 6 72 91 -6.945 -0.043 -6.760 -6.972 -7.864 -1.334 1.493 -2.140 -0.832 D 19 17 3 20 5 0 0 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 3 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 57 g c - - MP 21 20 3 25 6 2 7 71 90 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -2.854 -2.338 -2.979 1.008 -3.011 -3.747 0.921 -3.212 0.756 2.649 -3.451 -0.244 0.609 -3.100 -0.882 -2.026 ML 22 20 3 25 6 1 2 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 2 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 56 C G - - MP 27 26 6 31 6 2 7 69 88 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 28 26 6 31 6 1 2 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 55 U A - - MP 33 32 6 37 6 2 7 67 86 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 34 32 6 37 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 54 C G - - MP 39 38 6 43 6 2 6 65 84 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 40 38 6 43 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 53 A U - - MP 45 44 6 49 6 2 6 63 82 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 46 44 6 49 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 52 G C - - MP 51 50 6 55 6 2 5 61 80 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 52 50 6 55 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 51 C G - - MP 57 56 6 61 6 2 4 59 78 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 58 56 6 61 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 50 U A - - MP 63 62 6 67 4 2 3 57 76 -6.762 -6.969 -0.061 -5.383 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 64 62 6 67 4 1 1 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 57 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - C - - - ML 69 68 6 71 5 1 2 54 74 -6.945 -0.043 -6.760 -6.972 -7.864 -1.334 1.493 -2.140 -0.832 D 70 68 6 71 5 0 0 53 73 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 1 55 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 49 U A - - MP 72 71 3 76 4 2 2 53 73 -6.762 -6.969 -0.061 -5.383 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 73 71 3 76 4 1 1 54 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 4 1 1 53 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 3 76 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 55 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - G - - - ML 78 77 6 80 3 1 1 51 70 -8.195 -0.021 -6.513 -1.214 -2.372 1.623 -1.757 D 79 77 6 80 3 0 0 49 69 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 48 - G - - MR 81 80 3 83 5 1 1 50 69 -6.945 -0.043 -6.760 -6.972 -7.864 -1.214 -2.372 1.623 -1.757 D 82 80 3 83 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 47 A U - - MP 84 83 3 88 6 2 2 49 68 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 85 83 3 88 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 46 A U - - MP 90 89 6 94 6 2 2 47 66 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 45 G C - - MP 96 95 6 100 6 2 2 45 64 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 97 95 6 100 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 44 U A - - MP 102 101 6 106 6 2 2 43 62 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 103 101 6 106 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 43 G C - - MP 108 107 6 112 6 2 2 41 60 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 109 107 6 112 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 42 C G - - MP 114 113 6 118 6 2 2 39 58 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 115 113 6 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 41 A U - - MP 120 119 6 124 6 2 2 37 56 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 40 G C - - MP 126 125 6 130 6 2 2 35 54 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 39 a u - - MP 132 131 6 136 6 2 2 33 52 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.161 -2.245 -3.272 2.297 -3.723 -4.440 0.499 -3.457 -3.162 1.787 -3.690 1.822 0.223 -3.621 -1.396 -2.137 ML 133 131 6 136 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 38 G C - - MP 138 137 6 142 6 2 2 31 50 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 139 137 6 142 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 37 G C - - MP 144 143 6 148 4 2 2 29 48 -6.762 -6.969 -0.061 -5.383 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 145 143 6 148 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - C - - - ML 150 149 6 152 3 1 1 26 45 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 151 149 6 152 3 0 0 25 44 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - U - - - ML 153 152 3 155 3 1 1 25 44 -8.195 -0.021 -6.513 -1.176 -1.228 -1.891 1.517 D 154 152 3 155 3 0 0 24 42 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 36 - U - - MR 156 155 3 158 3 1 1 24 43 -8.195 -0.021 -6.513 -1.176 -1.228 -1.891 1.517 D 157 155 3 158 3 0 0 22 41 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 35 - U - - MR 159 158 3 161 5 1 1 23 42 -6.945 -0.043 -6.760 -6.972 -7.864 -1.176 -1.228 -1.891 1.517 D 160 158 3 161 5 0 0 22 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 161 161 3 161 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 34 g c - - MP 162 161 3 166 6 2 2 22 41 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.257 0.828 -3.348 1.033 -3.679 -4.035 0.466 -3.652 -3.308 2.902 -3.752 -0.130 0.186 -3.406 -1.392 -2.331 ML 163 161 3 166 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 3 166 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 33 U A - - MP 168 167 6 172 4 2 2 20 38 -6.762 -6.969 -0.061 -5.383 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 169 167 6 172 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 174 173 6 176 3 1 1 16 35 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 175 173 6 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - U - - - ML 177 176 3 179 3 1 1 15 33 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - G - - - ML 180 179 3 182 3 1 1 13 32 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - C - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.334 1.493 -2.140 -0.832 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7143 ACC RF03801 DESC mir-7143 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:26:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03801/CM NSEQ 2 EFFN 1.738281 CKSUM 3792146951 STATS LOCAL MSV -8.0313 0.72654 STATS LOCAL VITERBI -9.0672 0.72654 STATS LOCAL FORWARD -3.2297 0.72654 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56079 1.35320 1.27648 1.37595 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.21866 2.92615 2.68150 2.59903 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.21866 2.92615 2.68150 2.59903 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 1.89914 2.06904 0.53818 1.96479 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.88532 0.33069 2.61890 1.87827 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.64527 1.66936 2.35481 0.43737 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.88675 0.33047 2.61950 1.87849 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.49513 2.41400 1.57707 2.35944 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.38657 2.91157 0.22784 2.85750 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.88529 0.33070 2.61889 1.87827 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.64390 1.66936 2.35430 0.43759 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.46864 0.29669 3.03516 2.08783 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.64363 1.66935 2.35420 0.43764 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.37130 3.19920 0.21890 2.77351 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.49557 2.41294 1.57701 2.35775 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.49520 2.41383 1.57706 2.35918 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.38710 2.91211 0.22768 2.85828 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.64547 1.66936 2.35488 0.43733 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38691 2.91191 0.22774 2.85799 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.88592 0.33060 2.61915 1.87836 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.49523 2.41375 1.57705 2.35905 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.38604 2.91104 0.22799 2.85673 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 1.05307 2.38412 0.79373 2.23672 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.38560 2.91060 0.22812 2.85610 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38543 2.91043 0.22817 2.85585 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.46864 0.29669 3.03515 2.08783 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.32144 2.33575 2.82483 0.29328 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.34713 2.38595 0.61069 2.25344 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.64427 1.66936 2.35444 0.43753 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.32144 2.33575 2.82483 0.29328 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.32144 2.33575 2.82483 0.29328 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.37130 3.19920 0.21890 2.77351 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.46864 0.29669 3.03516 2.08783 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.49728 2.53424 1.50603 2.40015 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.48864 0.49207 2.19994 1.63573 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.32144 2.33575 2.82483 0.29328 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.32144 2.33575 2.82483 0.29328 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.06936 0.26733 2.74043 2.09079 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.06985 0.26727 2.74063 2.09088 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.45659 1.50955 2.18935 0.54253 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.07119 0.26710 2.74117 2.09115 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.58936 1.83616 2.22895 0.41876 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.15252 2.78574 0.28637 2.64308 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.07453 0.26668 2.74251 2.09179 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.49761 2.53324 1.50603 2.39877 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.07819 0.26623 2.74398 2.09250 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.59410 1.83644 2.23044 0.41791 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.59580 1.83655 2.23097 0.41760 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.37130 3.19920 0.21890 2.77350 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.49975 2.52685 1.50609 2.39001 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.49801 2.53205 1.50604 2.39714 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.15217 2.78533 0.28651 2.64254 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.07309 0.26687 2.74193 2.09151 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.59064 1.83623 2.22935 0.41853 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.15337 2.78674 0.28603 2.64439 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.49747 2.53367 1.50603 2.39936 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.15468 2.78830 0.28551 2.64643 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.49843 0.84065 1.88348 1.64491 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.46864 0.29669 3.03515 2.08783 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.32144 2.33575 2.82483 0.29328 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.37130 3.19920 0.21890 2.77350 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.21866 2.92615 2.68150 2.59903 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //