INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4005 ACC RF03755 DESC mir-4005 microRNA precursor family STATES 166 NODES 37 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 22:30:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03755/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.917969 CKSUM 4015190170 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 86.80 NC 48.30 EFP7GF -5.3548 0.73096 ECMLC 0.67788 -4.87320 3.61607 1600000 378795 0.003168 ECMGC 0.43234 -16.44938 -1.89803 1600000 215910 0.001853 ECMLI 0.63504 -4.11013 4.44795 1600000 275072 0.004362 ECMGI 0.46777 -11.83993 0.58531 1600000 133738 0.002991 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 89 -6.943 -7.150 -0.053 -5.564 IL 1 1 2 1 4 1 5 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 5 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 6 69 89 -8.351 -0.019 -6.668 -1.478 -1.476 -2.211 1.616 D 4 2 3 5 3 0 0 68 88 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 4 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 54 - U - - MR 6 5 3 8 5 1 5 68 88 -7.090 -0.039 -6.905 -7.117 -8.009 -1.478 -1.476 -2.211 1.616 D 7 5 3 8 5 0 0 67 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 53 g c - - MP 9 8 3 13 6 2 6 67 87 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.694 -2.526 -3.747 0.990 -4.362 -4.515 0.100 -4.041 -3.661 2.963 -4.102 1.650 -0.183 -3.852 -1.855 -2.624 ML 10 8 3 13 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 52 A U - - MP 15 14 6 19 6 2 6 65 85 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.788 -2.821 -3.807 3.330 -4.144 -5.206 0.156 -3.850 -3.699 1.082 -4.247 -0.297 -0.262 -4.394 -1.785 -2.641 ML 16 14 6 19 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 51 G C - - MP 21 20 6 25 6 2 6 63 83 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 22 20 6 25 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 50 U G - - MP 27 26 6 31 6 2 5 61 81 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.084 -4.004 -3.788 -0.340 -2.547 -4.214 1.739 -3.320 -3.828 -0.145 -4.121 -2.006 0.891 -4.170 3.001 -2.700 ML 28 26 6 31 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 49 U A - - MP 33 32 6 37 6 2 5 59 79 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 34 32 6 37 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 48 G C - - MP 39 38 6 43 6 2 5 57 77 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 40 38 6 43 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 47 G C - - MP 45 44 6 49 6 2 4 55 75 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 46 44 6 49 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 46 U A - - MP 51 50 6 55 6 2 4 53 73 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 52 50 6 55 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 45 G U - - MP 57 56 6 61 6 2 4 51 71 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.612 -2.384 -3.778 1.136 -4.491 -5.215 -0.097 -3.802 -3.441 1.363 -3.962 3.079 -0.456 -4.425 -2.039 -2.480 ML 58 56 6 61 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 44 C G - - MP 63 62 6 67 6 2 3 49 69 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 64 62 6 67 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 43 U A - - MP 69 68 6 73 4 2 2 47 67 -6.943 -7.150 -0.053 -5.564 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 70 68 6 73 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 75 74 6 77 3 1 1 45 64 -8.351 -0.019 -6.668 1.717 -2.363 -1.996 -1.904 D 76 74 6 77 3 0 0 44 63 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 42 - A - - MR 78 77 3 80 5 1 1 44 63 -7.090 -0.039 -6.905 -7.117 -8.009 1.717 -2.363 -1.996 -1.904 D 79 77 3 80 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 41 u a - - MP 81 80 3 85 6 2 2 43 62 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -3.434 -3.418 -3.365 0.196 -2.439 -3.975 1.834 -3.115 -3.390 0.415 -3.804 -1.503 2.311 -3.608 1.825 -2.311 ML 82 80 3 85 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 40 C G - - MP 87 86 6 91 4 2 2 41 60 -6.943 -7.150 -0.053 -5.564 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 88 86 6 91 4 1 1 41 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 93 92 6 95 3 1 1 38 57 -7.960 -0.021 -6.614 1.717 -2.363 -1.996 -1.904 D 94 92 6 95 3 0 0 37 56 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - U - - - ML 96 95 3 98 3 1 1 37 56 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 97 95 3 98 3 0 0 36 55 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - a - - - ML 99 98 3 101 3 1 1 36 55 -8.351 -0.019 -6.668 0.706 -1.392 0.501 -0.804 D 100 98 3 101 3 0 0 35 54 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 39 - G - - MR 102 101 3 104 5 1 1 35 54 -7.090 -0.039 -6.905 -7.117 -8.009 -1.571 -2.790 1.722 -2.177 D 103 101 3 104 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 38 C G - - MP 105 104 3 109 6 2 2 34 53 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.547 -4.453 -4.237 -0.685 -2.956 -4.649 3.550 -3.765 -4.286 -0.444 -4.548 -2.400 0.559 -4.616 -0.662 -3.126 ML 106 104 3 109 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 37 U A - - MP 111 110 6 115 6 2 2 32 51 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 112 110 6 115 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 36 U A - - MP 117 116 6 121 6 2 2 30 49 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 118 116 6 121 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 35 G C - - MP 123 122 6 127 6 2 2 28 47 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 124 122 6 127 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 34 U A - - MP 129 128 6 133 6 2 2 26 45 -9.106 -9.045 -0.021 -7.821 -8.101 -8.496 -4.187 -4.012 -4.026 -0.307 -2.968 -4.590 1.360 -3.664 -4.030 -0.053 -4.404 -1.911 3.327 -4.339 -0.644 -2.855 ML 130 128 6 133 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 33 G C - - MP 135 134 6 139 4 2 2 24 43 -6.943 -7.150 -0.053 -5.564 -4.737 -3.092 -4.836 0.203 -5.226 -4.692 -0.592 -5.078 -4.325 3.637 -4.662 -0.790 -0.977 -4.465 -2.629 -3.713 ML 136 134 6 139 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - U - - - ML 141 140 6 143 3 1 1 21 40 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 142 140 6 143 3 0 0 20 39 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - A - - - ML 144 143 3 146 3 1 1 20 39 -7.960 -0.021 -6.614 1.717 -2.363 -1.996 -1.904 D 145 143 3 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - U - - - ML 147 146 3 149 3 1 1 19 37 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - U - - - ML 150 149 3 152 3 1 1 18 36 -7.960 -0.021 -6.614 -1.478 -1.476 -2.211 1.616 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - A - - - ML 153 152 3 155 3 1 1 16 35 -7.960 -0.021 -6.614 1.717 -2.363 -1.996 -1.904 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - C - - - ML 156 155 3 158 3 1 1 15 33 -7.960 -0.021 -6.614 -1.731 1.621 -2.554 -1.147 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - G - - - ML 159 158 3 161 3 1 1 13 31 -7.960 -0.021 -6.614 -1.571 -2.790 1.722 -2.177 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - U - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -1.478 -1.476 -2.211 1.616 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4005 ACC RF03755 DESC mir-4005 microRNA precursor family LENG 54 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 22:30:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03755/CM NSEQ 2 EFFN 1.738281 CKSUM 4015190170 STATS LOCAL MSV -7.7853 0.73096 STATS LOCAL VITERBI -8.7182 0.73096 STATS LOCAL FORWARD -3.1161 0.73096 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46020 1.51702 1.31230 1.27566 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.32144 2.33575 2.82483 0.29328 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.89253 2.48637 0.39806 2.35939 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.49497 2.41439 1.57709 2.36007 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.38787 2.91288 0.22746 2.85939 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.65493 1.43345 2.40391 0.50941 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.64567 1.66936 2.35496 0.43730 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.38688 2.91188 0.22775 2.85796 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.38652 2.91152 0.22785 2.85743 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.64417 1.66936 2.35440 0.43755 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.78923 2.57678 0.39712 2.46934 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.88420 0.33086 2.61843 1.87810 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.64320 1.66935 2.35404 0.43771 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.21866 2.92615 2.68150 2.59903 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.33378 1.37974 2.08526 0.64027 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.88521 0.33071 2.61885 1.87825 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.21866 2.92615 2.68150 2.59903 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.32144 2.33575 2.82483 0.29328 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.90719 2.30968 1.05691 1.90033 18 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.88330 0.33100 2.61805 1.87795 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.64515 1.66936 2.35476 0.43739 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.64580 1.66936 2.35500 0.43728 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.38730 2.91230 0.22763 2.85856 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.64533 1.66936 2.35483 0.43736 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38670 2.91170 0.22780 2.85769 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.32144 2.33575 2.82483 0.29328 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.21866 2.92615 2.68150 2.59903 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.32144 2.33575 2.82483 0.29328 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.32144 2.33575 2.82483 0.29328 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.21866 2.92615 2.68150 2.59903 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.46864 0.29669 3.03516 2.08783 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.37130 3.19920 0.21890 2.77350 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.32144 2.33575 2.82483 0.29328 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.07341 0.26683 2.74206 2.09158 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.49772 2.53292 1.50604 2.39833 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.07650 0.26644 2.74330 2.09218 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.49742 2.53381 1.50603 2.39955 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.49722 2.53442 1.50602 2.40039 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.15584 2.78968 0.28505 2.64823 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.37130 3.19920 0.21890 2.77351 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.15466 2.78827 0.28552 2.64639 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.11898 2.25063 0.80480 2.11299 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.21866 2.92615 2.68149 2.59903 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.49813 2.53169 1.50605 2.39664 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.15162 2.78467 0.28673 2.64169 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.68657 1.64871 2.38204 0.43506 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.49797 2.53217 1.50604 2.39730 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.07263 0.26692 2.74175 2.09143 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.07385 0.26677 2.74224 2.09166 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.49768 2.53304 1.50604 2.39850 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.93415 2.57642 0.37230 2.40507 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.07939 0.26608 2.74446 2.09274 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.59492 1.83649 2.23069 0.41776 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.59503 0.69944 2.30161 1.11353 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.32144 2.33575 2.82483 0.29328 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //