INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1986 ACC RF03753 DESC mir-1986 microRNA precursor family STATES 184 NODES 40 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 06:09:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/cb/dcceadfae145d2584cc2e48a1dd06f/RF03753/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.746094 CKSUM 47830185 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.60 NC 46.00 EFP7GF -4.8134 0.72979 ECMLC 0.61385 -6.43237 3.54222 1600000 547429 0.002192 ECMGC 0.41469 -18.82607 -3.30535 1600000 249625 0.001602 ECMLI 0.58090 -5.57900 4.34852 1600000 383440 0.003130 ECMGI 0.44876 -13.50666 -0.37009 1600000 145302 0.002753 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -6.871 -7.078 -0.056 -5.492 IL 1 1 2 1 4 1 7 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 7 75 95 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 4 2 3 5 3 0 1 74 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 6 74 94 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 7 5 3 8 3 0 1 73 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 5 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 5 73 93 -8.288 -0.020 -6.606 -1.428 -2.623 1.686 -2.009 D 10 8 3 11 3 0 0 72 91 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 4 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - U - - MR 12 11 3 14 3 1 5 72 92 -8.288 -0.020 -6.606 -1.355 -1.374 -2.081 1.579 D 13 11 3 14 3 0 0 71 90 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 3 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - A - - MR 15 14 3 17 5 1 4 71 91 -7.031 -0.041 -6.847 -7.059 -7.950 1.686 -2.228 -1.874 -1.756 D 16 14 3 17 5 0 0 70 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 2 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 58 C G - - MP 18 17 3 22 6 2 6 70 90 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 19 17 3 22 6 1 1 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 2 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 2 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 57 g u - - MP 24 23 6 28 6 2 5 68 88 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.527 -2.331 -3.686 1.187 -4.329 -5.055 0.048 -3.722 -3.373 1.478 -3.889 2.983 -0.313 -4.281 -1.894 -2.406 ML 25 23 6 28 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 56 C G - - MP 30 29 6 34 6 2 5 66 86 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 31 29 6 34 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 55 G C - - MP 36 35 6 40 6 2 5 64 84 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 37 35 6 40 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 54 G C - - MP 42 41 6 46 6 2 4 62 82 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 43 41 6 46 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 53 a u - - MP 48 47 6 52 6 2 4 60 80 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.260 -2.305 -3.375 2.376 -3.901 -4.600 0.330 -3.557 -3.247 1.685 -3.780 1.959 0.065 -3.760 -1.561 -2.224 ML 49 47 6 52 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 52 U A - - MP 54 53 6 58 6 2 3 58 78 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.043 -3.864 -3.898 -0.170 -2.872 -4.475 1.453 -3.557 -3.904 0.107 -4.285 -1.767 3.253 -4.200 -0.551 -2.742 ML 55 53 6 58 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 51 C G - - MP 60 59 6 64 4 2 2 56 75 -6.871 -7.078 -0.056 -5.492 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 61 59 6 64 4 1 1 57 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - G - - - ML 66 65 6 68 3 1 1 54 73 -8.288 -0.020 -6.606 -1.428 -2.623 1.686 -2.009 D 67 65 6 68 3 0 0 52 72 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - A - - MR 69 68 3 71 5 1 1 53 72 -7.031 -0.041 -6.847 -7.059 -7.950 1.686 -2.228 -1.874 -1.756 D 70 68 3 71 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 49 U A - - MP 72 71 3 76 6 2 2 52 71 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.043 -3.864 -3.898 -0.170 -2.872 -4.475 1.453 -3.557 -3.904 0.107 -4.285 -1.767 3.253 -4.200 -0.551 -2.742 ML 73 71 3 76 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 48 G C - - MP 78 77 6 82 6 2 2 50 69 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 79 77 6 82 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 47 G C - - MP 84 83 6 88 6 2 2 48 67 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 85 83 6 88 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 46 G C - - MP 90 89 6 94 6 2 2 46 65 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 91 89 6 94 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 45 g u - - MP 96 95 6 100 6 2 2 44 63 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.527 -2.331 -3.686 1.187 -4.329 -5.055 0.048 -3.722 -3.373 1.478 -3.889 2.983 -0.313 -4.281 -1.894 -2.406 ML 97 95 6 100 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 44 g u - - MP 102 101 6 106 4 2 2 42 61 -6.871 -7.078 -0.056 -5.492 -3.527 -2.331 -3.686 1.187 -4.329 -5.055 0.048 -3.722 -3.373 1.478 -3.889 2.983 -0.313 -4.281 -1.894 -2.406 ML 103 101 6 106 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - - - ML 108 107 6 110 3 1 1 39 58 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 109 107 6 110 3 0 0 38 57 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - a - - - ML 111 110 3 113 3 1 1 38 57 -8.288 -0.020 -6.606 0.692 -1.335 0.476 -0.744 D 112 110 3 113 3 0 0 37 55 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 43 - U - - MR 114 113 3 116 3 1 1 37 56 -8.288 -0.020 -6.606 -1.355 -1.374 -2.081 1.579 D 115 113 3 116 3 0 0 35 54 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 42 - A - - MR 117 116 3 119 5 1 1 36 55 -7.031 -0.041 -6.847 -7.059 -7.950 1.686 -2.228 -1.874 -1.756 D 118 116 3 119 5 0 0 35 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 41 C G - - MP 120 119 3 124 6 2 2 35 54 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 121 119 3 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 40 C G - - MP 126 125 6 130 6 2 2 33 52 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 39 A U - - MP 132 131 6 136 6 2 2 31 50 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.676 -2.738 -3.703 3.251 -3.984 -5.036 0.308 -3.752 -3.600 1.203 -4.141 -0.233 -0.110 -4.243 -1.633 -2.544 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 38 C G - - MP 138 137 6 142 6 2 2 29 48 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 139 137 6 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 37 c g - - MP 144 143 6 148 6 2 2 27 46 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 0.872 -2.310 -2.389 0.844 -2.104 -3.174 1.647 -2.555 -2.436 0.971 -2.957 -0.688 1.247 -2.551 1.354 -1.542 ML 145 143 6 148 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 36 g c - - MP 150 149 6 154 6 2 2 25 44 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.189 -2.546 -3.283 0.718 -3.281 0.530 0.723 -3.563 -3.274 2.956 -3.699 -0.530 0.373 -3.247 -1.104 -2.367 ML 151 149 6 154 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 35 U A - - MP 156 155 6 160 6 2 2 23 42 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.043 -3.864 -3.898 -0.170 -2.872 -4.475 1.453 -3.557 -3.904 0.107 -4.285 -1.767 3.253 -4.200 -0.551 -2.742 ML 157 155 6 160 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 34 c g - - MP 162 161 6 166 4 2 2 21 40 -6.871 -7.078 -0.056 -5.492 -2.665 -2.627 -2.741 0.664 -2.278 -3.458 2.374 -2.795 -2.788 1.001 -3.267 -0.878 1.203 1.032 -0.152 -1.828 ML 163 161 6 166 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - u - - - ML 168 167 6 170 3 1 1 18 36 -7.893 -0.022 -6.547 0.542 -0.813 -1.016 0.566 D 169 167 6 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 171 170 3 173 3 1 1 16 35 -7.893 -0.022 -6.547 0.608 0.232 -1.065 -0.280 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - U - - - ML 174 173 3 176 3 1 1 15 33 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 177 176 3 179 3 1 1 13 32 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - U - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -1.355 -1.374 -2.081 1.579 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1986 ACC RF03753 DESC mir-1986 microRNA precursor family LENG 60 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 06:09:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/cb/dcceadfae145d2584cc2e48a1dd06f/RF03753/CM NSEQ 2 EFFN 1.714844 CKSUM 47830185 STATS LOCAL MSV -7.9509 0.72979 STATS LOCAL VITERBI -9.3752 0.72979 STATS LOCAL FORWARD -2.9452 0.72979 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64880 1.39735 1.14315 1.42025 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35732 3.18288 0.22266 2.75711 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.35732 3.18288 0.22266 2.75711 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.35732 3.18288 0.22266 2.75711 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.87047 0.33543 2.60351 1.86895 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.78471 2.56403 0.40119 2.45760 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.87475 0.33477 2.60530 1.86962 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.37910 2.89819 0.23055 2.84482 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.37885 2.89795 0.23062 2.84445 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.05731 2.37349 0.79488 2.22727 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.63208 1.66079 2.34034 0.44350 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.87249 0.33512 2.60436 1.86927 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.35732 3.18288 0.22266 2.75711 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.62898 1.66078 2.33920 0.44402 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.37812 2.89722 0.23083 2.84341 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.37882 2.89792 0.23063 2.84442 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.37889 2.89799 0.23061 2.84451 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.78474 2.56408 0.40117 2.45766 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.78463 2.56391 0.40125 2.45743 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.45308 0.30161 3.01894 2.07550 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.90857 2.30421 1.05931 1.89468 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.86894 0.33567 2.60287 1.86872 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.87289 0.33505 2.60452 1.86933 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.50257 2.40025 1.56731 2.34627 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.87431 0.33483 2.60511 1.86955 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.38339 1.47795 1.69848 1.08409 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.03994 1.58522 0.62896 2.02561 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.63197 1.66079 2.34030 0.44352 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.02563 1.05623 1.73054 1.06962 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.01198 1.94574 2.08620 0.99570 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.96686 1.22848 2.11866 1.57603 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.30963 2.32606 2.81233 0.29712 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.30963 2.32606 2.81233 0.29712 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.30963 2.32606 2.81233 0.29712 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.72458 1.32045 0.93580 1.81729 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.50484 2.51784 1.49745 2.38523 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.25921 0.53847 1.92367 1.79663 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.24524 1.86732 0.98817 1.68560 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.14428 2.77226 0.28984 2.63186 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.57945 1.82520 2.21628 0.42467 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.14557 2.77377 0.28932 2.63385 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.14644 2.77480 0.28897 2.63520 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.22189 2.91308 2.66974 2.58474 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.30963 2.32606 2.81233 0.29712 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.67582 1.63819 2.36956 0.44115 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.67663 1.63819 2.36985 0.44102 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.06275 0.26979 2.72888 2.08416 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.06469 0.26955 2.72966 2.08454 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.06708 0.26924 2.73061 2.08500 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.50396 2.52045 1.49742 2.38883 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.22189 2.91308 2.66974 2.58474 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.14289 2.77063 0.29040 2.62972 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.50483 2.51789 1.49745 2.38530 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.44812 1.50261 2.17902 0.54845 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.06149 0.26995 2.72838 2.08392 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.06315 0.26974 2.72904 2.08424 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.14499 2.77310 0.28955 2.63296 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.68070 1.63817 2.37134 0.44038 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.14665 2.77504 0.28889 2.63552 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.22189 2.91308 2.66974 2.58474 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.30963 2.32606 2.81233 0.29712 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //