INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1013 ACC RF03724 DESC mir-1013 microRNA precursor family STATES 187 NODES 40 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 22:28:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03724/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.496094 CKSUM 3872138870 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 70.50 NC 55.90 EFP7GF -6.3728 0.72500 ECMLC 0.61033 -5.70501 3.63441 1600000 358683 0.003346 ECMGC 0.43040 -15.82143 -2.25957 1600000 137100 0.002918 ECMLI 0.60353 -4.06196 4.79667 1600000 251833 0.004765 ECMGI 0.48594 -10.47956 0.69396 1600000 91226 0.004385 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 97 -6.691 -7.937 -0.091 -4.390 IL 1 1 2 1 4 1 10 78 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - G - - MR 3 2 3 5 3 1 13 77 97 -8.192 -0.021 -6.510 -1.207 -2.364 1.621 -1.749 D 4 2 3 5 3 0 5 75 95 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 11 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - A - - MR 6 5 3 8 5 1 13 76 96 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 7 5 3 8 5 0 5 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 G C - - MP 9 8 3 13 6 2 14 75 95 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 10 8 3 13 6 1 7 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 u g - - MP 15 14 6 19 6 2 13 73 93 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.743 -3.648 -3.524 -0.019 -2.397 -4.008 1.879 -3.134 -3.561 0.237 -3.891 -1.660 1.083 -3.860 2.746 -2.451 ML 16 14 6 19 6 1 6 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 G C - - MP 21 20 6 25 6 2 13 71 91 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 22 20 6 25 6 1 6 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 A U - - MP 27 26 6 31 6 2 12 69 89 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 28 26 6 31 6 1 5 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 55 G C - - MP 33 32 6 37 6 2 10 67 87 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 34 32 6 37 6 1 5 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 54 U A - - MP 39 38 6 43 6 2 9 65 85 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 40 38 6 43 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 53 U A - - MP 45 44 6 49 6 2 7 63 83 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 46 44 6 49 6 1 4 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 52 u g - - MP 51 50 6 55 4 2 6 61 81 -6.758 -6.965 -0.061 -5.380 -3.743 -3.648 -3.524 -0.019 -2.397 -4.008 1.879 -3.134 -3.561 0.237 -3.891 -1.660 1.083 -3.860 2.746 -2.451 ML 52 50 6 55 4 1 3 61 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 61 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 60 80 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 4 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - C - - - ML 57 56 6 59 3 1 4 59 78 -8.192 -0.021 -6.510 -1.326 1.490 -2.132 -0.826 D 58 56 6 59 3 0 0 57 77 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 3 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - C - - MR 60 59 3 62 5 1 4 58 77 -6.942 -0.043 -6.757 -6.969 -7.861 -1.326 1.490 -2.132 -0.826 D 61 59 3 62 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 50 G C - - MP 63 62 3 67 6 2 5 57 76 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 64 62 3 67 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 49 u g - - MP 69 68 6 73 6 2 4 55 74 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.743 -3.648 -3.524 -0.019 -2.397 -4.008 1.879 -3.134 -3.561 0.237 -3.891 -1.660 1.083 -3.860 2.746 -2.451 ML 70 68 6 73 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 48 A U - - MP 75 74 6 79 4 2 2 53 72 -6.758 -6.965 -0.061 -5.380 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 76 74 6 79 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - C - - - ML 81 80 6 83 3 1 1 50 70 -8.192 -0.021 -6.510 -1.326 1.490 -2.132 -0.826 D 82 80 6 83 3 0 0 49 68 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 47 - A - - MR 84 83 3 86 5 1 1 49 69 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 85 83 3 86 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 46 A U - - MP 87 86 3 91 6 2 2 48 68 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 88 86 3 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 45 C G - - MP 93 92 6 97 6 2 2 46 66 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 44 U A - - MP 99 98 6 103 6 2 2 44 64 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 100 98 6 103 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 43 U A - - MP 105 104 6 109 4 2 2 42 62 -6.758 -6.965 -0.061 -5.380 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 106 104 6 109 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - A - - - ML 111 110 6 113 3 1 1 40 59 -8.192 -0.021 -6.510 1.631 -2.022 -1.689 -1.532 D 112 110 6 113 3 0 0 38 58 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 42 - A - - MR 114 113 3 116 3 1 1 39 58 -8.192 -0.021 -6.510 1.631 -2.022 -1.689 -1.532 D 115 113 3 116 3 0 0 37 56 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 39 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 41 - A - - MR 117 116 3 119 5 1 1 38 57 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 118 116 3 119 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 40 A U - - MP 120 119 3 124 6 2 2 37 56 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 121 119 3 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 39 U A - - MP 126 125 6 130 6 2 2 35 54 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 38 U A - - MP 132 131 6 136 6 2 2 33 52 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 133 131 6 136 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 37 A U - - MP 138 137 6 142 6 2 2 31 50 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 139 137 6 142 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 36 A U - - MP 144 143 6 148 6 2 2 29 48 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 145 143 6 148 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 35 u g - - MP 150 149 6 154 4 2 2 27 46 -6.758 -6.965 -0.061 -5.380 -3.743 -3.648 -3.524 -0.019 -2.397 -4.008 1.879 -3.134 -3.561 0.237 -3.891 -1.660 1.083 -3.860 2.746 -2.451 ML 151 149 6 154 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - A - - - ML 156 155 6 158 5 1 1 24 43 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 157 155 6 158 5 0 0 23 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 158 158 3 158 5 1 1 24 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 34 G C - - MP 159 158 3 163 6 2 2 23 42 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 160 158 3 163 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 33 G C - - MP 165 164 6 169 4 2 2 21 40 -6.758 -6.965 -0.061 -5.380 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 166 164 6 169 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 171 170 6 173 3 1 1 18 36 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 172 170 6 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - U - - - ML 174 173 3 176 3 1 1 16 35 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - C - - - ML 177 176 3 179 3 1 1 15 33 -7.789 -0.023 -6.443 -1.326 1.490 -2.132 -0.826 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - G - - - ML 180 179 3 182 3 1 1 13 32 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - G - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.207 -2.364 1.621 -1.749 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1013 ACC RF03724 DESC mir-1013 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 22:28:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03724/CM NSEQ 2 EFFN 1.832031 CKSUM 3872138870 STATS LOCAL MSV -8.5033 0.72500 STATS LOCAL VITERBI -8.8450 0.72500 STATS LOCAL FORWARD -3.2567 0.72500 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31534 1.49501 1.34444 1.39963 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.41249 2.96018 0.21856 2.90182 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.69658 1.45575 2.45571 0.48852 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.41781 2.96568 0.21708 2.90971 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.46667 2.46908 1.61631 2.41219 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.41841 2.96631 0.21691 2.91060 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.69349 1.70409 2.41098 0.41447 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.69322 1.70409 2.41088 0.41451 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.69899 1.45563 2.45669 0.48816 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53031 0.27807 3.09922 2.13678 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.41667 2.96450 0.21740 2.90801 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.70012 1.45558 2.45716 0.48799 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.46648 2.46955 1.61635 2.41294 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53031 0.27807 3.09922 2.13678 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.46687 2.46855 1.61627 2.41137 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.93571 0.31384 2.67626 1.91425 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.69529 1.70412 2.41167 0.41419 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.69522 1.70412 2.41164 0.41420 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.20644 2.97775 2.72790 2.65552 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.46697 2.46830 1.61625 2.41097 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.69411 1.70410 2.41122 0.41437 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.69501 1.70411 2.41156 0.41423 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.46648 2.46957 1.61635 2.41296 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.46652 2.46946 1.61634 2.41279 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.70032 1.45557 2.45724 0.48796 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.20644 2.97775 2.72790 2.65552 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.41854 2.96644 0.21688 2.91079 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41904 2.96696 0.21674 2.91154 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20644 2.97775 2.72790 2.65552 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.36828 2.37422 2.87429 0.27864 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53031 0.27807 3.09922 2.13678 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.42633 3.26326 0.20478 2.83790 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.42633 3.26326 0.20478 2.83790 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.11288 0.25579 2.79275 2.12048 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 3.10218 0.25709 2.78833 2.11838 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.96283 2.63024 0.35505 2.44944 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.64347 1.88103 2.28430 0.39362 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.64445 1.88110 2.28462 0.39346 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.47081 2.59158 1.54088 2.44862 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.47061 2.59224 1.54089 2.44952 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.64910 1.88143 2.28613 0.39267 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.20644 2.97775 2.72790 2.65552 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.20644 2.97775 2.72790 2.65552 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.47096 2.59111 1.54087 2.44799 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.47079 2.59165 1.54088 2.44873 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.19136 2.84603 0.27084 2.69673 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.64936 1.88145 2.28621 0.39262 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.20644 2.97775 2.72790 2.65552 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.64565 1.88119 2.28501 0.39325 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.96447 2.63234 0.35418 2.45208 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.13650 0.25299 2.80241 2.12506 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.53031 0.27807 3.09922 2.13678 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.96221 2.62945 0.35538 2.44844 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.47139 2.58971 1.54085 2.44613 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.47132 2.58994 1.54086 2.44643 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.12477 0.25437 2.79763 2.12280 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.64334 1.88102 2.28425 0.39365 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.12790 0.25400 2.79891 2.12340 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 1.96387 2.63156 0.35451 2.45110 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.13280 0.25342 2.80091 2.12435 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.20644 2.97775 2.72790 2.65552 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.42633 3.26326 0.20478 2.83790 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //