INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2253 ACC RF03706 DESC mir-2253 microRNA precursor family STATES 175 NODES 39 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 10:42:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03706/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.269531 CKSUM 3627029595 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.70 NC 46.60 EFP7GF -9.9855 0.71944 ECMLC 0.67989 -4.81036 3.62071 1600000 370389 0.003240 ECMGC 0.45628 -15.13116 -2.38242 1600000 134383 0.002977 ECMLI 0.62614 -4.41206 4.39520 1600000 297930 0.004028 ECMGI 0.50113 -10.68087 0.31129 1600000 98717 0.004052 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 72 92 -6.987 -8.232 -0.074 -4.686 IL 1 1 2 1 4 1 7 74 93 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 57 - A - - MR 3 2 3 5 3 1 10 72 92 -8.471 -0.017 -6.789 1.768 -2.623 -2.230 -2.191 D 4 2 3 5 3 0 3 71 90 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 8 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 56 - A - - MR 6 5 3 8 5 1 9 71 91 -7.202 -0.036 -7.018 -7.230 -8.121 1.768 -2.623 -2.230 -2.191 D 7 5 3 8 5 0 3 70 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 6 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 55 C G - - MP 9 8 3 13 6 2 10 70 90 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 10 8 3 13 6 1 5 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 4 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 1 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 6 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 54 G C - - MP 15 14 6 19 6 2 10 68 88 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.988 -3.212 -5.114 0.034 -5.578 -4.788 -0.882 -5.371 -4.485 3.692 -4.805 -0.922 -1.261 -4.628 -2.933 -3.987 ML 16 14 6 19 6 1 4 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 53 G C - - MP 21 20 6 25 6 2 10 66 86 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -3.845 -2.614 -3.890 0.907 -4.606 -4.642 -0.089 -4.201 -3.795 3.009 -4.229 1.742 -0.363 -3.985 -2.052 -2.756 ML 22 20 6 25 6 1 4 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 52 A U - - MP 27 26 6 31 6 2 9 64 84 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.020 -2.994 -4.020 3.461 -4.474 -5.561 -0.159 -4.046 -3.904 0.832 -4.463 -0.435 -0.575 -4.709 -2.099 -2.841 ML 28 26 6 31 6 1 4 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 51 g c - - MP 33 32 6 37 6 2 9 62 82 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -3.500 -2.939 -3.477 0.706 -2.986 -4.159 2.271 -3.450 -3.524 2.424 -3.953 -0.729 0.930 -3.589 -0.605 -2.378 ML 34 32 6 37 6 1 3 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 50 u a - - MP 39 38 6 43 6 2 9 60 80 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -3.598 -3.593 -3.507 0.040 -2.530 -4.095 1.753 -3.223 -3.531 0.236 -3.933 -1.676 2.378 -3.763 1.967 -2.443 ML 40 38 6 43 6 1 3 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 U A - - MP 45 44 6 49 6 2 8 58 78 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.487 -4.319 -4.292 -0.594 -3.173 -4.829 1.161 -3.888 -4.294 -0.380 -4.653 -2.208 3.453 -4.627 -0.842 -3.087 ML 46 44 6 49 6 1 3 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 4 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 u a - - MP 51 50 6 55 6 2 7 56 76 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -3.251 -3.307 -3.245 0.194 0.670 -3.906 1.733 -3.090 -3.273 0.316 -3.722 -1.506 2.703 -3.468 -0.225 -2.243 ML 52 50 6 55 6 1 3 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 C G - - MP 57 56 6 61 6 2 6 54 74 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 58 56 6 61 6 1 2 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 3 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 46 A U - - MP 63 62 6 67 4 2 4 52 71 -7.081 -7.288 -0.048 -5.702 -4.020 -2.994 -4.020 3.461 -4.474 -5.561 -0.159 -4.046 -3.904 0.832 -4.463 -0.435 -0.575 -4.709 -2.099 -2.841 ML 64 62 6 67 4 1 1 53 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 2 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 69 68 6 71 3 1 3 50 69 -8.471 -0.017 -6.789 1.768 -2.623 -2.230 -2.191 D 70 68 6 71 3 0 0 48 68 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - C - - MR 72 71 3 74 5 1 2 49 68 -7.202 -0.036 -7.018 -7.230 -8.121 -2.045 1.697 -2.876 -1.398 D 73 71 3 74 5 0 0 47 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 44 C G - - MP 75 74 3 79 6 2 3 48 67 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 76 74 3 79 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 43 A U - - MP 81 80 6 85 6 2 3 46 65 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.020 -2.994 -4.020 3.461 -4.474 -5.561 -0.159 -4.046 -3.904 0.832 -4.463 -0.435 -0.575 -4.709 -2.099 -2.841 ML 82 80 6 85 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 42 G C - - MP 87 86 6 91 4 2 2 44 63 -6.987 -8.232 -0.074 -4.686 -4.988 -3.212 -5.114 0.034 -5.578 -4.788 -0.882 -5.371 -4.485 3.692 -4.805 -0.922 -1.261 -4.628 -2.933 -3.987 ML 88 86 6 91 4 1 1 43 62 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 43 62 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 41 60 -12.737 -14.007 -2.036 -0.404 IL 91 91 5 91 4 1 1 43 62 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 43 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 41 - A - - MR 93 92 6 95 5 1 1 42 61 -7.202 -0.036 -7.018 -7.230 -8.121 1.768 -2.623 -2.230 -2.191 D 94 92 6 95 5 0 0 40 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 40 G C - - MP 96 95 3 100 6 2 2 41 60 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.988 -3.212 -5.114 0.034 -5.578 -4.788 -0.882 -5.371 -4.485 3.692 -4.805 -0.922 -1.261 -4.628 -2.933 -3.987 ML 97 95 3 100 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 39 C G - - MP 102 101 6 106 6 2 2 39 58 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 103 101 6 106 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 38 C G - - MP 108 107 6 112 6 2 2 37 56 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 109 107 6 112 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 37 A U - - MP 114 113 6 118 6 2 2 35 54 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.020 -2.994 -4.020 3.461 -4.474 -5.561 -0.159 -4.046 -3.904 0.832 -4.463 -0.435 -0.575 -4.709 -2.099 -2.841 ML 115 113 6 118 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 36 U A - - MP 120 119 6 124 4 2 2 33 52 -7.081 -7.288 -0.048 -5.702 -4.487 -4.319 -4.292 -0.594 -3.173 -4.829 1.161 -3.888 -4.294 -0.380 -4.653 -2.208 3.453 -4.627 -0.842 -3.087 ML 121 119 6 124 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 126 125 6 128 3 1 1 30 49 -8.471 -0.017 -6.789 1.768 -2.623 -2.230 -2.191 D 127 125 6 128 3 0 0 29 48 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 35 - C - - MR 129 128 3 131 5 1 1 29 48 -7.202 -0.036 -7.018 -7.230 -8.121 -0.991 1.059 -1.816 0.176 D 130 128 3 131 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 34 C G - - MP 132 131 3 136 6 2 2 28 47 -9.160 -9.099 -0.020 -7.875 -8.155 -8.550 -4.823 -4.753 -4.466 -0.962 -3.126 -4.842 3.627 -3.964 -4.526 -0.757 -4.756 -2.704 0.359 -4.874 -0.841 -3.356 ML 133 131 3 136 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 33 A U - - MP 138 137 6 142 4 2 2 26 45 -7.081 -7.288 -0.048 -5.702 -4.020 -2.994 -4.020 3.461 -4.474 -5.561 -0.159 -4.046 -3.904 0.832 -4.463 -0.435 -0.575 -4.709 -2.099 -2.841 ML 139 137 6 142 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - a - - - ML 144 143 6 146 3 1 1 23 42 -8.088 -0.019 -6.742 0.649 0.301 -1.196 -0.390 D 145 143 6 146 3 0 0 22 41 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - C - - - ML 147 146 3 149 3 1 1 22 41 -8.088 -0.019 -6.742 -2.045 1.697 -2.876 -1.398 D 148 146 3 149 3 0 0 21 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 150 149 3 152 3 1 1 21 40 -8.088 -0.019 -6.742 -1.718 -1.674 -2.463 1.679 D 151 149 3 152 3 0 0 20 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - c - - - ML 153 152 3 155 3 1 1 20 39 -8.088 -0.227 -2.816 0.081 0.358 -1.166 0.281 D 154 152 3 155 3 0 0 19 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - a - - - ML 156 155 3 158 3 1 1 19 37 -7.883 -0.022 -6.537 0.324 -0.806 -0.050 0.276 D 157 155 3 158 3 0 0 18 36 -7.398 -0.504 -1.790 IL 158 158 3 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - u - - - ML 159 158 3 161 3 1 1 17 36 -8.088 -0.019 -6.742 -0.434 -1.010 0.376 0.551 D 160 158 3 161 3 0 0 17 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - g - - - ML 162 161 3 164 3 1 1 16 35 -8.088 -0.019 -6.742 -0.417 0.243 0.391 -0.403 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - u - - - ML 165 164 3 167 3 1 1 15 33 -8.088 -0.019 -6.742 -0.434 -1.010 0.376 0.551 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - U - - - ML 168 167 3 170 3 1 1 13 31 -8.088 -0.019 -6.742 -0.575 -0.969 -0.428 1.053 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - A - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 1.087 -1.129 -1.208 -0.021 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2253 ACC RF03706 DESC mir-2253 microRNA precursor family LENG 57 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 10:42:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03706/CM NSEQ 4 EFFN 3.316406 CKSUM 3627029595 STATS LOCAL MSV -8.1861 0.71944 STATS LOCAL VITERBI -8.3271 0.71944 STATS LOCAL FORWARD -3.9169 0.71944 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33079 1.34740 1.41383 1.45841 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 0.00000 * 1 3.62771 0.15537 3.45606 2.45608 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 2 2.85798 3.65253 0.11755 3.59026 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 3 2.14843 3.01053 0.25347 2.84795 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 4 0.20554 3.30555 2.21791 3.21195 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 5 2.24165 1.07646 0.92162 1.86404 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 6 2.82769 1.64734 2.62503 0.39178 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 7 3.47483 2.29669 3.27959 0.18537 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 8 2.71678 1.13984 2.54286 0.62474 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 9 3.62839 0.15532 3.45642 2.45621 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 10 0.20587 3.30324 2.21735 3.20888 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 11 0.09905 3.65800 3.34325 3.40534 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 12 3.63886 0.15460 3.46199 2.45818 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 13 0.20524 3.30768 2.21842 3.21479 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 14 2.86018 3.65558 0.11719 3.59439 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 15 2.84627 3.63639 0.11947 3.56840 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 16 3.61939 0.15595 3.45161 2.45450 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 17 3.62573 0.15551 3.45500 2.45570 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 18 0.20585 3.30342 2.21740 3.20912 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 19 3.47346 2.29656 3.27888 0.18547 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 20 0.09905 3.65800 3.34325 3.40534 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 21 3.63951 0.15455 3.46234 2.45831 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 22 0.20522 3.30782 2.21845 3.21498 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 23 0.88697 1.10500 2.38633 1.80229 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 24 3.34961 0.12310 3.91509 2.80034 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 25 3.00973 2.90756 3.54027 0.14262 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 26 1.35036 1.06503 2.32172 1.21056 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.20333 4.05328 1.79202 1.46634 0.26236 1.09861 0.40547 27 1.15713 2.02058 1.39146 1.18968 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04168 3.89163 3.89163 1.46634 0.26236 0.18933 1.75744 28 1.82110 2.22908 1.05015 0.96590 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 29 1.83737 1.14426 1.01750 1.82756 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 30 1.82110 2.22908 1.05015 0.96590 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 31 1.95836 2.22346 1.69709 0.56658 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 32 0.56101 2.31922 2.38609 1.43116 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 33 3.44471 2.56287 3.11901 0.16629 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 34 2.74739 3.64038 0.13140 3.41751 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 35 2.32506 0.54795 2.92785 1.30719 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 36 0.21022 3.47108 2.13265 3.21915 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 37 3.42974 2.56042 3.11249 0.16742 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 38 2.73845 3.62647 0.13307 3.40177 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 39 2.74017 3.62914 0.13275 3.40478 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 40 3.78596 0.13986 3.50575 2.55345 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 41 0.09905 3.65800 3.34325 3.40534 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 42 3.78154 0.14013 3.50365 2.55264 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 43 3.44455 2.56285 3.11895 0.16630 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 44 2.74730 3.64025 0.13141 3.41736 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 45 3.34961 0.12310 3.91509 2.80034 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 46 3.42437 2.55953 3.11013 0.16783 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 47 2.73522 3.62146 0.13368 3.39610 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 48 0.47474 2.70827 1.47442 2.49632 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 49 0.21025 3.47079 2.13261 3.21883 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 50 0.96673 2.78971 0.72626 2.59664 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 51 2.10969 0.99018 0.99374 1.98758 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 52 3.43341 2.56103 3.11409 0.16714 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 53 3.07869 0.62890 2.82012 1.01832 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 54 3.78558 0.13989 3.50557 2.55338 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 55 2.74583 3.63795 0.13169 3.41476 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 56 0.09905 3.65800 3.34325 3.40534 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03535 4.05328 4.05328 1.46634 0.26236 1.09861 0.40547 57 0.09905 3.65800 3.34325 3.40534 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.01783 4.03576 * 1.46634 0.26236 0.00000 * //