INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-462 ACC RF03683 DESC mir-462 microRNA precursor family STATES 196 NODES 43 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 18:57:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03683/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.433594 CKSUM 1449954840 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 98.80 NC 75.60 EFP7GF -5.6960 0.72376 ECMLC 0.65131 -5.40128 3.40389 1600000 371372 0.003231 ECMGC 0.44409 -15.81889 -2.57299 1600000 143460 0.002788 ECMLI 0.63343 -3.94073 4.44471 1600000 243203 0.004934 ECMGI 0.48958 -10.78197 0.42696 1600000 96680 0.004137 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 99 -6.729 -6.936 -0.062 -5.350 IL 1 1 2 1 4 1 13 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 12 80 100 -7.762 -0.024 -6.416 -1.123 -1.185 -1.835 1.496 D 4 2 3 5 3 0 7 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 12 79 98 -8.167 -0.021 -6.484 1.615 -1.969 -1.641 -1.474 D 7 5 3 8 3 0 6 78 97 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 10 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 64 - C - - MR 9 8 3 11 3 1 11 78 97 -8.167 -0.021 -6.484 -1.264 1.465 -2.067 -0.777 D 10 8 3 11 3 0 4 76 96 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 63 - C - - MR 12 11 3 14 3 1 10 77 96 -8.167 -0.021 -6.484 -1.264 1.465 -2.067 -0.777 D 13 11 3 14 3 0 3 75 95 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 9 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 62 - C - - MR 15 14 3 17 3 1 10 76 95 -8.167 -0.021 -6.484 -1.264 1.465 -2.067 -0.777 D 16 14 3 17 3 0 2 74 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 8 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - G - - MR 18 17 3 20 5 1 9 75 94 -6.919 -0.044 -6.734 -6.946 -7.838 -1.149 -2.296 1.601 -1.681 D 19 17 3 20 5 0 2 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 6 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 60 A U - - MP 21 20 3 25 6 2 11 74 93 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 22 20 3 25 6 1 4 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 3 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 5 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 59 C G - - MP 27 26 6 31 6 2 10 72 91 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.151 -4.017 -3.905 -0.290 -2.718 -4.368 3.405 -3.487 -3.944 0.017 -4.245 -1.960 0.833 -4.244 -0.418 -2.798 ML 28 26 6 31 6 1 3 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 58 G C - - MP 33 32 6 37 6 2 9 70 89 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.351 -2.910 -4.422 0.453 -4.682 -4.535 -0.141 -4.631 -4.061 3.528 -4.428 -0.598 -0.539 -4.209 -2.159 -3.306 ML 34 32 6 37 6 1 3 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 57 G C - - MP 39 38 6 43 6 2 7 68 87 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.351 -2.910 -4.422 0.453 -4.682 -4.535 -0.141 -4.631 -4.061 3.528 -4.428 -0.598 -0.539 -4.209 -2.159 -3.306 ML 40 38 6 43 6 1 3 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 56 A U - - MP 45 44 6 49 6 2 6 66 85 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 46 44 6 49 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 55 A U - - MP 51 50 6 55 4 2 4 64 83 -6.729 -6.936 -0.062 -5.350 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 52 50 6 55 4 1 1 64 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 64 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 63 82 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 3 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - C - - - ML 57 56 6 59 3 1 3 61 81 -8.167 -0.021 -6.484 -1.264 1.465 -2.067 -0.777 D 58 56 6 59 3 0 0 60 80 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 54 - A - - MR 60 59 3 62 5 1 2 60 80 -6.919 -0.044 -6.734 -6.946 -7.838 1.615 -1.969 -1.641 -1.474 D 61 59 3 62 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 53 C G - - MP 63 62 3 67 6 2 4 59 79 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.151 -4.017 -3.905 -0.290 -2.718 -4.368 3.405 -3.487 -3.944 0.017 -4.245 -1.960 0.833 -4.244 -0.418 -2.798 ML 64 62 3 67 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 52 C G - - MP 69 68 6 73 6 2 3 57 77 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.151 -4.017 -3.905 -0.290 -2.718 -4.368 3.405 -3.487 -3.944 0.017 -4.245 -1.960 0.833 -4.244 -0.418 -2.798 ML 70 68 6 73 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 51 A U - - MP 75 74 6 79 6 2 3 55 75 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 76 74 6 79 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 50 u g - - MP 81 80 6 85 6 2 3 53 73 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.693 -3.595 -3.485 0.030 -2.375 -3.977 1.899 -3.107 -3.522 0.295 -3.856 -1.608 1.111 -3.814 2.700 -2.414 ML 82 80 6 85 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 49 A U - - MP 87 86 6 91 4 2 2 51 71 -6.729 -6.936 -0.062 -5.350 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 88 86 6 91 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - - - ML 93 92 6 95 3 1 1 49 68 -7.762 -0.024 -6.416 1.615 -1.969 -1.641 -1.474 D 94 92 6 95 3 0 0 47 67 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - - - ML 96 95 3 98 3 1 1 48 67 -8.167 -0.021 -6.484 -1.123 -1.185 -1.835 1.496 D 97 95 3 98 3 0 0 46 66 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 48 - C - - MR 99 98 3 101 5 1 1 47 66 -6.919 -0.044 -6.734 -6.946 -7.838 -1.264 1.465 -2.067 -0.777 D 100 98 3 101 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 47 g u - - MP 102 101 3 106 6 2 2 46 65 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.370 -2.243 -3.513 1.272 -4.026 -4.764 0.317 -3.574 -3.250 1.689 -3.759 2.765 -0.045 -4.015 -1.622 -2.272 ML 103 101 3 106 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 46 C G - - MP 108 107 6 112 6 2 2 44 63 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.151 -4.017 -3.905 -0.290 -2.718 -4.368 3.405 -3.487 -3.944 0.017 -4.245 -1.960 0.833 -4.244 -0.418 -2.798 ML 109 107 6 112 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 45 A U - - MP 114 113 6 118 6 2 2 42 61 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.479 -2.595 -3.517 3.080 -3.702 -4.742 0.579 -3.576 -3.425 1.419 -3.956 -0.127 0.159 -3.980 -1.364 -2.372 ML 115 113 6 118 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 44 G C - - MP 120 119 6 124 6 2 2 40 59 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.351 -2.910 -4.422 0.453 -4.682 -4.535 -0.141 -4.631 -4.061 3.528 -4.428 -0.598 -0.539 -4.209 -2.159 -3.306 ML 121 119 6 124 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 43 C G - - MP 126 125 6 130 6 2 2 38 57 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.151 -4.017 -3.905 -0.290 -2.718 -4.368 3.405 -3.487 -3.944 0.017 -4.245 -1.960 0.833 -4.244 -0.418 -2.798 ML 127 125 6 130 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 42 U A - - MP 132 131 6 136 6 2 2 36 55 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.793 -3.601 -3.673 0.072 -2.706 -4.272 1.612 -3.371 -3.683 0.396 -4.075 -1.512 3.097 -3.958 -0.392 -2.543 ML 133 131 6 136 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 41 G C - - MP 138 137 6 142 6 2 2 34 53 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -4.351 -2.910 -4.422 0.453 -4.682 -4.535 -0.141 -4.631 -4.061 3.528 -4.428 -0.598 -0.539 -4.209 -2.159 -3.306 ML 139 137 6 142 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 40 U A - - MP 144 143 6 148 6 2 2 32 51 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.793 -3.601 -3.673 0.072 -2.706 -4.272 1.612 -3.371 -3.683 0.396 -4.075 -1.512 3.097 -3.958 -0.392 -2.543 ML 145 143 6 148 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 39 u g - - MP 150 149 6 154 4 2 2 30 49 -6.729 -6.936 -0.062 -5.350 -3.693 -3.595 -3.485 0.030 -2.375 -3.977 1.899 -3.107 -3.522 0.295 -3.856 -1.608 1.111 -3.814 2.700 -2.414 ML 151 149 6 154 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - U - - - ML 156 155 6 158 3 1 1 27 46 -7.762 -0.024 -6.416 -1.123 -1.185 -1.835 1.496 D 157 155 6 158 3 0 0 26 45 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - G - - - ML 159 158 3 161 3 1 1 26 45 -8.167 -0.021 -6.484 -1.149 -2.296 1.601 -1.681 D 160 158 3 161 3 0 0 25 43 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - U - - MR 162 161 3 164 5 1 1 25 44 -6.919 -0.044 -6.734 -6.946 -7.838 -1.123 -1.185 -1.835 1.496 D 163 161 3 164 5 0 0 24 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 164 164 3 164 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 37 g u - - MP 165 164 3 169 6 2 2 24 43 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.370 -2.243 -3.513 1.272 -4.026 -4.764 0.317 -3.574 -3.250 1.689 -3.759 2.765 -0.045 -4.015 -1.622 -2.272 ML 166 164 3 169 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 3 169 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 36 U A - - MP 171 170 6 175 6 2 2 22 41 -9.028 -8.967 -0.022 -7.744 -8.023 -8.418 -3.793 -3.601 -3.673 0.072 -2.706 -4.272 1.612 -3.371 -3.683 0.396 -4.075 -1.512 3.097 -3.958 -0.392 -2.543 ML 172 170 6 175 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 35 u g - - MP 177 176 6 181 4 2 2 20 39 -6.729 -6.936 -0.062 -5.350 -3.693 -3.595 -3.485 0.030 -2.375 -3.977 1.899 -3.107 -3.522 0.295 -3.856 -1.608 1.111 -3.814 2.700 -2.414 ML 178 176 6 181 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - G - - - ML 183 182 6 185 3 1 1 16 35 -7.762 -0.024 -6.416 -1.149 -2.296 1.601 -1.681 D 184 182 6 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - A - - - ML 186 185 3 188 3 1 1 15 33 -7.762 -0.024 -6.416 1.615 -1.969 -1.641 -1.474 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - U - - - ML 189 188 3 191 3 1 1 13 32 -7.762 -0.024 -6.416 -1.123 -1.185 -1.835 1.496 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.123 -1.185 -1.835 1.496 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-462 ACC RF03683 DESC mir-462 microRNA precursor family LENG 64 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 18:57:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03683/CM NSEQ 2 EFFN 1.800781 CKSUM 1449954840 STATS LOCAL MSV -8.1102 0.72376 STATS LOCAL VITERBI -9.1754 0.72376 STATS LOCAL FORWARD -3.4806 0.72376 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55894 1.41245 1.30449 1.29177 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35275 2.36145 2.85791 0.28340 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.21040 2.96067 2.71254 2.63681 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.47630 2.44977 1.60313 2.39313 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.91859 0.31939 2.65708 1.90219 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.40863 2.94904 0.22024 2.89421 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.40866 2.94907 0.22023 2.89425 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.47584 2.45094 1.60322 2.39497 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.47589 2.45080 1.60321 2.39475 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.50986 0.28409 3.07801 2.12054 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.91497 0.31992 2.65553 1.90161 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.91875 0.31936 2.65714 1.90221 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.47579 2.45105 1.60322 2.39515 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.68556 1.44816 2.43968 0.49491 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.47583 2.45095 1.60322 2.39499 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.21040 2.96067 2.71254 2.63681 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35275 2.36145 2.85791 0.28340 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.80190 2.61135 0.38622 2.50152 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.91927 0.31928 2.65737 1.90230 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.47576 2.45113 1.60323 2.39528 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.40881 2.94922 0.22019 2.89447 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.91966 0.31923 2.65754 1.90236 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.67781 1.69244 2.39241 0.42189 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.40790 2.94829 0.22044 2.89313 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.67694 1.69243 2.39209 0.42203 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.68364 1.44826 2.43891 0.49520 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.35275 2.36145 2.85791 0.28340 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.40814 3.24212 0.20933 2.81665 27 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.80183 2.61122 0.38627 2.50135 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.67781 1.69244 2.39242 0.42189 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.68568 1.44816 2.43973 0.49489 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.40814 3.24212 0.20933 2.81665 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.21040 2.96067 2.71254 2.63681 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.35275 2.36145 2.85791 0.28340 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.35275 2.36145 2.85791 0.28340 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.95412 2.61347 0.36021 2.43607 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.47930 2.57298 1.52919 2.43312 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.72745 1.67673 2.41973 0.41751 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.35275 2.36145 2.85791 0.28340 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.95245 2.61136 0.36111 2.43339 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.48007 2.57054 1.52917 2.42983 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.10689 0.25852 2.77891 2.11227 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.47991 2.57106 1.52918 2.43052 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.17722 2.82458 0.27636 2.67703 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.11126 0.25800 2.78068 2.11311 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.62815 1.86622 2.26669 0.40133 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.17919 2.82696 0.27560 2.68010 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.72756 1.67673 2.41977 0.41750 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.50986 0.28409 3.07801 2.12054 48 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.62586 1.86606 2.26596 0.40173 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.95365 2.61288 0.36047 2.43532 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.62800 1.86621 2.26664 0.40136 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.17909 2.82684 0.27564 2.67995 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.18007 2.82803 0.27526 2.68149 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.21040 2.96067 2.71254 2.63681 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.62506 1.86601 2.26570 0.40187 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.62583 1.86606 2.26595 0.40174 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.11097 0.25803 2.78057 2.11306 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.11309 0.25778 2.78142 2.11347 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.17906 2.82680 0.27565 2.67990 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.63126 1.86643 2.26769 0.40080 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.40814 3.24212 0.20933 2.81665 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.50986 0.28409 3.07801 2.12054 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.50986 0.28409 3.07801 2.12054 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.50986 0.28409 3.07801 2.12054 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //