INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR1887 ACC RF03655 DESC MIR1887 microRNA precursor family STATES 193 NODES 40 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 18:06:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03655/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.417969 CKSUM 2137849271 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 97.00 NC 55.90 EFP7GF -5.8524 0.72485 ECMLC 0.64799 -4.36010 4.28191 1600000 324486 0.003698 ECMGC 0.48016 -13.84869 -1.12312 1600000 180196 0.002220 ECMLI 0.65608 -2.56544 5.48157 1600000 235529 0.005095 ECMGI 0.53730 -8.42486 2.10063 1600000 114332 0.003499 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.721 -6.928 -0.062 -5.343 IL 1 1 2 1 4 1 9 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 9 79 98 -8.160 -0.021 -6.478 -1.111 -1.176 -1.822 1.491 D 4 2 3 5 3 0 3 78 97 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 7 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - A - - MR 6 5 3 8 5 1 9 78 97 -6.913 -0.044 -6.728 -6.940 -7.832 1.611 -1.956 -1.629 -1.460 D 7 5 3 8 5 0 2 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 5 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 62 U A - - MP 9 8 3 13 6 2 10 77 96 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 10 8 3 13 6 1 4 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 73 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 61 G C - - MP 15 14 6 19 6 2 9 75 94 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.338 -2.904 -4.408 0.461 -4.663 -4.529 -0.125 -4.616 -4.051 3.524 -4.419 -0.591 -0.523 -4.200 -2.143 -3.292 ML 16 14 6 19 6 1 3 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 60 U A - - MP 21 20 6 25 6 2 7 73 92 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 22 20 6 25 6 1 3 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 4 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 59 U A - - MP 27 26 6 31 6 2 6 71 90 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 28 26 6 31 6 1 2 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 58 C G - - MP 33 32 6 37 4 2 4 69 88 -6.721 -6.928 -0.062 -5.343 -4.138 -4.002 -3.894 -0.277 -2.710 -4.359 3.400 -3.478 -3.933 0.033 -4.235 -1.946 0.841 -4.232 -0.410 -2.788 ML 34 32 6 37 4 1 2 69 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 1 69 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 67 87 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 3 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 2 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - A - - - ML 39 38 6 41 3 1 3 66 86 -8.160 -0.021 -6.478 1.611 -1.956 -1.629 -1.460 D 40 38 6 41 3 0 0 65 84 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 2 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - A - - MR 42 41 3 44 5 1 2 65 85 -6.913 -0.044 -6.728 -6.940 -7.832 1.611 -1.956 -1.629 -1.460 D 43 41 3 44 5 0 0 64 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 56 C G - - MP 45 44 3 49 6 2 4 64 84 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.138 -4.002 -3.894 -0.277 -2.710 -4.359 3.400 -3.478 -3.933 0.033 -4.235 -1.946 0.841 -4.232 -0.410 -2.788 ML 46 44 3 49 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 55 U A - - MP 51 50 6 55 6 2 4 62 82 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 52 50 6 55 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 54 U A - - MP 57 56 6 61 6 2 3 60 80 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 58 56 6 61 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 53 A U - - MP 63 62 6 67 6 2 3 58 78 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.469 -2.588 -3.508 3.071 -3.689 -4.728 0.592 -3.568 -3.416 1.429 -3.947 -0.122 0.172 -3.967 -1.351 -2.364 ML 64 62 6 67 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 52 G C - - MP 69 68 6 73 6 2 3 56 76 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.338 -2.904 -4.408 0.461 -4.663 -4.529 -0.125 -4.616 -4.051 3.524 -4.419 -0.591 -0.523 -4.200 -2.143 -3.292 ML 70 68 6 73 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 51 A U - - MP 75 74 6 79 6 2 3 54 74 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.469 -2.588 -3.508 3.071 -3.689 -4.728 0.592 -3.568 -3.416 1.429 -3.947 -0.122 0.172 -3.967 -1.351 -2.364 ML 76 74 6 79 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 50 u g - - MP 81 80 6 85 6 2 2 52 72 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.680 -3.581 -3.475 0.042 -2.370 -3.970 1.904 -3.100 -3.512 0.309 -3.848 -1.595 1.118 -3.802 2.688 -2.405 ML 82 80 6 85 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 49 U A - - MP 87 86 6 91 4 2 2 50 70 -6.721 -6.928 -0.062 -5.343 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 88 86 6 91 4 1 1 51 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - G - - - ML 93 92 6 95 3 1 1 48 67 -8.160 -0.021 -6.478 -1.135 -2.279 1.596 -1.664 D 94 92 6 95 3 0 0 47 66 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - G - - MR 96 95 3 98 5 1 1 47 66 -6.913 -0.044 -6.728 -6.940 -7.832 -1.135 -2.279 1.596 -1.664 D 97 95 3 98 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 47 U A - - MP 99 98 3 103 4 2 2 46 65 -6.721 -6.928 -0.062 -5.343 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 100 98 3 103 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 3 103 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - - - ML 105 104 6 107 3 1 1 43 62 -8.160 -0.021 -6.478 -1.111 -1.176 -1.822 1.491 D 106 104 6 107 3 0 0 42 61 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 46 - U - - MR 108 107 3 110 5 1 1 42 61 -6.913 -0.044 -6.728 -6.940 -7.832 -1.111 -1.176 -1.822 1.491 D 109 107 3 110 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 45 C G - - MP 111 110 3 115 6 2 2 41 60 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.138 -4.002 -3.894 -0.277 -2.710 -4.359 3.400 -3.478 -3.933 0.033 -4.235 -1.946 0.841 -4.232 -0.410 -2.788 ML 112 110 3 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 44 U A - - MP 117 116 6 121 6 2 2 39 58 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 118 116 6 121 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 43 U A - - MP 123 122 6 127 6 2 2 37 56 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 42 A U - - MP 129 128 6 133 6 2 2 35 54 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.469 -2.588 -3.508 3.071 -3.689 -4.728 0.592 -3.568 -3.416 1.429 -3.947 -0.122 0.172 -3.967 -1.351 -2.364 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 41 G C - - MP 135 134 6 139 6 2 2 33 52 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.338 -2.904 -4.408 0.461 -4.663 -4.529 -0.125 -4.616 -4.051 3.524 -4.419 -0.591 -0.523 -4.200 -2.143 -3.292 ML 136 134 6 139 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 40 U A - - MP 141 140 6 145 6 2 2 31 50 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.781 -3.588 -3.662 0.084 -2.698 -4.263 1.619 -3.362 -3.672 0.411 -4.065 -1.499 3.088 -3.946 -0.384 -2.533 ML 142 140 6 145 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 39 A U - - MP 147 146 6 151 6 2 2 29 48 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.469 -2.588 -3.508 3.071 -3.689 -4.728 0.592 -3.568 -3.416 1.429 -3.947 -0.122 0.172 -3.967 -1.351 -2.364 ML 148 146 6 151 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 38 u g - - MP 153 152 6 157 6 2 2 27 46 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.680 -3.581 -3.475 0.042 -2.370 -3.970 1.904 -3.100 -3.512 0.309 -3.848 -1.595 1.118 -3.802 2.688 -2.405 ML 154 152 6 157 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 37 G C - - MP 159 158 6 163 6 2 2 25 44 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -4.338 -2.904 -4.408 0.461 -4.663 -4.529 -0.125 -4.616 -4.051 3.524 -4.419 -0.591 -0.523 -4.200 -2.143 -3.292 ML 160 158 6 163 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 36 A U - - MP 165 164 6 169 6 2 2 23 42 -9.025 -8.964 -0.022 -7.741 -8.021 -8.416 -3.469 -2.588 -3.508 3.071 -3.689 -4.728 0.592 -3.568 -3.416 1.429 -3.947 -0.122 0.172 -3.967 -1.351 -2.364 ML 166 164 6 169 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 35 G C - - MP 171 170 6 175 4 2 2 21 40 -6.721 -6.928 -0.062 -5.343 -4.338 -2.904 -4.408 0.461 -4.663 -4.529 -0.125 -4.616 -4.051 3.524 -4.419 -0.591 -0.523 -4.200 -2.143 -3.292 ML 172 170 6 175 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - u - - - ML 177 176 6 179 3 1 1 18 36 -7.755 -0.024 -6.409 -0.265 -0.830 0.265 0.489 D 178 176 6 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 180 179 3 182 3 1 1 16 35 -7.755 -0.024 -6.409 -1.111 -1.176 -1.822 1.491 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 183 182 3 185 3 1 1 15 33 -7.755 -0.024 -6.409 -1.135 -2.279 1.596 -1.664 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 186 185 3 188 3 1 1 13 32 -7.755 -0.024 -6.409 -1.111 -1.176 -1.822 1.491 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.111 -1.176 -1.822 1.491 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR1887 ACC RF03655 DESC MIR1887 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 18:06:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03655/CM NSEQ 2 EFFN 1.878906 CKSUM 2137849271 STATS LOCAL MSV -8.4492 0.72485 STATS LOCAL VITERBI -9.2530 0.72485 STATS LOCAL FORWARD -3.1319 0.72485 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40121 1.64834 1.36292 1.18606 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.39144 2.39327 2.89869 0.27171 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.72006 1.72175 2.43998 0.40315 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.43623 2.99527 0.21121 2.93975 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.72140 1.72178 2.44050 0.40294 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.72094 1.72177 2.44032 0.40301 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.96136 0.30575 2.70489 1.93236 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.20070 3.00315 2.75074 2.68336 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.95668 0.30642 2.70286 1.93161 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.71946 1.72174 2.43975 0.40324 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.72022 1.72176 2.44005 0.40312 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.45288 2.49747 1.63610 2.43983 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.43514 2.99412 0.21150 2.93811 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.45299 2.49717 1.63608 2.43937 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.72310 1.46668 2.48369 0.47771 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.71838 1.72172 2.43933 0.40341 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.45332 3.29458 0.19824 2.86937 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.71637 1.72169 2.43855 0.40372 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.39144 2.39327 2.89869 0.27171 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.95789 0.30624 2.70338 1.93180 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.71999 1.72175 2.43996 0.40316 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.72055 1.72176 2.44017 0.40307 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.45285 2.49754 1.63611 2.43994 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.43524 2.99423 0.21147 2.93827 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.71940 1.72174 2.43973 0.40325 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.45304 2.49704 1.63606 2.43916 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.72274 1.46669 2.48354 0.47776 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.43396 2.99288 0.21182 2.93634 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.45319 2.49664 1.63603 2.43855 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.43355 2.99245 0.21193 2.93573 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.63483 2.03090 1.15772 1.02278 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.39144 2.39327 2.89869 0.27171 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.45332 3.29458 0.19824 2.86937 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.39144 2.39327 2.89869 0.27171 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.39144 2.39327 2.89869 0.27171 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.14632 0.24893 2.82335 2.13752 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.66721 1.90331 2.31096 0.38226 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.14756 0.24878 2.82386 2.13776 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.97713 2.65678 0.34688 2.47137 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.66864 1.90342 2.31144 0.38203 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.45847 2.61924 1.55853 2.47166 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.15221 0.24825 2.82578 2.13867 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.67127 1.90363 2.31231 0.38159 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.45803 2.62070 1.55857 2.47359 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.45781 2.62144 1.55859 2.47458 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.21089 2.87598 0.26345 2.72355 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.39144 2.39327 2.89869 0.27171 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.45758 2.62218 1.55861 2.47556 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.45332 3.29458 0.19824 2.86937 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.45865 2.61864 1.55852 2.47087 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.97731 2.65701 0.34679 2.47166 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.66923 1.90347 2.31163 0.38193 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.15197 0.24827 2.82569 2.13862 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.67111 1.90361 2.31225 0.38162 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.45806 2.62061 1.55857 2.47347 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.45784 2.62133 1.55859 2.47443 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.21073 2.87578 0.26351 2.72330 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.20070 3.00315 2.75074 2.68336 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.20779 2.87217 0.26459 2.71868 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.45815 2.62029 1.55856 2.47306 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.45796 2.62093 1.55858 2.47390 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.16067 0.24728 2.82926 2.14029 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.45742 2.62274 1.55862 2.47631 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.20070 3.00315 2.75074 2.68336 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //