INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2818 ACC RF03630 DESC mir-2818 microRNA precursor family STATES 184 NODES 40 CLEN 60 W 76 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 00:48:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03630/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.582031 CKSUM 2615534503 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 90.10 NC 89.90 EFP7GF -6.4620 0.72556 ECMLC 0.65049 -4.82951 3.91975 1600000 355523 0.003375 ECMGC 0.43777 -14.75422 -1.19297 1600000 151469 0.002641 ECMLI 0.66247 -3.18803 5.07191 1600000 285506 0.004203 ECMGI 0.49212 -9.56014 1.80998 1600000 107680 0.003715 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 76 95 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 IL 1 1 2 1 6 1 12 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 12 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 60 A U - - MP 3 2 3 7 6 2 14 76 95 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 4 2 3 7 6 1 9 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 11 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 11 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 59 U A - - MP 9 8 6 13 6 2 12 74 93 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.910 -3.725 -3.778 -0.041 -2.783 -4.368 1.538 -3.458 -3.786 0.259 -4.173 -1.632 3.175 -4.071 -0.466 -2.637 ML 10 8 6 13 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 3 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 10 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 58 C G - - MP 15 14 6 19 6 2 10 72 91 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 16 14 6 19 6 1 7 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 5 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 57 C G - - MP 21 20 6 25 4 2 9 70 89 -6.798 -7.005 -0.059 -5.419 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 22 20 6 25 4 1 6 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 4 70 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 3 68 88 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 7 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 7 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 27 26 6 29 3 1 7 67 87 -8.226 -0.020 -6.543 -1.410 1.521 -2.221 -0.892 D 28 26 6 29 3 0 2 66 85 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 6 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 56 - U - - MR 30 29 3 32 3 1 6 66 86 -8.226 -0.020 -6.543 -1.234 -1.276 -1.954 1.538 D 31 29 3 32 3 0 1 65 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 5 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - A - - MR 33 32 3 35 3 1 6 65 85 -8.226 -0.020 -6.543 1.652 -2.094 -1.754 -1.610 D 34 32 3 35 3 0 0 64 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - U - - MR 36 35 3 38 5 1 6 64 84 -6.973 -0.042 -6.789 -7.001 -7.892 -1.234 -1.276 -1.954 1.538 D 37 35 3 38 5 0 0 63 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 53 g u - - MP 39 38 3 43 6 2 6 63 83 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 40 38 3 43 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 52 C G - - MP 45 44 6 49 6 2 5 61 81 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 46 44 6 49 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 51 C G - - MP 51 50 6 55 4 2 3 59 79 -6.798 -7.005 -0.059 -5.419 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 52 50 6 55 4 1 1 60 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 2 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - A - - - ML 57 56 6 59 3 1 2 57 76 -7.826 -0.023 -6.480 1.652 -2.094 -1.754 -1.610 D 58 56 6 59 3 0 0 55 75 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 60 59 3 62 3 1 2 56 75 -8.226 -0.020 -6.543 1.652 -2.094 -1.754 -1.610 D 61 59 3 62 3 0 0 54 74 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 1 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - G - - MR 63 62 3 65 3 1 1 55 74 -8.226 -0.020 -6.543 -1.284 -2.455 1.645 -1.840 D 64 62 3 65 3 0 0 53 72 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 49 - A - - MR 66 65 3 68 5 1 1 54 73 -6.973 -0.042 -6.789 -7.001 -7.892 1.652 -2.094 -1.754 -1.610 D 67 65 3 68 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 48 G C - - MP 69 68 3 73 6 2 2 53 72 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.553 0.375 -4.856 -4.587 -0.286 -4.774 -4.148 3.567 -4.505 -0.658 -0.679 -4.291 -2.310 -3.434 ML 70 68 3 73 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 47 G C - - MP 75 74 6 79 6 2 2 51 70 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.553 0.375 -4.856 -4.587 -0.286 -4.774 -4.148 3.567 -4.505 -0.658 -0.679 -4.291 -2.310 -3.434 ML 76 74 6 79 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 46 g u - - MP 81 80 6 85 6 2 2 49 68 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 82 80 6 85 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 45 A U - - MP 87 86 6 91 6 2 2 47 66 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 88 86 6 91 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 44 A U - - MP 93 92 6 97 4 2 2 45 64 -6.727 -7.973 -0.089 -4.426 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 94 92 6 97 4 1 1 44 63 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 44 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 42 61 -12.737 -14.007 -2.036 -0.404 IL 97 97 5 97 4 1 1 44 63 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 44 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 43 - U - - MR 99 98 6 101 5 1 1 43 62 -6.973 -0.042 -6.789 -7.001 -7.892 -1.234 -1.276 -1.954 1.538 D 100 98 6 101 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 42 G C - - MP 102 101 3 106 6 2 2 42 61 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.553 0.375 -4.856 -4.587 -0.286 -4.774 -4.148 3.567 -4.505 -0.658 -0.679 -4.291 -2.310 -3.434 ML 103 101 3 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 41 A U - - MP 108 107 6 112 6 2 2 40 59 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 40 u g - - MP 114 113 6 118 6 2 2 38 57 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.813 -3.722 -3.579 -0.085 -2.427 -4.051 1.852 -3.172 -3.617 0.157 -3.938 -1.732 1.044 -3.924 2.806 -2.502 ML 115 113 6 118 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 39 A U - - MP 120 119 6 124 6 2 2 36 55 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 38 U A - - MP 126 125 6 130 4 2 2 34 53 -6.798 -7.005 -0.059 -5.419 -3.910 -3.725 -3.778 -0.041 -2.783 -4.368 1.538 -3.458 -3.786 0.259 -4.173 -1.632 3.175 -4.071 -0.466 -2.637 ML 127 125 6 130 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - C - - - ML 132 131 6 134 3 1 1 31 50 -8.226 -0.020 -6.543 -1.410 1.521 -2.221 -0.892 D 133 131 6 134 3 0 0 30 49 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 37 - A - - MR 135 134 3 137 5 1 1 30 49 -6.973 -0.042 -6.789 -7.001 -7.892 1.652 -2.094 -1.754 -1.610 D 136 134 3 137 5 0 0 29 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 36 U A - - MP 138 137 3 142 6 2 2 29 48 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.910 -3.725 -3.778 -0.041 -2.783 -4.368 1.538 -3.458 -3.786 0.259 -4.173 -1.632 3.175 -4.071 -0.466 -2.637 ML 139 137 3 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 35 g u - - MP 144 143 6 148 6 2 2 27 46 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 145 143 6 148 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 34 U A - - MP 150 149 6 154 6 2 2 25 44 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.910 -3.725 -3.778 -0.041 -2.783 -4.368 1.538 -3.458 -3.786 0.259 -4.173 -1.632 3.175 -4.071 -0.466 -2.637 ML 151 149 6 154 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 33 A U - - MP 156 155 6 160 6 2 2 23 42 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 157 155 6 160 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 32 U A - - MP 162 161 6 166 4 2 2 21 40 -6.798 -7.005 -0.059 -5.419 -3.910 -3.725 -3.778 -0.041 -2.783 -4.368 1.538 -3.458 -3.786 0.259 -4.173 -1.632 3.175 -4.071 -0.466 -2.637 ML 163 161 6 166 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - G - - - ML 168 167 6 170 3 1 1 18 36 -7.826 -0.023 -6.480 -1.284 -2.455 1.645 -1.840 D 169 167 6 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 171 170 3 173 3 1 1 16 35 -7.826 -0.023 -6.480 1.652 -2.094 -1.754 -1.610 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 174 173 3 176 3 1 1 15 33 -7.826 -0.023 -6.480 -1.234 -1.276 -1.954 1.538 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - A - - - ML 177 176 3 179 3 1 1 13 32 -7.826 -0.023 -6.480 1.652 -2.094 -1.754 -1.610 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 1.652 -2.094 -1.754 -1.610 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2818 ACC RF03630 DESC mir-2818 microRNA precursor family LENG 60 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 00:48:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03630/CM NSEQ 2 EFFN 1.839844 CKSUM 2615534503 STATS LOCAL MSV -8.2880 0.72556 STATS LOCAL VITERBI -9.0129 0.72556 STATS LOCAL FORWARD -3.1763 0.72556 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28167 1.60093 1.39905 1.29503 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.46105 2.48246 1.62033 2.43036 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.71407 1.70726 2.42197 0.41004 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.95287 0.31063 2.68657 1.91931 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.94822 0.31129 2.68458 1.91858 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53540 0.27659 3.10450 2.14083 5 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.80990 2.63277 0.37964 2.52143 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.93916 0.31260 2.68069 1.91713 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.94039 0.31242 2.68122 1.91733 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.20547 2.98201 2.73172 2.66018 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.20547 2.98201 2.73172 2.66018 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.41967 2.96937 0.21642 2.91292 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.42155 2.97133 0.21590 2.91572 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.81093 2.63453 0.37892 2.52389 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.46417 2.47424 1.61964 2.41747 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.46422 2.47412 1.61963 2.41729 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.40768 2.95691 0.21977 2.89512 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.46557 2.47058 1.61933 2.41175 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.69876 1.45767 2.45946 0.48702 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.46471 2.47283 1.61952 2.41527 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.69595 1.70699 2.41506 0.41287 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53540 0.27659 3.10450 2.14083 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.69532 1.70698 2.41482 0.41297 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.81065 2.63405 0.37912 2.52322 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.69914 1.70704 2.41628 0.41237 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.46418 2.47420 1.61964 2.41741 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.69885 1.70704 2.41617 0.41241 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.43085 3.26852 0.20367 2.84318 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20547 2.98201 2.73172 2.66018 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.37215 2.37740 2.87838 0.27746 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.20547 2.98201 2.73172 2.66018 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.20547 2.98201 2.73172 2.66018 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.46897 2.59543 1.54380 2.45144 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.64886 1.88484 2.28921 0.39146 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.46867 2.59640 1.54382 2.45274 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.74526 1.69414 2.44034 0.40815 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.46820 2.59792 1.54384 2.45477 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.20547 2.98201 2.73172 2.66018 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.46931 2.59432 1.54378 2.44995 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.64577 1.88462 2.28820 0.39199 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.96499 2.63439 0.35379 2.45274 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.64695 1.88470 2.28859 0.39178 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.13047 0.25320 2.80280 2.12566 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.37215 2.37740 2.87838 0.27746 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.64795 1.88478 2.28891 0.39162 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.64894 1.88485 2.28924 0.39145 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.74366 1.69412 2.43974 0.40839 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.13759 0.25237 2.80571 2.12704 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.14113 0.25195 2.80715 2.12772 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.20547 2.98201 2.73172 2.66018 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.43085 3.26852 0.20367 2.84318 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.19348 2.84964 0.27002 2.69942 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.19429 2.85063 0.26972 2.70069 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.74744 1.69416 2.44116 0.40782 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.37215 2.37740 2.87838 0.27746 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.20547 2.98201 2.73172 2.66018 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.37215 2.37740 2.87838 0.27746 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.19580 2.85247 0.26915 2.70306 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.19776 2.85487 0.26841 2.70614 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.46682 2.60240 1.54392 2.46078 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.67267 1.88657 2.29691 0.38747 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //