INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-9440 ACC RF03608 DESC mir-9440 microRNA precursor family STATES 205 NODES 51 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 03:20:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03608/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.582031 CKSUM 4097415568 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 80.20 NC 79.90 EFP7GF -9.1389 0.71907 ECMLC 0.68186 -4.58189 3.72412 1600000 345797 0.003470 ECMGC 0.42953 -15.78666 -2.97442 1600000 98191 0.004074 ECMLI 0.68063 -2.45138 5.12582 1600000 208423 0.005758 ECMGI 0.47627 -10.68124 0.15041 1600000 69580 0.005749 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 103 -6.798 -7.005 -0.258 -2.764 IL 1 1 2 1 4 1 23 87 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - A - - - ML 3 2 3 5 3 1 22 83 103 -7.651 -0.026 -6.305 1.543 -1.754 -1.448 -1.242 D 4 2 3 5 3 0 19 82 102 -7.144 -0.626 -1.535 IL 5 5 3 5 3 1 22 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 3 - U - - - ML 6 5 3 8 3 1 21 82 102 -7.826 -0.023 -6.480 -1.234 -1.276 -1.954 1.538 D 7 5 3 8 3 0 17 81 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 4 - A - - - ML 9 8 3 11 3 1 20 81 101 -7.826 -0.023 -6.480 1.652 -2.094 -1.754 -1.610 D 10 8 3 11 3 0 17 80 100 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 5 - A - - - ML 12 11 3 14 3 1 19 80 100 -8.226 -0.184 -3.106 1.652 -2.094 -1.754 -1.610 D 13 11 3 14 3 0 16 79 99 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 20 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 68 - C - - MR 15 14 3 17 3 1 19 79 99 -8.065 -0.023 -6.383 -1.021 1.354 -1.808 -0.586 D 16 14 3 17 3 0 14 78 97 -7.241 -2.418 -0.311 IR 17 17 3 17 3 1 19 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 67 - G - - MR 18 17 3 20 3 1 18 78 98 -8.065 -0.023 -6.383 -0.920 -2.022 1.510 -1.407 D 19 17 3 20 3 0 13 77 97 -7.241 -0.661 -1.470 IR 20 20 3 20 3 1 17 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 66 - A - - MR 21 20 3 23 5 1 18 77 97 -6.973 -0.042 -6.789 -7.001 -7.892 1.652 -2.094 -1.754 -1.610 D 22 20 3 23 5 0 11 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 15 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 65 u g - - MP 24 23 3 28 6 2 17 76 96 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -2.710 -2.699 -2.774 0.656 -2.252 -3.507 1.780 -2.788 -2.814 0.882 -3.298 -0.918 1.261 -2.962 1.896 0.302 ML 25 23 3 28 6 1 13 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 12 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 8 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 14 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 14 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 64 c g - - MP 30 29 6 34 6 2 16 74 94 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.047 -3.019 -3.057 0.444 -2.317 -3.720 2.793 0.219 -3.078 0.645 -3.524 -1.179 1.270 -3.267 -0.092 -2.056 ML 31 29 6 34 6 1 12 73 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 11 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 8 71 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 13 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 13 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 63 A U - - MP 36 35 6 40 4 2 14 72 92 -6.798 -7.005 -0.059 -5.419 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 37 35 6 40 4 1 11 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 9 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 8 71 91 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 13 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 42 41 6 44 3 1 12 70 90 -7.826 -0.023 -6.480 1.652 -2.094 -1.754 -1.610 D 43 41 6 44 3 0 7 69 88 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 11 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 45 44 3 47 3 1 12 69 89 -8.226 -0.020 -6.543 -1.410 1.521 -2.221 -0.892 D 46 44 3 47 3 0 7 68 87 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - G - - MR 48 47 3 50 3 1 11 68 88 -8.226 -0.020 -6.543 0.104 -1.500 1.025 -0.898 D 49 47 3 50 3 0 5 66 86 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - U - - MR 51 50 3 53 5 1 11 67 87 -6.973 -0.042 -6.789 -7.001 -7.892 -1.234 -1.276 -1.954 1.538 D 52 50 3 53 5 0 4 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 8 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 60 g u - - MP 54 53 3 58 6 2 12 66 86 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 55 53 3 58 6 1 6 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 6 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 7 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 8 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 59 A U - - MP 60 59 6 64 6 2 11 64 84 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 61 59 6 64 6 1 5 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 5 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 7 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 7 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 58 G C - - MP 66 65 6 70 6 2 10 62 82 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.553 0.375 -4.856 -4.587 -0.286 -4.774 -4.148 3.567 -4.505 -0.658 -0.679 -4.291 -2.310 -3.434 ML 67 65 6 70 6 1 5 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 4 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 1 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 6 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 6 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 57 A U - - MP 72 71 6 76 6 2 8 60 80 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 73 71 6 76 6 1 4 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 1 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 5 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 5 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 56 G C - - MP 78 77 6 82 4 2 6 58 78 -6.798 -7.005 -0.059 -5.419 -3.162 -2.467 -3.258 0.908 -3.380 -3.906 0.672 -3.539 -0.237 3.021 -3.700 -0.324 0.368 -3.294 -1.171 -2.293 ML 79 77 6 82 4 1 3 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 2 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 1 57 77 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 5 60 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 4 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - - - ML 84 83 6 86 3 1 5 56 75 -7.826 -0.023 -6.480 -1.234 -1.276 -1.954 1.538 D 85 83 6 86 3 0 0 54 74 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - G - - - ML 87 86 3 89 3 1 4 54 74 -7.826 -0.023 -6.480 -1.284 -2.455 1.645 -1.840 D 88 86 3 89 3 0 0 53 73 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 90 89 3 92 3 1 4 53 73 -8.226 -0.020 -6.543 -1.234 -1.276 -1.954 1.538 D 91 89 3 92 3 0 0 52 72 -5.620 -0.734 -1.403 IL 92 92 3 92 3 1 2 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - c - - MR 93 92 3 95 3 1 3 52 72 -8.226 -0.020 -6.543 -0.724 0.909 -1.514 0.223 D 94 92 3 95 3 0 0 51 70 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - U - - MR 96 95 3 98 3 1 3 51 71 -8.226 -0.020 -6.543 -1.234 -1.276 -1.954 1.538 D 97 95 3 98 3 0 0 50 69 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - C - - MR 99 98 3 101 5 1 2 50 70 -6.973 -0.042 -6.789 -7.001 -7.892 -1.410 1.521 -2.221 -0.892 D 100 98 3 101 5 0 0 49 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 52 C G - - MP 102 101 3 106 6 2 4 49 69 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 103 101 3 106 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 51 A U - - MP 108 107 6 112 6 2 3 47 67 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 109 107 6 112 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 50 A U - - MP 114 113 6 118 6 2 3 45 65 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 115 113 6 118 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 49 C G - - MP 120 119 6 124 4 2 2 43 63 -6.798 -7.005 -0.059 -5.419 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 121 119 6 124 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 43 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 42 62 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - C - - - ML 126 125 6 128 3 1 1 41 60 -7.826 -0.023 -6.480 -1.410 1.521 -2.221 -0.892 D 127 125 6 128 3 0 0 40 59 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - U - - - ML 129 128 3 131 3 1 1 40 59 -8.226 -0.020 -6.543 -1.234 -1.276 -1.954 1.538 D 130 128 3 131 3 0 0 39 58 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 48 - U - - MR 132 131 3 134 3 1 1 39 58 -8.226 -0.020 -6.543 -1.234 -1.276 -1.954 1.538 D 133 131 3 134 3 0 0 37 56 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 47 - C - - MR 135 134 3 137 5 1 1 38 57 -6.973 -0.042 -6.789 -7.001 -7.892 -1.410 1.521 -2.221 -0.892 D 136 134 3 137 5 0 0 36 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 25 46 g u - - MP 138 137 3 142 6 2 2 37 56 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 139 137 3 142 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 45 C G - - MP 144 143 6 148 6 2 2 35 54 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 145 143 6 148 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 44 C G - - MP 150 149 6 154 6 2 2 33 52 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 151 149 6 154 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 31 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 43 g u - - MP 156 155 6 160 6 2 2 31 50 -9.052 -8.991 -0.022 -7.768 -8.048 -8.443 -3.445 -2.283 -3.596 1.233 -4.171 -4.901 0.189 -3.644 -3.308 1.589 -3.820 2.876 -0.173 -4.142 -1.752 -2.335 ML 157 155 6 160 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 42 C G - - MP 162 161 6 166 4 2 2 29 48 -6.798 -7.005 -0.059 -5.419 -4.273 -4.153 -4.008 -0.412 -2.790 -4.456 3.455 -3.572 -4.050 -0.128 -4.339 -2.097 0.750 -4.360 -0.492 -2.900 ML 163 161 6 166 4 1 1 29 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - G - - - ML 168 167 6 170 3 1 1 26 45 -7.826 -0.023 -6.480 -1.284 -2.455 1.645 -1.840 D 169 167 6 170 3 0 0 25 44 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - A - - - ML 171 170 3 173 3 1 1 25 44 -8.226 -0.020 -6.543 1.652 -2.094 -1.754 -1.610 D 172 170 3 173 3 0 0 24 43 -5.620 -0.734 -1.403 IL 173 173 3 173 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 41 - A - - MR 174 173 3 176 3 1 1 24 43 -8.226 -0.020 -6.543 1.652 -2.094 -1.754 -1.610 D 175 173 3 176 3 0 0 23 41 -6.390 -1.568 -0.620 IR 176 176 3 176 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 40 - G - - MR 177 176 3 179 5 1 1 23 42 -6.973 -0.042 -6.789 -7.001 -7.892 -1.284 -2.455 1.645 -1.840 D 178 176 3 179 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 179 179 3 179 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 32 39 A U - - MP 180 179 3 184 4 2 2 22 41 -6.798 -7.005 -0.059 -5.419 -3.571 -2.661 -3.604 3.166 -3.834 -4.879 0.452 -3.659 -3.506 1.317 -4.043 -0.176 0.033 -4.103 -1.490 -2.452 ML 181 179 3 184 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 3 184 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 3 184 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - G - - - ML 186 185 6 188 3 1 1 19 38 -7.826 -0.023 -6.480 -1.284 -2.455 1.645 -1.840 D 187 185 6 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - G - - - ML 189 188 3 191 3 1 1 18 36 -7.826 -0.023 -6.480 -1.284 -2.455 1.645 -1.840 D 190 188 3 191 3 0 0 17 36 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - U - - - ML 192 191 3 194 3 1 1 16 35 -7.826 -0.023 -6.480 -1.234 -1.276 -1.954 1.538 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - C - - - ML 195 194 3 197 3 1 1 15 33 -7.826 -0.023 -6.480 -1.410 1.521 -2.221 -0.892 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - U - - - ML 198 197 3 200 3 1 1 13 32 -7.826 -0.023 -6.480 -1.234 -1.276 -1.954 1.538 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 38 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.652 -2.094 -1.754 -1.610 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-9440 ACC RF03608 DESC mir-9440 microRNA precursor family LENG 67 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 03:20:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03608/CM NSEQ 4 EFFN 2.113281 CKSUM 4097415568 STATS LOCAL MSV -7.9295 0.71907 STATS LOCAL VITERBI -8.6540 0.71907 STATS LOCAL FORWARD -3.9303 0.71907 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46420 1.48199 1.32470 1.28855 1.38629 1.38629 1.38629 1.38629 0.56752 1.26771 1.88656 0.14758 1.98626 0.00000 * 1 0.24055 2.84130 2.60518 2.50639 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.05115 3.69170 3.69170 1.46634 0.26236 0.25167 1.50282 2 2.50452 2.48658 3.01736 0.24059 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 3 0.17527 3.12613 2.86140 2.81846 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 4 0.17527 3.12613 2.86140 2.81846 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 5 2.21475 1.49908 2.00415 0.62978 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 6 2.37556 0.53990 2.16358 1.56391 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 7 0.39232 2.63524 1.73511 2.57135 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 8 0.17527 3.12613 2.86140 2.81846 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 9 2.70913 0.23126 3.28320 2.27922 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 10 1.86905 2.78162 0.33703 2.66061 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 11 0.39178 2.63697 1.73536 2.57393 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 12 2.51322 3.12367 0.18832 3.06511 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 13 0.39174 2.63712 1.73538 2.57414 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 14 2.06189 2.38928 0.38756 2.27904 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 15 2.50452 2.48658 3.01736 0.24059 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 16 2.58290 3.44404 0.16998 3.01942 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 17 2.50452 2.48658 3.01736 0.24059 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 18 3.07794 0.27043 2.84045 2.02123 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 19 0.39180 2.63691 1.73535 2.57384 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 20 0.39173 2.63716 1.73539 2.57420 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 21 3.08201 0.26992 2.84231 2.02192 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 22 2.70913 0.23126 3.28320 2.27922 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 23 2.50452 2.48658 3.01736 0.24059 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 24 1.86908 2.78168 0.33701 2.66070 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 25 3.08169 0.26996 2.84217 2.02187 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 26 3.08245 0.26987 2.84251 2.02199 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 27 1.86975 2.78295 0.33659 2.66241 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 28 3.08144 0.26999 2.84205 2.02182 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 29 2.58290 3.44404 0.16998 3.01942 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 30 0.17527 3.12613 2.86140 2.81846 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 31 0.39206 2.63608 1.73523 2.57260 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 32 2.58290 3.44404 0.16998 3.01942 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 33 2.58290 3.44404 0.16998 3.01942 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 34 2.50452 2.48658 3.01736 0.24059 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 35 2.70913 0.23126 3.28320 2.27922 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 36 2.50452 2.48658 3.01736 0.24059 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 37 0.17527 3.12613 2.86140 2.81846 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 38 2.81063 2.01726 2.45299 0.32742 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 39 2.58290 3.44404 0.16998 3.01942 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 40 0.17527 3.12613 2.86140 2.81846 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 41 2.29840 3.00982 0.23338 2.84000 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 42 2.87758 1.81348 2.58475 0.34923 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 43 2.29989 3.01175 0.23289 2.84239 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 44 2.30096 3.01315 0.23254 2.84412 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 45 2.88470 1.81374 2.58761 0.34830 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 46 2.70913 0.23126 3.28320 2.27922 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 47 2.50452 2.48658 3.01736 0.24059 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 48 2.29902 3.01062 0.23318 2.84099 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 49 2.80568 2.01676 2.45123 0.32814 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 50 2.80776 2.01697 2.45197 0.32784 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 51 2.30231 3.01491 0.23210 2.84630 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 52 2.70913 0.23126 3.28320 2.27922 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 53 2.50452 2.48658 3.01736 0.24059 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 54 2.03446 0.66998 2.60134 1.26106 55 C - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 55 1.95819 0.53985 2.20483 1.79709 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 56 2.80413 2.01661 2.45068 0.32837 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 57 3.27842 0.22156 2.95866 2.21500 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 58 2.80784 2.01698 2.45200 0.32783 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 59 2.88465 1.81374 2.58758 0.34831 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 60 2.50452 2.48658 3.01736 0.24059 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 61 1.34647 2.58026 0.59764 2.17174 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 62 2.80243 2.01643 2.45007 0.32861 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 63 1.82153 2.33508 0.61544 1.60438 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 64 1.81784 2.17735 0.67823 1.52894 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.04435 3.83085 3.83085 1.46634 0.26236 1.09861 0.40547 65 0.17527 3.12613 2.86140 2.81846 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.18951 3.83085 1.89087 1.46634 0.26236 1.09861 0.40547 66 2.28194 3.09457 0.24430 2.66837 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.05111 3.69245 3.69245 1.46634 0.26236 2.19261 0.11836 67 2.36988 0.32966 2.93191 2.00960 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.02588 3.66722 * 1.46634 0.26236 0.00000 * //