INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8250 ACC RF03602 DESC mir-8250 microRNA precursor family STATES 184 NODES 40 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 11:43:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03602/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.230469 CKSUM 861019833 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 83.10 NC 40.00 EFP7GF -10.9485 0.71935 ECMLC 0.61372 -5.66533 3.87367 1600000 418483 0.002868 ECMGC 0.43812 -14.82696 -0.41765 1600000 220691 0.001812 ECMLI 0.59617 -4.55502 4.76822 1600000 311231 0.003856 ECMGI 0.49105 -9.67207 2.33592 1600000 145511 0.002749 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -6.973 -8.219 -0.075 -4.672 IL 1 1 2 1 4 1 2 76 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 60 - A - - MR 3 2 3 5 3 1 5 75 94 -8.458 -0.017 -6.776 1.763 -2.595 -2.205 -2.160 D 4 2 3 5 3 0 0 73 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 3 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 59 - u - - MR 6 5 3 8 5 1 5 74 93 -7.190 -0.036 -7.006 -7.218 -8.109 0.186 -0.246 -0.293 0.266 D 7 5 3 8 5 0 0 73 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 58 c g - - MP 9 8 3 13 6 2 6 73 92 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.770 -3.706 -3.643 0.056 -2.568 -4.216 2.663 -3.282 -3.651 0.289 -4.041 -1.673 2.408 -3.909 -0.237 -2.516 ML 10 8 3 13 6 1 1 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 57 c g - - MP 15 14 6 19 6 2 5 71 90 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.893 -3.895 -3.707 -0.195 -2.558 -4.205 2.786 -3.308 -3.735 -0.003 -4.085 -1.958 1.017 -4.005 2.019 -2.612 ML 16 14 6 19 6 1 1 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 56 C G - - MP 21 20 6 25 6 2 5 69 88 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.793 -4.720 -4.441 -0.931 -3.108 -4.821 3.620 -3.942 -4.499 -0.723 -4.733 -2.671 0.381 -4.846 -0.821 -3.331 ML 22 20 6 25 6 1 1 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 55 U G - - MP 27 26 6 31 6 2 5 67 86 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.322 -4.251 -3.971 -0.564 -2.659 -4.358 1.632 -3.453 -4.014 -0.410 -4.281 -2.245 0.752 -4.384 3.140 -2.873 ML 28 26 6 31 6 1 1 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 54 c g - - MP 33 32 6 37 6 2 4 65 84 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.770 -3.706 -3.643 0.056 -2.568 -4.216 2.663 -3.282 -3.651 0.289 -4.041 -1.673 2.408 -3.909 -0.237 -2.516 ML 34 32 6 37 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 53 U G - - MP 39 38 6 43 6 2 4 63 82 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.322 -4.251 -3.971 -0.564 -2.659 -4.358 1.632 -3.453 -4.014 -0.410 -4.281 -2.245 0.752 -4.384 3.140 -2.873 ML 40 38 6 43 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 52 A U - - MP 45 44 6 49 6 2 4 61 80 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.994 -2.975 -3.997 3.448 -4.438 -5.521 -0.124 -4.025 -3.881 0.859 -4.439 -0.419 -0.541 -4.674 -2.064 -2.819 ML 46 44 6 49 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 51 U A - - MP 51 50 6 55 6 2 3 59 78 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 52 50 6 55 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 50 U A - - MP 57 56 6 61 4 2 2 57 76 -6.973 -8.219 -0.075 -4.672 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 58 56 6 61 4 1 1 56 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 56 75 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 54 73 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 1 56 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 49 - U - - MR 63 62 6 65 5 1 1 55 74 -7.190 -0.036 -7.006 -7.218 -8.109 -1.692 -1.653 -2.436 1.673 D 64 62 6 65 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 48 U A - - MP 66 65 3 70 6 2 2 54 73 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 67 65 3 70 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 47 g c - - MP 72 71 6 76 6 2 2 52 71 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.526 -2.462 -3.537 1.741 -4.136 -4.356 0.296 -3.903 -3.600 2.831 -4.032 1.031 0.025 -3.621 -1.642 -2.460 ML 73 71 6 76 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 46 u a - - MP 78 77 6 82 6 2 2 50 69 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -2.801 -2.880 -2.868 0.447 -2.301 -3.590 1.717 1.289 -2.907 0.554 -3.394 -1.196 1.801 -3.058 1.142 -1.946 ML 79 77 6 82 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 45 C G - - MP 84 83 6 88 6 2 2 48 67 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.793 -4.720 -4.441 -0.931 -3.108 -4.821 3.620 -3.942 -4.499 -0.723 -4.733 -2.671 0.381 -4.846 -0.821 -3.331 ML 85 83 6 88 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 44 U A - - MP 90 89 6 94 6 2 2 46 65 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 91 89 6 94 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 43 G C - - MP 96 95 6 100 6 2 2 44 63 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.961 -3.199 -5.084 0.052 -5.541 -4.778 -0.851 -5.340 -4.468 3.687 -4.790 -0.907 -1.230 -4.611 -2.900 -3.957 ML 97 95 6 100 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 42 G C - - MP 102 101 6 106 6 2 2 42 61 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.933 -2.691 -3.942 1.566 -4.528 -4.531 0.031 -4.286 -3.891 3.230 -4.293 -0.319 -0.274 -3.926 -1.957 -2.839 ML 103 101 6 106 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 41 a u - - MP 108 107 6 112 4 2 2 40 59 -7.066 -7.273 -0.049 -5.687 -3.036 -2.734 -3.093 2.362 -2.723 -3.899 1.429 -3.143 -3.124 1.239 -3.613 -0.662 0.963 -3.281 0.978 -2.092 ML 109 107 6 112 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - - - ML 114 113 6 116 3 1 1 37 56 -8.075 -0.019 -6.729 -1.692 -1.653 -2.436 1.673 D 115 113 6 116 3 0 0 36 55 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - - - ML 117 116 3 119 3 1 1 36 55 -8.075 -0.019 -6.729 -0.901 -0.155 -1.657 1.170 D 118 116 3 119 3 0 0 35 54 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - g - - - ML 120 119 3 122 5 1 1 35 54 -7.190 -0.036 -7.006 -7.218 -8.109 -0.407 0.178 0.445 -0.409 D 121 119 3 122 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 122 122 3 122 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 40 G C - - MP 123 122 3 127 6 2 2 34 53 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.961 -3.199 -5.084 0.052 -5.541 -4.778 -0.851 -5.340 -4.468 3.687 -4.790 -0.907 -1.230 -4.611 -2.900 -3.957 ML 124 122 3 127 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 39 A U - - MP 129 128 6 133 6 2 2 32 51 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -3.994 -2.975 -3.997 3.448 -4.438 -5.521 -0.124 -4.025 -3.881 0.859 -4.439 -0.419 -0.541 -4.674 -2.064 -2.819 ML 130 128 6 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 38 U A - - MP 135 134 6 139 6 2 2 30 49 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 136 134 6 139 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 37 U A - - MP 141 140 6 145 6 2 2 28 47 -9.154 -9.093 -0.020 -7.870 -8.149 -8.544 -4.454 -4.285 -4.262 -0.562 -3.150 -4.802 1.183 -3.863 -4.265 -0.344 -4.625 -2.175 3.440 -4.594 -0.819 -3.061 ML 142 140 6 145 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 36 G C - - MP 147 146 6 151 4 2 2 26 45 -7.066 -7.273 -0.049 -5.687 -4.961 -3.199 -5.084 0.052 -5.541 -4.778 -0.851 -5.340 -4.468 3.687 -4.790 -0.907 -1.230 -4.611 -2.900 -3.957 ML 148 146 6 151 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - U - - - ML 153 152 6 155 3 1 1 23 42 -8.075 -0.019 -6.729 -1.692 -1.653 -2.436 1.673 D 154 152 6 155 3 0 0 22 41 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - a - - - ML 156 155 3 158 3 1 1 22 41 -8.075 -0.019 -6.729 0.526 -0.135 -1.038 0.218 D 157 155 3 158 3 0 0 21 40 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - A - - - ML 159 158 3 161 3 1 1 21 40 -8.075 -0.019 -6.729 1.763 -2.595 -2.205 -2.160 D 160 158 3 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - U - - - ML 162 161 3 164 3 1 1 20 39 -8.075 -0.019 -6.729 -1.692 -1.653 -2.436 1.673 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - U - - - ML 165 164 3 167 3 1 1 19 37 -8.075 -0.019 -6.729 -1.692 -1.653 -2.436 1.673 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - u - - - ML 168 167 3 170 3 1 1 17 36 -8.075 -0.019 -6.729 -0.426 -0.987 0.309 0.596 D 169 167 3 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - a - - - ML 171 170 3 173 3 1 1 16 35 -8.075 -0.019 -6.729 0.684 -1.504 0.596 -0.919 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 174 173 3 176 3 1 1 15 33 -8.075 -0.019 -6.729 0.775 -1.489 0.484 -0.906 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - A - - - ML 177 176 3 179 3 1 1 13 31 -8.075 -0.019 -6.729 1.763 -2.595 -2.205 -2.160 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - U - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -1.692 -1.653 -2.436 1.673 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8250 ACC RF03602 DESC mir-8250 microRNA precursor family LENG 60 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 11:43:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03602/CM NSEQ 4 EFFN 3.488281 CKSUM 861019833 STATS LOCAL MSV -8.3919 0.71935 STATS LOCAL VITERBI -8.5672 0.71935 STATS LOCAL FORWARD -3.7266 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39148 1.67465 1.45783 1.10510 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 0.00000 * 1 2.78875 0.83416 2.55757 0.85151 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 2 3.07726 0.73496 2.88537 0.87095 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 3 3.70362 0.14463 3.53621 2.51456 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 4 3.35142 1.82739 3.19807 0.27012 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 5 2.79010 0.83398 2.55816 0.85139 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 6 3.34966 1.82734 3.19713 0.27026 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 7 0.19048 3.38780 2.27919 3.28910 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 8 3.55737 2.36440 3.37101 0.17064 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 9 3.55654 2.36432 3.37058 0.17069 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 10 3.53036 2.36165 3.35684 0.17245 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 11 1.42666 2.68540 0.49143 2.52640 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 12 2.58603 0.87316 2.43211 0.86941 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 13 3.69525 0.14517 3.53169 2.51297 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 14 3.55590 2.36425 3.37025 0.17074 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 15 2.89846 3.71046 0.11163 3.64768 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 16 1.56260 2.92537 0.39265 2.78872 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 17 0.83290 1.90299 1.90483 1.31959 17 a - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 18 3.07165 2.95964 3.60377 0.13399 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 19 2.28954 1.49770 2.82711 0.48474 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 20 1.86363 1.18404 0.95584 1.86846 20 g - - - 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 21 2.90736 3.72300 0.11025 3.66470 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 22 0.18981 3.39294 2.28044 3.29589 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 23 3.56614 2.36528 3.37557 0.17006 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 24 3.56346 2.36501 3.37418 0.17024 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 25 2.90103 3.71408 0.11123 3.65259 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 26 3.07165 2.95964 3.60377 0.13399 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 27 0.98357 1.45311 2.22758 1.25739 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 28 0.09261 3.72178 3.40166 3.47550 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 29 3.07165 2.95964 3.60377 0.13399 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 30 3.07165 2.95964 3.60377 0.13399 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 31 1.84126 2.23966 1.08942 0.92010 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 32 0.86133 2.70753 0.88619 2.31793 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 33 0.78782 2.69687 0.97173 2.30942 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 34 0.09261 3.72178 3.40166 3.47550 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 35 3.07165 2.95964 3.60377 0.13399 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 36 3.82289 0.13382 3.55900 2.59133 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 37 0.19344 3.56461 2.20024 3.30238 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 38 0.19345 3.56449 2.20022 3.30225 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 39 3.50412 2.62855 3.19410 0.15462 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 40 3.81318 0.13437 3.55426 2.58951 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 41 2.18390 2.10169 1.20175 0.76683 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 42 3.02273 0.44635 2.73946 1.39931 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 43 3.81906 0.13404 3.55714 2.59061 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 44 0.19356 3.56348 2.20004 3.30116 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 45 2.79424 3.69983 0.12445 3.46957 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 46 1.38217 2.59851 1.03515 1.14128 46 g - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 47 2.77660 0.73977 2.49591 0.97258 47 c - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 48 0.19264 3.57224 2.20153 3.31066 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 49 3.07165 2.95964 3.60377 0.13399 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 50 0.19369 3.56226 2.19984 3.29983 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 51 0.19362 3.56289 2.19994 3.30051 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 52 3.50464 2.62864 3.19434 0.15458 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 53 2.41316 3.38099 0.18542 3.08575 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 54 0.94568 2.72674 0.75874 2.55234 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 55 2.41449 3.38337 0.18504 3.08824 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 56 2.79817 3.70603 0.12376 3.47653 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 57 2.20606 3.04820 0.24315 2.84271 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 58 0.94533 2.73073 0.75765 2.55735 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 59 1.26452 1.54653 1.57537 1.21164 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.03403 4.09056 4.09056 1.46634 0.26236 1.09861 0.40547 60 0.09261 3.72178 3.40166 3.47550 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.01716 4.07369 * 1.46634 0.26236 0.00000 * //