INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3569 ACC RF03595 DESC mir-3569 microRNA precursor family STATES 178 NODES 40 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 01:29:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03595/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.738281 CKSUM 1458962438 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.40 NC 41.90 EFP7GF -5.3325 0.72994 ECMLC 0.58930 -6.81862 3.21777 1600000 444428 0.002700 ECMGC 0.43216 -16.31915 -2.35153 1600000 167321 0.002391 ECMLI 0.60561 -4.77579 4.22614 1600000 279770 0.004289 ECMGI 0.46420 -11.79772 0.41280 1600000 115793 0.003454 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 93 -6.867 -7.074 -0.056 -5.489 IL 1 1 2 1 4 1 8 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 7 73 93 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 4 2 3 5 3 0 2 72 92 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 7 72 92 -8.285 -0.020 -6.603 -1.562 1.572 -2.379 -1.012 D 7 5 3 8 3 0 2 71 90 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 5 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 58 - C - - MR 9 8 3 11 3 1 6 71 91 -8.285 -0.020 -6.603 -1.562 1.572 -2.379 -1.012 D 10 8 3 11 3 0 1 70 89 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 5 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - G - - MR 12 11 3 14 3 1 5 70 90 -8.285 -0.020 -6.603 -1.421 -2.615 1.684 -2.001 D 13 11 3 14 3 0 0 69 88 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 4 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - A - - MR 15 14 3 17 3 1 5 69 89 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 16 14 3 17 3 0 0 68 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 3 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 55 - C - - MR 18 17 3 20 3 1 4 68 88 -8.285 -0.020 -6.603 -1.562 1.572 -2.379 -1.012 D 19 17 3 20 3 0 0 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 3 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 54 - C - - MR 21 20 3 23 5 1 4 67 87 -7.029 -0.041 -6.844 -7.056 -7.948 -1.562 1.572 -2.379 -1.012 D 22 20 3 23 5 0 0 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 2 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 3 53 g u - - MP 24 23 3 28 6 2 5 66 86 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.523 -2.329 -3.682 1.189 -4.322 -5.048 0.054 -3.718 -3.370 1.483 -3.886 2.978 -0.306 -4.275 -1.887 -2.403 ML 25 23 3 28 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 4 52 G C - - MP 30 29 6 34 6 2 5 64 84 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 31 29 6 34 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 51 A U - - MP 36 35 6 40 6 2 5 62 82 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.671 -2.734 -3.698 3.248 -3.977 -5.029 0.315 -3.748 -3.595 1.209 -4.137 -0.230 -0.103 -4.236 -1.626 -2.539 ML 37 35 6 40 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 50 G C - - MP 42 41 6 46 6 2 4 60 80 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 43 41 6 46 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 49 G C - - MP 48 47 6 52 6 2 4 58 78 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 49 47 6 52 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 48 A U - - MP 54 53 6 58 6 2 3 56 76 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.671 -2.734 -3.698 3.248 -3.977 -5.029 0.315 -3.748 -3.595 1.209 -4.137 -0.230 -0.103 -4.236 -1.626 -2.539 ML 55 53 6 58 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 47 g c - - MP 60 59 6 64 4 2 2 54 74 -6.867 -7.074 -0.056 -5.489 -3.183 -2.543 -3.278 0.721 -3.276 0.524 0.728 -3.558 -3.269 2.953 -3.695 -0.528 0.377 -3.243 -1.099 -2.362 ML 61 59 6 64 4 1 1 55 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - A - - - ML 66 65 6 68 3 1 1 52 71 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 67 65 6 68 3 0 0 50 70 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - G - - MR 69 68 3 71 5 1 1 51 70 -7.029 -0.041 -6.844 -7.056 -7.948 -1.421 -2.615 1.684 -2.001 D 70 68 3 71 5 0 0 49 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 45 G C - - MP 72 71 3 76 6 2 2 50 69 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 73 71 3 76 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 44 C G - - MP 78 77 6 82 6 2 2 48 67 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.401 -4.294 -4.116 -0.540 -2.867 -4.547 3.503 -3.662 -4.161 -0.277 -4.437 -2.239 0.662 -4.480 -0.570 -3.006 ML 79 77 6 82 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 43 A U - - MP 84 83 6 88 6 2 2 46 65 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.671 -2.734 -3.698 3.248 -3.977 -5.029 0.315 -3.748 -3.595 1.209 -4.137 -0.230 -0.103 -4.236 -1.626 -2.539 ML 85 83 6 88 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 42 G C - - MP 90 89 6 94 6 2 2 44 63 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 91 89 6 94 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 41 A U - - MP 96 95 6 100 6 2 2 42 61 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.671 -2.734 -3.698 3.248 -3.977 -5.029 0.315 -3.748 -3.595 1.209 -4.137 -0.230 -0.103 -4.236 -1.626 -2.539 ML 97 95 6 100 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 40 C G - - MP 102 101 6 106 6 2 2 40 59 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.401 -4.294 -4.116 -0.540 -2.867 -4.547 3.503 -3.662 -4.161 -0.277 -4.437 -2.239 0.662 -4.480 -0.570 -3.006 ML 103 101 6 106 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 39 u a - - MP 108 107 6 112 6 2 2 38 57 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.058 -3.119 -3.055 0.334 1.359 -3.714 1.853 -2.925 -3.091 0.471 -3.540 -1.352 2.244 -3.277 -0.087 -2.077 ML 109 107 6 112 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 38 g c - - MP 114 113 6 118 6 2 2 36 55 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.353 -2.818 -3.342 0.806 -2.871 -4.032 2.201 -3.329 -3.386 2.369 -3.821 -0.627 1.024 -3.457 -0.506 -2.256 ML 115 113 6 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 37 a u - - MP 120 119 6 124 4 2 2 34 53 -6.867 -7.074 -0.513 -1.820 -3.257 -2.303 -3.372 2.374 -3.895 -4.595 0.336 -3.554 -3.244 1.689 -3.777 1.955 0.071 -3.755 -1.556 -2.221 ML 121 119 6 124 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - U - - - ML 126 125 6 128 5 1 1 31 50 -6.690 -0.052 -6.505 -6.718 -7.609 -0.675 -0.831 -1.349 1.275 D 127 125 6 128 5 0 0 30 49 -6.092 -0.312 -5.353 -3.728 -3.641 IL 128 128 3 128 5 1 1 32 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 36 G C - - MP 129 128 3 133 6 2 2 30 49 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 130 128 3 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 35 G C - - MP 135 134 6 139 6 2 2 28 47 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 136 134 6 139 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 34 U A - - MP 141 140 6 145 6 2 2 26 45 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.037 -3.857 -3.892 -0.163 -2.867 -4.470 1.457 -3.552 -3.898 0.114 -4.279 -1.761 3.250 -4.194 -0.547 -2.737 ML 142 140 6 145 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 33 C G - - MP 147 146 6 151 4 2 2 24 43 -6.867 -7.074 -0.056 -5.489 -4.401 -4.294 -4.116 -0.540 -2.867 -4.547 3.503 -3.662 -4.161 -0.277 -4.437 -2.239 0.662 -4.480 -0.570 -3.006 ML 148 146 6 151 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - G - - - ML 153 152 6 155 3 1 1 21 40 -7.890 -0.022 -6.544 -1.421 -2.615 1.684 -2.001 D 154 152 6 155 3 0 0 20 39 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 156 155 3 158 3 1 1 20 39 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 157 155 3 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 159 158 3 161 3 1 1 19 37 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 162 161 3 164 3 1 1 18 36 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - U - - - ML 165 164 3 167 3 1 1 16 35 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - C - - - ML 168 167 3 170 3 1 1 15 33 -7.890 -0.022 -6.544 -1.562 1.572 -2.379 -1.012 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - g - - - ML 171 170 3 173 3 1 1 13 32 -7.890 -0.022 -6.544 -0.296 0.179 0.300 -0.282 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - G - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.421 -2.615 1.684 -2.001 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3569 ACC RF03595 DESC mir-3569 microRNA precursor family LENG 58 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 01:29:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03595/CM NSEQ 2 EFFN 1.675781 CKSUM 1458962438 STATS LOCAL MSV -7.5565 0.72994 STATS LOCAL VITERBI -9.2704 0.72994 STATS LOCAL FORWARD -2.8803 0.72994 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55227 1.26275 1.21096 1.57288 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.28984 2.30985 2.79137 0.30367 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.42703 0.31008 2.99175 2.05485 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 1.77560 2.54009 0.40934 2.43420 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.36422 2.87334 0.23589 2.82008 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.51533 2.37724 1.55108 2.32410 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.36514 2.87423 0.23562 2.82138 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.36498 2.87408 0.23567 2.82116 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.51538 2.37711 1.55108 2.32389 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.02986 1.58557 0.63520 2.01004 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.22741 2.89116 2.65002 2.56078 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.36230 2.87145 0.23646 2.81733 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.85196 0.34252 2.58037 1.85442 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.51531 2.37729 1.55109 2.32419 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.36522 2.87432 0.23560 2.82150 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.51533 2.37725 1.55108 2.32411 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.85261 0.34242 2.58064 1.85452 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.24646 0.93197 2.05743 0.98707 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.01205 1.19355 0.99175 1.64914 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.06455 2.35486 0.79733 2.21022 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.33363 3.73767 1.34757 1.46634 0.26236 1.09861 0.40547 20 1.83623 1.94883 2.30136 0.51413 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.06436 3.46840 3.46840 1.46634 0.26236 0.16826 1.86521 21 2.35134 2.86069 0.23975 2.80172 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.35566 2.86493 0.23845 2.80786 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.60257 1.64664 2.31351 0.45522 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.84269 0.34400 2.57654 1.85299 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.33384 3.15543 0.22915 2.72951 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.22741 2.89116 2.65002 2.56078 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.22741 2.89116 2.65002 2.56078 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.22741 2.89116 2.65002 2.56078 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.28984 2.30985 2.79137 0.30367 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.42703 0.31008 2.99175 2.05485 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.58162 1.26785 1.18656 1.57189 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.33384 3.15543 0.22915 2.72951 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.11985 2.73719 0.30019 2.59666 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.51994 2.48425 1.48350 2.35162 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.97155 0.28476 2.67712 2.05714 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.92998 0.29075 2.65976 2.04847 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.43053 1.49130 2.16067 0.55917 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.89135 1.08397 1.08070 1.76303 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.77358 2.22149 1.20532 2.03565 39 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.12830 2.74700 0.29669 2.60962 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.55564 1.80657 2.19295 0.43610 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.04042 0.27544 2.70495 2.07089 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.55751 1.80667 2.19352 0.43575 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.13037 2.74940 0.29584 2.61279 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.04734 0.27454 2.70769 2.07223 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.33384 3.15543 0.22915 2.72951 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.24326 0.54783 1.90870 1.78729 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.55489 1.80653 2.19272 0.43624 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.03876 0.27566 2.70429 2.07057 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.04026 0.27546 2.70489 2.07086 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.55740 1.80667 2.19349 0.43577 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.04432 0.27493 2.70650 2.07165 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.66133 1.62059 2.34993 0.45101 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.42703 0.31008 2.99175 2.05485 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.42703 0.31008 2.99175 2.05485 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.22741 2.89116 2.65002 2.56078 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.33384 3.15543 0.22915 2.72951 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.42703 0.31008 2.99175 2.05485 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //