INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8303 ACC RF03559 DESC mir-8303 microRNA precursor family STATES 178 NODES 39 CLEN 58 W 74 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 05:57:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/d7/1a65b798b42cd091455409cb5b7d9d/RF03559/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.597656 CKSUM 892578051 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 91.80 NC 43.50 EFP7GF -6.2116 0.72679 ECMLC 0.65529 -5.39986 3.58625 1600000 433042 0.002771 ECMGC 0.44816 -15.75333 -2.24657 1600000 170183 0.002350 ECMLI 0.64416 -4.20428 4.52292 1600000 331632 0.003618 ECMGI 0.47931 -11.30691 0.42484 1600000 110701 0.003613 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -6.805 -7.012 -0.059 -5.426 IL 1 1 2 1 4 1 9 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 8 74 93 -8.232 -0.020 -6.549 1.655 -2.107 -1.766 -1.625 D 4 2 3 5 3 0 3 72 92 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 7 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - A - - MR 6 5 3 8 3 1 8 73 92 -8.232 -0.020 -6.549 1.655 -2.107 -1.766 -1.625 D 7 5 3 8 3 0 2 71 91 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 6 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 57 - C - - MR 9 8 3 11 3 1 7 72 91 -8.232 -0.020 -6.549 -1.426 1.527 -2.237 -0.905 D 10 8 3 11 3 0 1 70 90 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 5 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 56 - C - - MR 12 11 3 14 5 1 7 71 90 -6.979 -0.042 -6.794 -7.006 -7.898 -1.426 1.527 -2.237 -0.905 D 13 11 3 14 5 0 1 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 4 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 55 A U - - MP 15 14 3 19 6 2 8 70 89 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 16 14 3 19 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 2 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 54 G C - - MP 21 20 6 25 6 2 8 68 87 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 22 20 6 25 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 53 c g - - MP 27 26 6 31 6 2 7 66 85 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.304 -3.361 -3.234 0.154 1.404 -3.826 2.690 -3.009 -3.274 0.303 -3.682 -1.566 1.196 -3.486 -0.087 -2.227 ML 28 26 6 31 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 52 u g - - MP 33 32 6 37 6 2 7 64 83 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.826 -3.735 -3.589 -0.097 -2.432 -4.058 1.846 -3.179 -3.627 0.143 -3.947 -1.745 1.037 -3.936 2.816 -2.512 ML 34 32 6 37 6 1 2 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 51 g u - - MP 39 38 6 43 6 2 6 62 81 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.453 -2.288 -3.605 1.229 -4.186 -4.916 0.175 -3.652 -3.314 1.578 -3.827 2.887 -0.186 -4.155 -1.765 -2.342 ML 40 38 6 43 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 50 A U - - MP 45 44 6 49 6 2 6 60 79 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 46 44 6 49 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 49 C G - - MP 51 50 6 55 6 2 4 58 77 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 52 50 6 55 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 48 G C - - MP 57 56 6 61 4 2 3 56 75 -6.805 -7.012 -0.059 -5.426 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 58 56 6 61 4 1 1 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 56 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 1 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - G - - - ML 63 62 6 65 3 1 2 53 73 -8.232 -0.020 -6.549 -1.298 -2.472 1.649 -1.857 D 64 62 6 65 3 0 0 52 71 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 47 - G - - MR 66 65 3 68 5 1 1 52 72 -6.979 -0.042 -6.794 -7.006 -7.898 -1.298 -2.472 1.649 -1.857 D 67 65 3 68 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 46 G C - - MP 69 68 3 73 6 2 2 51 71 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 70 68 3 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 45 G C - - MP 75 74 6 79 6 2 2 49 69 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 44 U A - - MP 81 80 6 85 6 2 2 47 67 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 82 80 6 85 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 43 G C - - MP 87 86 6 91 6 2 2 45 65 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 88 86 6 91 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 42 u g - - MP 93 92 6 97 6 2 2 43 63 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.826 -3.735 -3.589 -0.097 -2.432 -4.058 1.846 -3.179 -3.627 0.143 -3.947 -1.745 1.037 -3.936 2.816 -2.512 ML 94 92 6 97 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 41 A U - - MP 99 98 6 103 4 2 2 41 61 -6.805 -7.012 -0.059 -5.426 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 100 98 6 103 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - - - ML 105 104 6 107 3 1 1 39 58 -8.232 -0.020 -6.549 1.655 -2.107 -1.766 -1.625 D 106 104 6 107 3 0 0 38 57 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 40 - A - - MR 108 107 3 110 5 1 1 38 57 -6.979 -0.042 -6.794 -7.006 -7.898 1.655 -2.107 -1.766 -1.625 D 109 107 3 110 5 0 0 36 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 39 U A - - MP 111 110 3 115 6 2 2 37 56 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 112 110 3 115 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 38 G C - - MP 117 116 6 121 6 2 2 35 54 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 118 116 6 121 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 37 A U - - MP 123 122 6 127 6 2 2 33 52 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 124 122 6 127 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 31 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 36 C G - - MP 129 128 6 133 6 2 2 31 50 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 130 128 6 133 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 35 A U - - MP 135 134 6 139 4 2 2 29 48 -6.805 -7.012 -0.059 -5.426 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 136 134 6 139 4 1 1 29 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - A - - - ML 141 140 6 143 5 1 1 26 45 -6.979 -0.042 -6.794 -7.006 -7.898 1.655 -2.107 -1.766 -1.625 D 142 140 6 143 5 0 0 25 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 143 143 3 143 5 1 1 26 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 34 U A - - MP 144 143 3 148 6 2 2 25 44 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 145 143 3 148 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 33 C G - - MP 150 149 6 154 4 2 2 23 42 -6.805 -7.012 -0.059 -5.426 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 151 149 6 154 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 156 155 6 158 3 1 1 20 39 -7.832 -0.023 -6.486 1.655 -2.107 -1.766 -1.625 D 157 155 6 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - U - - - ML 159 158 3 161 3 1 1 19 38 -7.832 -0.023 -6.486 -1.246 -1.285 -1.966 1.542 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - A - - - ML 162 161 3 164 3 1 1 18 36 -7.832 -0.023 -6.486 1.655 -2.107 -1.766 -1.625 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 165 164 3 167 3 1 1 16 35 -7.832 -0.023 -6.486 -1.246 -1.285 -1.966 1.542 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - G - - - ML 168 167 3 170 3 1 1 15 33 -7.832 -0.023 -6.486 -1.298 -2.472 1.649 -1.857 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 171 170 3 173 3 1 1 13 32 -7.832 -0.023 -6.486 1.655 -2.107 -1.766 -1.625 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - C - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.426 1.527 -2.237 -0.905 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8303 ACC RF03559 DESC mir-8303 microRNA precursor family LENG 58 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 05:57:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/d7/1a65b798b42cd091455409cb5b7d9d/RF03559/CM NSEQ 2 EFFN 1.746094 CKSUM 892578051 STATS LOCAL MSV -7.9827 0.72679 STATS LOCAL VITERBI -8.9807 0.72679 STATS LOCAL FORWARD -3.3303 0.72679 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35090 1.42760 1.28148 1.49842 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.21761 2.93049 2.68540 2.60378 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.49306 2.41766 1.58028 2.36237 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.38935 2.91631 0.22686 2.86214 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.45223 0.51914 2.26120 1.53879 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.65823 1.43531 2.40819 0.50765 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.79122 2.58181 0.39543 2.47436 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.49271 2.41851 1.58032 2.36372 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.88954 0.32924 2.62371 1.88127 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.38877 2.91572 0.22703 2.86129 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.37594 3.20461 0.21767 2.77894 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.38696 2.91389 0.22755 2.85865 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.38903 2.91598 0.22695 2.86168 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.64941 1.67223 2.35954 0.43539 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.38977 2.91672 0.22674 2.86275 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.65775 1.43534 2.40800 0.50772 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.49272 2.41848 1.58032 2.36367 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.21761 2.93049 2.68540 2.60378 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.64570 1.67221 2.35816 0.43600 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38911 2.91606 0.22693 2.86179 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.49264 2.41869 1.58033 2.36402 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.89097 0.32902 2.62432 1.88149 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.49267 2.41862 1.58033 2.36390 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.21761 2.93049 2.68540 2.60378 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.64816 1.67222 2.35908 0.43559 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.89025 0.32913 2.62401 1.88138 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.21761 2.93049 2.68540 2.60378 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.32537 2.33897 2.82899 0.29202 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.21761 2.93049 2.68540 2.60378 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.32537 2.33897 2.82899 0.29202 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.37594 3.20461 0.21767 2.77894 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21761 2.93049 2.68540 2.60378 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.47382 0.29507 3.04054 2.09194 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.15209 2.78644 0.28649 2.64189 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.49730 2.53213 1.50895 2.39474 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.59506 1.83996 2.23393 0.41638 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.15642 2.79158 0.28477 2.64860 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.59708 1.84008 2.23456 0.41602 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.08501 0.26484 2.74967 2.09560 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.49474 2.53983 1.50890 2.40529 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.21761 2.93049 2.68540 2.60378 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.59430 1.83991 2.23369 0.41652 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.93605 2.58033 0.37109 2.40801 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.08044 0.26541 2.74783 2.09472 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.49518 2.53850 1.50891 2.40346 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.08492 0.26486 2.74963 2.09559 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.08800 0.26447 2.75086 2.09618 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.37594 3.20461 0.21767 2.77894 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.07562 0.26601 2.74590 2.09378 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.15524 2.79019 0.28524 2.64677 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.59439 1.83992 2.23372 0.41650 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.69300 1.65222 2.38724 0.43261 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.93644 2.58081 0.37087 2.40863 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.10788 2.42334 0.74663 2.23349 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.08530 0.26481 2.74979 2.09566 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.60036 1.84028 2.23559 0.41544 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.47382 0.29507 3.04054 2.09194 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.47382 0.29507 3.04054 2.09194 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.21761 2.93049 2.68540 2.60378 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //