INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-15_2 ACC RF03549 DESC mir-15_2 microRNA precursor family STATES 172 NODES 39 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 1 15:54:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03549/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.769531 CKSUM 3787804143 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 90.10 NC 55.30 EFP7GF -5.3429 0.72836 ECMLC 0.63623 -5.69581 3.48429 1600000 412800 0.002907 ECMGC 0.45344 -16.16935 -2.31417 1600000 214045 0.001869 ECMLI 0.62956 -4.27373 4.44996 1600000 291309 0.004119 ECMGI 0.49838 -11.29907 0.32879 1600000 131468 0.003043 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 91 -6.803 -8.048 -0.084 -4.502 IL 1 1 2 1 4 1 4 73 93 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 56 - C - - MR 3 2 3 5 3 1 7 72 91 -8.297 -0.019 -6.614 -1.591 1.581 -2.410 -1.036 D 4 2 3 5 3 0 1 70 90 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 5 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 55 - A - - MR 6 5 3 8 5 1 7 71 90 -7.039 -0.041 -6.855 -7.067 -7.959 1.691 -2.247 -1.891 -1.777 D 7 5 3 8 5 0 0 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 4 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 54 A U - - MP 9 8 3 13 6 2 8 70 89 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 10 8 3 13 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 53 g u - - MP 15 14 6 19 6 2 7 68 87 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.539 -2.338 -3.699 1.180 -4.352 -5.077 0.028 -3.733 -3.382 1.462 -3.899 2.997 -0.332 -4.301 -1.914 -2.416 ML 16 14 6 19 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 52 C G - - MP 21 20 6 25 6 2 7 66 85 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 22 20 6 25 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 51 A U - - MP 27 26 6 31 6 2 6 64 83 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 28 26 6 31 6 1 1 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 50 G C - - MP 33 32 6 37 6 2 4 62 81 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 34 32 6 37 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 49 C G - - MP 39 38 6 43 4 2 3 59 79 -6.881 -7.088 -0.056 -5.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 40 38 6 43 4 1 1 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 1 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 45 44 6 47 3 1 2 57 76 -8.297 -0.019 -6.614 1.691 -2.247 -1.891 -1.777 D 46 44 6 47 3 0 0 56 75 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 48 - G - - MR 48 47 3 50 5 1 1 56 75 -7.039 -0.041 -6.855 -7.067 -7.959 -1.448 -2.647 1.691 -2.033 D 49 47 3 50 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 47 C G - - MP 51 50 3 55 6 2 2 55 74 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 52 50 3 55 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 46 g u - - MP 57 56 6 61 6 2 2 53 72 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.539 -2.338 -3.699 1.180 -4.352 -5.077 0.028 -3.733 -3.382 1.462 -3.899 2.997 -0.332 -4.301 -1.914 -2.416 ML 58 56 6 61 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 45 C G - - MP 63 62 6 67 4 2 2 51 70 -6.881 -7.088 -0.056 -5.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 64 62 6 67 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - C - - - ML 69 68 6 71 3 1 1 49 68 -8.297 -0.019 -6.614 -1.591 1.581 -2.410 -1.036 D 70 68 6 71 3 0 0 47 66 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 44 - C - - MR 72 71 3 74 5 1 1 48 67 -7.039 -0.041 -6.855 -7.067 -7.959 -1.591 1.581 -2.410 -1.036 D 73 71 3 74 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 43 A U - - MP 75 74 3 79 6 2 2 47 66 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 76 74 3 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 42 U A - - MP 81 80 6 85 6 2 2 45 64 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.063 -3.884 -3.915 -0.188 -2.885 -4.491 1.441 -3.571 -3.921 0.085 -4.301 -1.787 3.264 -4.219 -0.564 -2.758 ML 82 80 6 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 41 G C - - MP 87 86 6 91 6 2 2 43 62 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 40 G C - - MP 93 92 6 97 6 2 2 41 60 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 94 92 6 97 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 39 U A - - MP 99 98 6 103 6 2 2 39 58 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.063 -3.884 -3.915 -0.188 -2.885 -4.491 1.441 -3.571 -3.921 0.085 -4.301 -1.787 3.264 -4.219 -0.564 -2.758 ML 100 98 6 103 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 38 U A - - MP 105 104 6 109 6 2 2 37 56 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.063 -3.884 -3.915 -0.188 -2.885 -4.491 1.441 -3.571 -3.921 0.085 -4.301 -1.787 3.264 -4.219 -0.564 -2.758 ML 106 104 6 109 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 37 U A - - MP 111 110 6 115 6 2 2 35 54 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.063 -3.884 -3.915 -0.188 -2.885 -4.491 1.441 -3.571 -3.921 0.085 -4.301 -1.787 3.264 -4.219 -0.564 -2.758 ML 112 110 6 115 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 36 G C - - MP 117 116 6 121 6 2 2 32 52 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 118 116 6 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 35 u a - - MP 123 122 6 127 6 2 2 30 50 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.370 -3.347 -3.309 0.259 -2.403 -3.926 1.866 -3.072 -3.334 0.490 -3.752 -1.432 2.281 -3.547 1.759 -2.257 ML 124 122 6 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 34 A U - - MP 129 128 6 133 4 2 2 28 48 -6.881 -7.088 -0.056 -5.502 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 130 128 6 133 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 135 134 6 137 3 1 1 26 45 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 136 134 6 137 3 0 0 25 44 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 138 137 3 140 3 1 1 25 44 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 139 137 3 140 3 0 0 24 43 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - G - - - ML 141 140 3 143 3 1 1 24 42 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 142 140 3 143 3 0 0 23 41 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - A - - - ML 144 143 3 146 3 1 1 22 41 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 145 143 3 146 3 0 0 21 40 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - U - - - ML 147 146 3 149 3 1 1 21 40 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 148 146 3 149 3 0 0 20 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - A - - - ML 150 149 3 152 3 1 1 20 39 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 151 149 3 152 3 0 0 19 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - a - - - ML 153 152 3 155 3 1 1 19 37 -7.902 -0.022 -6.556 0.610 0.235 -1.071 -0.285 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - G - - - ML 156 155 3 158 3 1 1 18 36 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 159 158 3 161 3 1 1 16 35 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 162 161 3 164 3 1 1 15 33 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 165 164 3 167 3 1 1 13 32 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - A - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 1.691 -2.247 -1.891 -1.777 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-15_2 ACC RF03549 DESC mir-15_2 microRNA precursor family LENG 56 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 1 15:54:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03549/CM NSEQ 2 EFFN 1.761719 CKSUM 3787804143 STATS LOCAL MSV -8.2246 0.72836 STATS LOCAL VITERBI -9.0132 0.72836 STATS LOCAL FORWARD -3.3589 0.72836 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39759 1.47898 1.21036 1.48348 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.48906 2.42470 1.58667 2.36777 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.79333 2.58874 0.39343 2.47999 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.89618 0.32664 2.63257 1.88698 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.48795 2.42745 1.58683 2.37215 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.39425 2.92508 0.22511 2.87044 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.89723 0.32648 2.63301 1.88714 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.21551 2.93915 2.69319 2.61325 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.89397 0.32698 2.63163 1.88663 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.79425 2.59026 0.39277 2.48213 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.89914 0.32619 2.63382 1.88744 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.48415 0.29187 3.05129 2.10013 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.48818 2.42687 1.58680 2.37122 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.65713 1.67798 2.36879 0.43154 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.39532 2.92616 0.22481 2.87199 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.39530 2.92614 0.22481 2.87198 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.65757 1.67798 2.36895 0.43147 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.65713 1.67798 2.36879 0.43154 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.65669 1.67797 2.36862 0.43162 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.39417 2.92499 0.22514 2.87031 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.34196 1.38308 2.09353 0.63525 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.48803 2.42725 1.58682 2.37182 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.38519 3.21540 0.21523 2.78978 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.21551 2.93915 2.69319 2.61325 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38519 3.21540 0.21523 2.78978 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.21551 2.93915 2.69319 2.61325 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.33322 2.34541 2.83728 0.28952 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.21551 2.93915 2.69319 2.61325 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.96399 1.22390 2.12703 1.58298 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.38519 3.21540 0.21523 2.78978 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.38519 3.21540 0.21523 2.78978 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.33322 2.34541 2.83728 0.28952 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.38519 3.21540 0.21523 2.78978 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.21551 2.93915 2.69319 2.61325 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.60126 1.84724 2.24225 0.41260 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.11628 2.25671 0.80427 2.11695 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.08432 0.26387 2.75527 2.09903 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.49112 2.54671 1.51468 2.40969 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.49103 2.54698 1.51468 2.41006 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.49093 2.54731 1.51468 2.41051 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.08945 0.26324 2.75733 2.10002 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.09154 0.26298 2.75818 2.10043 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.49043 2.54882 1.51467 2.41257 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.60923 1.84775 2.24476 0.41119 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.48415 0.29187 3.05129 2.10013 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.16308 2.80191 0.28205 2.65786 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.70487 1.65922 2.39728 0.42791 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.16476 2.80391 0.28139 2.66047 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.38519 3.21540 0.21523 2.78978 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.16119 2.79965 0.28279 2.65492 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.08595 0.26367 2.75592 2.09934 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.60364 1.84739 2.24300 0.41217 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.16236 2.80105 0.28233 2.65674 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.70300 1.65922 2.39659 0.42820 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.60696 1.84760 2.24405 0.41159 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.21551 2.93915 2.69319 2.61325 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.48415 0.29187 3.05129 2.10013 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //