INFERNAL1/a [1.1.4 | Dec 2020] NAME Flavi_ISFV_repeat_Ra ACC RF03544 DESC Insect-Specific Flavivirus 3' UTR repeats Ra STATES 183 NODES 49 CLEN 58 W 101 ALPH RNA RF no CONS yes MAP yes DATE Fri Sep 11 15:45:49 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/viruses/flaviviruses/searches/nancy_commit/i_flavi_ra/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 30 EFFN 7.899170 CKSUM 3720150185 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.80 NC 39.00 EFP7GF -17.1502 0.71911 ECMLC 0.54142 -8.10901 3.11013 1600000 521436 0.002301 ECMGC 0.38723 -20.90929 -6.45019 1600000 108066 0.003701 ECMLI 0.53535 -6.78572 3.72268 1600000 332951 0.003604 ECMGI 0.41452 -16.20569 -3.24505 1600000 86159 0.004643 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 101 155 -8.378 -8.586 -0.019 -7.000 IL 1 1 2 1 4 1 22 103 157 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 103 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 101 155 -9.328 -0.008 -7.982 -0.247 -1.228 1.138 -0.919 D 4 2 3 5 3 0 16 99 153 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 102 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 21 100 154 -9.328 -0.008 -7.982 -0.721 1.183 -1.831 -0.247 D 7 5 3 8 3 0 15 98 152 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 101 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 20 99 153 -9.328 -0.008 -7.982 -0.924 1.285 -1.527 -0.538 D 10 8 3 11 3 0 14 97 151 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 100 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 19 98 152 -9.660 -0.008 -7.978 -0.293 1.453 -3.070 -1.611 D 13 11 3 14 3 0 14 97 150 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 18 99 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 65 - A - - MR 15 14 3 17 3 1 18 97 151 -9.660 -0.008 -7.978 1.734 -2.884 -1.395 -2.657 D 16 14 3 17 3 0 12 95 149 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 98 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 64 - C - - MR 18 17 3 20 3 1 17 96 150 -9.660 -0.008 -7.978 -2.379 1.820 -3.661 -2.341 D 19 17 3 20 3 0 11 94 148 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 97 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 63 - C - - MR 21 20 3 23 3 1 16 95 149 -9.660 -0.008 -7.978 -3.127 1.835 -2.845 -2.480 D 22 20 3 23 3 0 10 93 147 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 96 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - C - - MR 24 23 3 26 3 1 16 94 148 -9.660 -0.008 -7.978 -3.414 1.886 -3.919 -2.796 D 25 23 3 26 3 0 9 92 146 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 95 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - C - - MR 27 26 3 29 5 1 15 93 147 -8.341 -0.016 -8.156 -8.368 -9.260 -3.414 1.886 -3.919 -2.796 D 28 26 3 29 5 0 8 92 145 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 12 93 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 60 g c - - MP 30 29 3 34 6 2 14 92 146 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -0.809 -1.409 -2.922 0.992 -2.870 -3.729 2.160 -3.209 -3.018 2.207 -3.539 -0.805 0.856 -3.017 -0.819 -2.056 ML 31 29 3 34 6 1 10 91 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 9 90 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 6 87 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 11 92 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 11 92 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 59 C G - - MP 36 35 6 40 6 2 12 90 144 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -7.430 -7.574 -6.546 -3.798 -4.912 -6.583 3.937 -6.118 -6.908 -3.766 -6.616 -5.760 -1.911 -7.331 -2.920 -5.711 ML 37 35 6 40 6 1 9 89 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 8 88 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 5 86 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 10 90 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 10 90 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 58 G C - - MP 42 41 6 46 4 2 10 88 142 -8.378 -8.586 -0.019 -7.000 -7.144 -4.320 -8.032 -1.564 -8.441 -5.616 -3.205 -8.076 -5.671 3.914 -5.904 -2.171 -3.568 -5.953 -5.465 -6.881 ML 43 41 6 46 4 1 8 88 141 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 6 87 140 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 5 85 139 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 9 89 142 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 9 88 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - C - - - ML 48 47 6 50 3 1 8 86 140 -9.328 -0.008 -7.982 -3.111 1.728 -3.999 -0.974 D 49 47 6 50 3 0 5 84 138 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 87 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - A - - - ML 51 50 3 53 3 1 7 85 139 -9.328 -0.008 -7.982 1.871 -3.585 -3.511 -2.541 D 52 50 3 53 3 0 4 83 137 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 7 86 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - A - - - ML 54 53 3 56 3 1 6 84 138 -9.328 -0.008 -7.982 1.954 -4.874 -4.327 -4.589 D 55 53 3 56 3 0 4 83 136 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 6 85 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - G - - - ML 57 56 3 59 3 1 5 83 137 -9.328 -0.008 -7.982 -3.164 -4.347 1.881 -2.674 D 58 56 3 59 3 0 4 82 135 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 5 84 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - G - - - ML 60 59 3 62 2 1 4 82 136 -9.888 -0.002 -3.928 -5.416 1.953 -4.663 D 61 59 3 62 2 0 3 81 135 -8.445 -0.004 IL 62 62 3 62 2 1 5 83 136 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 63 62 3 64 129 0 3 81 135 [ BEGL 19 ] - - - - - - S 64 63 1 65 4 0 0 64 118 -0.024 -7.726 -7.133 -7.773 [ MATP 20 ] 13 40 A U - - MP 65 64 1 69 6 2 2 65 118 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.926 -3.584 -4.977 3.088 -6.363 -6.360 -1.646 -5.242 -4.825 2.576 -5.346 -1.011 -1.839 -5.424 -3.603 -3.730 ML 66 64 1 69 6 1 1 63 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 62 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 58 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 64 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 64 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 39 a u - - MP 71 70 6 75 6 2 2 63 116 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.896 -3.539 -4.926 2.955 -6.272 -6.143 -1.523 -5.232 -4.813 2.730 -5.307 -0.991 -1.728 -5.272 -3.490 -3.702 ML 72 70 6 75 6 1 1 61 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 60 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 57 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 62 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 62 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 38 G C - - MP 77 76 6 81 6 2 2 61 114 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.675 -3.250 -4.593 1.778 -5.788 -5.217 -0.902 -5.133 -4.716 3.247 -5.057 0.582 -1.147 -4.533 -2.904 -3.491 ML 78 76 6 81 6 1 1 59 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 58 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 55 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 60 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 60 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 37 G C - - MP 83 82 6 87 6 2 2 59 112 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.630 -3.154 -4.505 0.891 -5.584 -4.866 -0.672 -5.151 -4.702 3.461 -4.961 0.047 -0.939 -1.498 -2.687 -3.463 ML 84 82 6 87 6 1 1 57 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 56 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 53 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 58 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 58 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 36 a u - - MP 89 88 6 93 6 2 2 57 110 -9.827 -9.766 -0.041 -8.543 -5.544 -9.218 -0.824 -1.437 -2.352 2.206 -2.399 -3.180 1.084 -2.721 -1.391 1.739 -2.993 -0.363 0.745 -2.467 -0.195 -1.590 ML 90 88 6 93 6 1 1 55 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 54 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 51 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 56 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 56 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 35 c g - - MP 95 94 6 99 4 2 2 55 108 -8.333 -8.540 -0.088 -4.233 -1.910 -2.112 -2.104 1.178 -1.290 -2.955 2.094 -1.534 -0.536 1.313 -1.750 -0.768 1.016 -2.245 0.229 -1.359 ML 96 94 6 99 4 1 1 54 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 51 105 -5.317 -4.346 -2.213 -0.494 -0.135 -0.469 -0.749 0.825 D 98 94 6 99 4 0 0 50 104 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 55 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 54 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 101 100 6 103 3 1 1 53 106 -9.220 -0.009 -7.874 1.009 -1.874 0.146 -0.718 D 102 100 6 103 3 0 0 46 99 -7.620 -3.133 -0.183 IL 103 103 3 103 3 1 1 53 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - u - - - ML 104 103 3 106 3 1 1 52 105 -1.358 -1.109 -2.771 -0.103 -0.672 -0.384 0.744 D 105 103 3 106 3 0 0 38 92 -7.620 -3.133 -0.183 IL 106 106 3 106 3 1 1 53 107 -0.498 -2.305 -3.481 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - u - - - ML 107 106 3 109 3 1 1 20 38 -0.752 -1.837 -2.984 -0.514 -0.318 -0.913 0.976 D 108 106 3 109 3 0 0 17 35 -9.350 -1.964 -0.430 IL 109 109 3 109 3 1 1 19 38 -3.182 -0.196 -5.882 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - c - - - ML 110 109 3 112 3 1 1 18 36 -8.744 -0.012 -7.398 -0.020 0.118 0.015 -0.123 D 111 109 3 112 3 0 0 16 35 -9.333 -2.016 -0.413 IL 112 112 3 112 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - c - - - ML 113 112 3 115 3 1 1 17 35 -8.907 -0.011 -7.561 0.021 0.448 -0.566 -0.081 D 114 112 3 115 3 0 0 15 33 -8.988 -4.501 -0.068 IL 115 115 3 115 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - a - - - ML 116 115 3 118 3 1 1 15 34 -8.907 -0.011 -7.561 0.771 -0.929 -0.358 -0.017 D 117 115 3 118 3 0 0 14 32 -8.988 -2.284 -0.335 IL 118 118 3 118 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 119 118 3 121 3 1 1 14 32 -8.996 -0.658 -1.457 -0.180 -0.021 -0.912 0.678 D 120 118 3 121 3 0 0 13 32 -8.735 -0.179 -3.126 IL 121 121 3 121 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - c - - - ML 122 121 3 124 3 1 1 12 31 -8.844 -0.134 -3.530 -0.552 0.545 -0.619 0.273 D 123 121 3 124 3 0 0 11 30 -9.136 -3.003 -0.195 IL 124 124 3 124 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - u - - - ML 125 124 3 127 2 1 1 1 1 * 0.000 -0.473 0.392 -1.217 0.620 D 126 124 3 127 2 0 0 0 0 * 0.000 IL 127 127 3 127 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 128 127 3 -1 0 0 0 0 0 [ BEGR 36 ] - - - - - - S 129 63 1 130 5 0 0 30 48 -8.341 -0.016 -8.156 -8.368 -9.260 IL 130 130 2 130 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 41 57 G C - - MP 131 130 2 135 6 2 2 30 48 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -5.991 -3.960 -6.182 0.655 -7.262 -5.572 -2.251 -6.566 -5.343 3.749 -5.640 -1.666 -2.522 -5.489 -4.340 -5.039 ML 132 130 2 135 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 2 135 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 2 135 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 56 G C - - MP 137 136 6 141 6 2 2 28 46 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.794 -3.377 -4.758 1.198 -6.043 -5.546 -1.184 -5.212 -4.774 3.096 -5.173 1.930 -1.408 -4.822 -3.176 -3.609 ML 138 136 6 141 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 55 G C - - MP 143 142 6 147 6 2 2 26 44 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -7.144 -4.320 -8.032 -1.564 -8.441 -5.616 -3.205 -8.076 -5.671 3.914 -5.904 -2.171 -3.568 -5.953 -5.465 -6.881 ML 144 142 6 147 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 54 u a - - MP 149 148 6 153 6 2 2 24 42 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -3.335 -3.348 -3.446 1.675 -2.904 -4.266 1.507 -3.430 -3.445 0.326 -3.979 -1.474 2.627 -3.608 -0.176 -1.049 ML 150 148 6 153 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 53 G C - - MP 155 154 6 159 6 2 2 22 40 -9.827 -9.766 -0.013 -8.543 -8.823 -9.218 -4.453 0.294 -4.320 0.741 -5.372 -4.767 -0.513 -4.970 -4.586 3.341 -4.851 -0.242 -0.777 -1.738 -2.512 -3.288 ML 156 154 6 159 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 52 u a - - MP 161 160 6 165 4 2 2 20 38 -8.378 -8.586 -0.019 -7.000 -3.810 -3.947 -3.850 -0.628 1.708 -4.539 0.833 -3.798 0.306 -0.625 -4.363 -2.322 2.678 -4.060 0.332 -2.929 ML 162 160 6 165 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 167 166 6 169 3 1 1 17 35 -9.328 -0.008 -7.982 -2.191 -1.782 -1.692 1.669 D 168 166 6 169 3 0 0 17 35 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 170 169 3 172 3 1 1 15 34 -9.328 -0.008 -7.982 0.062 -3.188 1.430 -2.720 D 171 169 3 172 3 0 0 16 34 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 173 172 3 175 3 1 1 14 32 -9.328 -0.008 -7.982 1.954 -4.874 -4.327 -4.589 D 174 172 3 175 3 0 0 15 33 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 176 175 3 178 3 1 1 12 31 -9.328 -0.008 -7.982 -4.497 1.942 -5.101 -3.570 D 177 175 3 178 3 0 0 13 32 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - G - - - ML 179 178 3 181 2 1 1 1 1 * 0.000 -1.168 -1.988 1.546 -1.383 D 180 178 3 181 2 0 0 0 0 * 0.000 IL 181 181 3 181 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 182 181 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Flavi_ISFV_repeat_Ra ACC RF03544 DESC Insect-Specific Flavivirus 3' UTR repeats Ra LENG 58 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Sep 11 15:45:49 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 30 EFFN 16.783447 CKSUM 3720150185 STATS LOCAL MSV -7.5968 0.71911 STATS LOCAL VITERBI -8.4003 0.71911 STATS LOCAL FORWARD -3.9426 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55510 1.08408 1.26290 1.78507 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 0.00000 * 1 1.63360 2.35617 0.49877 2.27582 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 2 2.02996 0.46138 2.90802 1.69467 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 3 2.22284 0.39169 2.55107 1.98203 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 4 1.58159 0.28634 4.52477 3.42633 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 5 1.69494 1.08627 1.01560 2.14788 5 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 6 5.84855 0.01521 5.85256 4.67402 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 7 4.22283 5.31737 0.02472 5.32877 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 8 4.37851 0.14375 4.93535 2.17008 8 C - - , 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 9 0.05834 4.56989 4.58355 3.32171 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 10 0.01311 5.68517 5.26439 5.41349 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 11 4.38826 5.28061 0.05499 3.32440 11 G - - , 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 12 4.84268 5.98448 0.01524 5.35560 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 13 0.50218 4.81847 0.97906 4.50561 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 14 0.58374 4.71678 0.86450 4.42431 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 15 1.44871 3.95585 0.32434 3.77319 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 16 2.29870 3.79412 0.19385 2.93127 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 17 0.81561 2.13337 1.18500 2.01406 17 a - - < 1.38629 1.38629 1.38629 1.38629 0.04415 5.25346 3.27117 1.46634 0.26236 1.09861 0.40547 18 1.78845 1.00464 1.30851 1.62771 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.06068 5.22018 2.92873 1.46634 0.26236 2.22563 0.11429 19 0.59818 3.33065 1.22098 2.12460 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01142 5.17092 5.17092 1.46634 0.26236 2.89859 0.05668 20 1.53919 1.94958 1.62959 0.80497 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.90599 0.83585 1.81801 1.28131 0.32528 2.89859 0.05668 21 1.94835 1.62391 2.08621 0.62323 27 U - - _ 1.38629 1.38629 1.38629 1.38629 2.00480 0.58276 1.18105 0.02395 3.74374 0.89831 0.52299 22 1.48272 1.19943 1.30249 1.61064 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01659 4.80022 4.80022 1.46634 0.26236 1.41394 0.27863 23 1.42558 0.95130 1.79542 1.57343 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01458 4.92880 4.92880 1.46634 0.26236 4.02557 0.01801 24 0.77780 2.19564 1.63531 1.45070 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01458 4.92880 4.92880 1.46634 0.26236 1.63129 0.21775 25 1.59825 1.36422 2.10503 0.86672 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.53825 4.99839 0.89286 1.46634 0.26236 0.04440 3.13663 26 2.04990 0.87443 1.82330 1.22874 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.11349 4.87940 2.30570 1.46634 0.26236 2.21897 0.11510 27 1.90976 1.00552 2.42059 0.92342 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01610 4.83032 4.83032 1.46634 0.26236 0.02942 3.54059 28 1.65178 1.66110 0.90287 1.54666 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 29 1.93779 1.32511 1.83087 0.84413 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 30 3.89592 0.23083 3.61031 1.84040 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 31 4.00858 0.46664 3.75813 1.10441 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 32 4.59321 0.89903 4.48057 0.55934 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 33 4.64635 1.01792 4.55875 0.48032 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 34 2.29528 5.07788 0.12072 4.99843 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 35 1.99345 4.31876 0.18172 4.09686 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 36 4.22813 5.32697 0.02452 5.34243 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 37 1.41864 1.99201 2.93038 0.56535 44 U - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 38 1.71381 3.68421 0.29667 2.96777 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 39 4.68095 1.13004 2.19400 0.58655 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 40 3.61626 2.92669 2.58769 0.16919 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 41 1.32517 4.35934 0.35034 4.07418 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 42 0.01311 5.68517 5.26439 5.41349 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 43 5.25890 0.01879 5.58513 4.63986 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 44 2.44222 2.95848 0.24954 2.50130 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 45 0.15777 4.72238 2.07623 4.45170 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 46 3.79343 0.18654 3.49986 2.14172 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 47 0.70431 3.10924 1.72065 1.26597 54 a - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 48 5.39910 0.03066 5.24911 3.89097 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 49 4.33010 0.60307 4.11808 0.85938 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 50 5.15218 0.12938 4.95062 2.22109 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 51 5.38448 0.03083 5.24062 3.88845 58 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 52 4.89114 6.01186 0.01308 5.79927 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 53 1.97933 1.00938 1.03597 1.94833 60 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 54 4.23959 0.04678 4.43827 3.93887 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 55 4.23959 0.04678 4.43827 3.93887 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 56 4.14955 0.07451 3.38679 3.80711 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 57 3.22056 0.08077 4.35595 3.69569 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.01051 5.25346 5.25346 1.46634 0.26236 1.09861 0.40547 58 0.14402 3.83411 2.41615 3.76155 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.00527 5.24821 * 1.46634 0.26236 0.00000 * //