INFERNAL1/a [1.1.4 | Dec 2020] NAME Flavi_ISFV_repeat_Rb ACC RF03543 DESC Insect-Specific Flavivirus 3' UTR repeats Rb STATES 145 NODES 35 CLEN 47 W 73 ALPH RNA RF no CONS yes MAP yes DATE Fri Sep 11 15:45:45 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/viruses/flaviviruses/searches/nancy_commit/i_flavi_rb/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 5.784424 CKSUM 4150418770 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.00 NC 37.90 EFP7GF -14.5178 0.71953 ECMLC 0.67303 -5.73662 3.42381 1600000 571102 0.002101 ECMGC 0.37612 -20.87065 -4.70024 1600000 175161 0.002284 ECMLI 0.63859 -4.95306 4.22897 1600000 422355 0.002841 ECMGI 0.39421 -16.70736 -2.20203 1600000 121733 0.003286 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 105 -7.868 -9.114 -0.040 -5.567 IL 1 1 2 1 4 1 9 74 106 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 75 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 53 - A - - MR 3 2 3 5 3 1 13 73 105 -9.318 -0.010 -7.636 1.496 -2.705 -0.279 -2.304 D 4 2 3 5 3 0 6 71 104 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 10 74 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 52 - C - - MR 6 5 3 8 5 1 12 72 104 -8.010 -0.021 -7.825 -8.037 -8.929 -3.962 1.916 -4.655 -3.042 D 7 5 3 8 5 0 5 71 103 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 8 72 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 51 C G - - MP 9 8 3 13 6 2 12 71 103 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -5.600 -5.771 -5.052 -1.977 2.482 -5.280 3.035 -4.380 -5.129 -1.902 -5.307 -3.982 -0.139 -5.516 -1.190 -3.940 ML 10 8 3 13 6 1 7 70 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 7 69 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 3 67 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 71 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 8 70 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 50 C G - - MP 15 14 6 19 6 2 10 69 101 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -6.754 -6.847 -6.025 -3.036 -4.432 -6.148 3.899 -5.500 -6.259 -2.979 -6.163 -4.947 -1.263 -6.679 -2.309 -5.062 ML 16 14 6 19 6 1 6 68 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 68 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 65 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 69 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 68 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 49 C G - - MP 21 20 6 25 4 2 9 67 99 -7.868 -9.114 -0.040 -5.567 -6.754 -6.847 -6.025 -3.036 -4.432 -6.148 3.899 -5.500 -6.259 -2.979 -6.163 -4.947 -1.263 -6.679 -2.309 -5.062 ML 22 20 6 25 4 1 5 66 98 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 6 66 98 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 2 64 96 -12.737 -14.007 -2.036 -0.404 IL 25 25 5 25 4 1 6 66 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 6 67 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - A - - MR 27 26 6 29 3 1 8 65 97 -9.318 -0.010 -7.636 1.932 -4.305 -3.782 -4.018 D 28 26 6 29 3 0 2 63 95 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 66 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - A - - MR 30 29 3 32 3 1 8 64 96 -9.318 -0.010 -7.636 1.157 -2.588 0.455 -2.105 D 31 29 3 32 3 0 1 62 95 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 6 65 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - a - - MR 33 32 3 35 5 1 7 63 95 -8.010 -0.021 -7.825 -8.037 -8.929 0.642 -0.548 -0.687 0.182 D 34 32 3 35 5 0 1 62 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 4 63 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 4 45 C G - - MP 36 35 3 40 6 2 8 62 94 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -6.754 -6.847 -6.025 -3.036 -4.432 -6.148 3.899 -5.500 -6.259 -2.979 -6.163 -4.947 -1.263 -6.679 -2.309 -5.062 ML 37 35 3 40 6 1 3 61 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 3 60 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 57 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 4 62 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 4 61 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 44 A U - - MP 42 41 6 46 6 2 6 60 92 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -5.694 -4.426 -5.313 3.869 -6.886 -8.204 -2.495 -5.241 -5.454 -1.005 -6.074 -1.714 -2.855 -6.952 -4.407 -4.251 ML 43 41 6 46 6 1 2 59 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 2 58 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 56 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 3 60 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 3 59 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 43 G C - - MP 48 47 6 52 6 2 4 58 90 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -4.919 -3.398 -4.987 0.113 -6.296 -5.658 -1.488 -5.301 -4.699 3.171 -5.140 2.255 -1.702 -5.086 -3.483 -3.774 ML 49 47 6 52 6 1 2 57 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 2 57 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 55 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 3 58 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 3 57 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 42 U G - - MP 54 53 6 58 4 2 2 56 88 -8.015 -8.222 -0.266 -2.636 -5.756 -5.741 -5.162 -1.992 -3.608 -5.396 0.685 -4.473 -5.223 -2.030 -5.390 -3.742 -0.316 -5.707 3.664 -4.044 ML 55 53 6 58 4 1 1 56 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 55 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 54 86 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 2 57 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 2 56 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - C - - - ML 60 59 6 62 3 1 2 54 86 -9.100 -0.011 -7.417 -1.704 1.279 -2.617 0.142 D 61 59 6 62 3 0 0 53 85 -7.027 -0.235 -2.810 IL 62 62 3 62 3 1 1 55 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 41 - U - - MR 63 62 3 65 5 1 2 53 85 -8.010 -0.021 -7.825 -8.037 -8.929 -1.995 -0.324 -2.780 1.488 D 64 62 3 65 5 0 0 52 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 54 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 40 C G - - MP 66 65 3 70 6 2 3 52 84 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -6.285 -6.393 -5.706 -2.553 -0.568 -5.909 3.803 -5.172 -5.873 -2.444 -5.904 -4.495 -0.870 -6.244 -1.988 -4.679 ML 67 65 3 70 6 1 1 51 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 51 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 49 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 52 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 52 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 39 C G - - MP 72 71 6 76 4 2 2 50 82 -8.015 -8.222 -0.737 -1.348 -4.434 -4.564 -4.297 -1.073 0.666 0.926 3.226 -3.995 -4.348 -1.022 -4.712 -2.859 0.172 -4.588 -1.025 -3.296 ML 73 71 6 76 4 1 1 50 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 50 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 48 81 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 51 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 51 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - c - - - ML 78 77 6 80 3 1 1 49 81 -2.097 -0.399 -6.966 -0.221 0.597 -0.229 -0.366 D 79 77 6 80 3 0 0 47 79 -9.153 -0.132 -3.544 IL 80 80 3 80 3 1 1 49 81 -2.191 -0.420 -4.891 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - u - - - ML 81 80 3 83 3 1 1 47 79 -8.976 -0.010 -7.630 -0.407 0.301 -1.792 0.787 D 82 80 3 83 3 0 0 46 78 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 48 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 84 83 3 86 3 1 1 46 78 -9.318 -0.010 -7.636 1.932 -4.305 -3.782 -4.018 D 85 83 3 86 3 0 0 45 77 -5.620 -0.734 -1.403 IL 86 86 3 86 3 1 1 47 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 38 - U - - MR 87 86 3 89 3 1 1 45 77 -9.318 -0.010 -7.636 0.128 -1.581 -1.925 1.208 D 88 86 3 89 3 0 0 43 75 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 46 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 37 - G - - MR 90 89 3 92 3 1 1 44 76 -9.318 -0.010 -7.636 -0.837 -3.233 1.670 -2.726 D 91 89 3 92 3 0 0 42 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 45 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 36 - C - - MR 93 92 3 95 3 1 1 43 75 -9.318 -0.010 -7.636 -3.962 1.916 -4.655 -3.042 D 94 92 3 95 3 0 0 42 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 44 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 35 - C - - MR 96 95 3 98 5 1 1 42 74 -8.010 -0.021 -7.825 -8.037 -8.929 -3.962 1.916 -4.655 -3.042 D 97 95 3 98 5 0 0 41 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 43 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 34 G C - - MP 99 98 3 103 6 2 2 41 73 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -6.120 -3.862 -6.443 -0.813 -7.409 -5.349 -2.330 -6.789 -5.239 3.818 -5.511 -0.538 -2.613 -5.413 -4.464 -5.307 ML 100 98 3 103 6 1 1 40 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 39 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 36 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 41 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 33 G C - - MP 105 104 6 109 6 2 2 39 71 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -5.053 -3.387 -5.062 0.583 -6.188 -5.164 -1.269 -5.553 -4.812 3.586 -5.130 0.312 -1.524 -4.763 -3.302 -3.951 ML 106 104 6 109 6 1 1 38 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 34 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 39 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 32 U A - - MP 111 110 6 115 6 2 2 37 69 -9.611 -9.550 -0.015 -8.327 -8.607 -9.002 -5.706 -5.757 -5.293 -1.927 -3.848 -5.621 0.493 -4.689 -5.329 -1.810 -5.580 -3.798 3.632 -5.693 0.326 -4.021 ML 112 110 6 115 6 1 1 36 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 35 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 33 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 37 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 37 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 31 C G - - MP 117 116 6 121 6 2 2 35 67 -9.611 -9.550 -0.057 -4.982 -8.607 -9.002 -5.298 -5.317 -4.893 -1.394 -3.431 -5.236 3.476 -4.270 -4.922 -1.248 -5.176 -3.272 1.621 -5.291 -1.086 -3.715 ML 118 116 6 121 6 1 1 34 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 33 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 31 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 35 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 35 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 30 a u - - MP 123 122 6 127 4 2 2 33 65 -7.940 -2.222 -0.375 -6.561 -4.135 -3.794 -4.085 2.986 -3.357 -4.793 1.791 -3.914 -4.098 0.280 -4.531 -1.624 0.947 -4.331 -1.040 -2.991 ML 124 122 6 127 4 1 1 33 65 -4.244 -1.589 -0.993 -3.156 -0.224 -0.518 -0.848 0.918 MR 125 122 6 127 4 1 1 31 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 30 62 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 34 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 34 66 -0.828 -1.242 -6.156 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - u - - - ML 129 128 6 131 3 1 1 17 36 -8.976 -0.010 -7.630 0.276 -1.230 -0.455 0.708 D 130 128 6 131 3 0 0 17 36 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - G - - - ML 132 131 3 134 3 1 1 16 34 -1.661 -0.559 -7.630 -3.440 -4.871 1.933 -4.182 D 133 131 3 134 3 0 0 14 33 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 15 34 -2.747 -0.272 -5.447 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - G - - - ML 135 134 3 137 3 1 1 14 33 -8.976 -0.010 -7.630 -1.019 -3.345 1.708 -2.834 D 136 134 3 137 3 0 0 15 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - a - - - ML 138 137 3 140 3 1 1 12 31 -8.976 -0.010 -7.630 0.803 -0.647 -0.473 -0.158 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - A - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 1.494 -2.704 -0.274 -2.302 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Flavi_ISFV_repeat_Rb ACC RF03543 DESC Insect-Specific Flavivirus 3' UTR repeats Rb LENG 47 MAXL 115 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Sep 11 15:45:45 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 19 EFFN 8.159424 CKSUM 4150418770 STATS LOCAL MSV -6.8513 0.71953 STATS LOCAL VITERBI -7.8991 0.71953 STATS LOCAL FORWARD -3.4905 0.71953 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53839 1.19634 1.18973 1.72220 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 0.00000 * 1 4.20530 0.10293 4.09835 2.71371 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 2 4.91024 0.04266 4.85816 3.62590 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 3 4.89873 0.04287 4.85082 3.62346 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 4 4.91309 0.04260 4.85997 3.62650 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 5 0.05562 4.71367 3.37048 4.53220 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 6 2.83788 4.04829 0.10281 3.83029 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 7 4.09960 2.47904 4.00270 0.12632 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.18921 4.71634 1.81132 1.46634 0.26236 1.09861 0.40547 8 2.87558 0.43896 3.54159 1.30954 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.02139 4.54852 4.54852 1.46634 0.26236 0.10390 2.31578 9 4.45491 0.07213 4.35885 3.09717 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 10 3.88796 0.12525 3.76372 2.60318 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.52728 4.71634 0.91418 1.46634 0.26236 1.09861 0.40547 11 1.61836 0.88955 1.52076 1.75800 11 c - - - 1.38629 1.38629 1.38629 1.38629 0.33335 1.31391 4.21893 0.10611 2.29585 0.04368 3.15268 12 1.73172 1.13318 2.84206 0.81484 13 u - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 13 0.03061 4.80519 4.42458 4.60683 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 14 3.47507 4.53676 0.05468 4.46144 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 15 2.37266 3.78729 0.15341 3.63689 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 16 4.21496 2.59651 4.08695 0.11216 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 17 3.87711 0.30140 3.70821 1.53720 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 18 0.56493 1.53220 2.76091 1.88186 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 19 1.19052 2.38887 1.70574 0.86141 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 20 4.14285 5.17882 0.03155 4.65207 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.43329 1.07097 4.71634 0.05143 2.99316 1.09861 0.40547 21 2.15678 4.01734 0.17338 3.66976 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 22 0.79539 1.86020 1.72361 1.53928 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 23 0.31384 3.65615 1.55410 3.43726 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32111 1.32536 4.71634 0.92434 0.50550 1.09861 0.40547 24 2.14336 2.97861 1.44290 0.51813 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 25 1.63039 3.86476 0.27869 3.63422 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 26 0.20765 4.24346 1.86923 3.96824 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 27 3.86658 0.24420 3.61321 1.77917 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 28 4.62554 0.09555 4.42360 2.66879 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 29 4.53902 0.03880 4.95158 3.89694 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 30 4.53902 0.03880 4.95158 3.89694 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 31 2.02002 3.93530 0.19805 3.59426 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 32 1.29577 2.75402 3.00721 0.48905 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 33 1.79367 1.83303 0.43357 3.66778 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 34 2.48863 4.53379 0.11383 4.28137 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 35 3.13172 1.61566 3.67962 0.31148 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 36 3.09191 4.19255 0.08555 3.84126 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 37 4.03324 0.55987 3.85578 0.94201 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 38 4.77211 3.79850 4.54149 0.04241 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 39 3.91650 5.05095 0.03531 4.78220 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 40 0.91328 1.79118 1.89259 1.26815 46 a - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 41 0.54315 3.61026 1.03238 3.32745 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 42 0.03061 4.80519 4.42458 4.60683 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 43 3.89523 5.01091 0.03640 4.73953 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 44 3.90420 5.02771 0.03594 4.75742 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 45 0.86017 4.25109 0.60907 3.97362 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 46 4.53902 0.03880 4.95158 3.89694 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.01806 4.71634 4.71634 1.46634 0.26236 1.09861 0.40547 47 0.31273 3.65656 1.55778 3.43810 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.00907 4.70735 * 1.46634 0.26236 0.00000 * //