INFERNAL1/a [1.1.5 | Sep 2023] NAME TEG147 ACC RF03535 DESC Staphylococcus aureus small RNA TEG147 STATES 184 NODES 46 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:12:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03535/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.152344 CKSUM 2470943135 NULL 0.000 0.000 0.000 0.000 GA 56.10 TC 81.40 NC 55.20 EFP7GF -9.4830 0.71921 ECMLC 0.62916 -5.53212 3.75084 1600000 412727 0.002907 ECMGC 0.43878 -15.09759 -1.75136 1600000 139746 0.002862 ECMLI 0.61486 -4.04274 4.82855 1600000 280590 0.004277 ECMGI 0.51047 -9.65776 1.09544 1600000 96822 0.004131 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -7.036 -7.243 -0.050 -5.658 IL 1 1 2 1 4 1 14 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 12 76 95 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 4 2 3 5 3 0 9 74 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 11 74 94 -8.047 -0.019 -6.701 1.074 -0.342 -1.196 -0.580 D 7 5 3 8 3 0 8 73 93 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 10 73 93 -8.047 -0.019 -6.701 -0.772 0.426 -1.554 0.791 D 10 8 3 11 3 0 7 72 92 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 9 72 92 -8.432 -0.219 -2.857 -0.778 0.560 -1.568 0.683 D 13 11 3 14 3 0 7 71 91 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 10 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - G - - MR 15 14 3 17 3 1 10 71 91 -8.233 -0.020 -6.551 -1.302 -2.476 1.650 -1.861 D 16 14 3 17 3 0 5 70 90 -7.482 -0.537 -1.712 IR 17 17 3 17 3 1 9 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - U - - MR 18 17 3 20 3 1 9 70 90 -8.432 -0.018 -6.750 -0.538 -0.939 -0.399 1.023 D 19 17 3 20 3 0 3 69 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - U - - MR 21 20 3 23 3 1 9 69 89 -8.432 -0.018 -6.750 -1.640 -1.609 -2.381 1.660 D 22 20 3 23 3 0 2 68 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - U - - MR 24 23 3 26 3 1 8 68 88 -8.432 -0.018 -6.750 -1.640 -1.609 -2.381 1.660 D 25 23 3 26 3 0 2 67 86 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - U - - MR 27 26 3 29 5 1 8 67 87 -7.166 -0.037 -6.981 -7.193 -8.085 -1.640 -1.609 -2.381 1.660 D 28 26 3 29 5 0 1 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 5 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 56 a u - - MP 30 29 3 34 6 2 9 66 86 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -2.561 -2.035 -2.760 1.754 -2.850 -3.560 0.947 0.316 -2.679 1.462 -3.153 1.607 0.681 -2.921 -0.793 -1.794 ML 31 29 3 34 6 1 3 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 3 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 4 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 4 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 55 A U - - MP 36 35 6 40 6 2 9 64 84 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -3.943 -2.936 -3.950 3.422 -4.364 -5.442 -0.054 -3.982 -3.836 0.915 -4.391 -0.388 -0.471 -4.604 -1.994 -2.775 ML 37 35 6 40 6 1 3 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 2 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 4 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 4 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 54 c g - - MP 42 41 6 46 6 2 8 62 82 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -3.848 -3.847 -3.670 -0.152 -2.535 -4.175 2.786 -3.281 -3.698 0.045 -4.052 -1.909 1.045 -3.964 1.972 -2.577 ML 43 41 6 46 6 1 2 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 2 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 3 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 4 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 53 C G - - MP 48 47 6 52 6 2 8 60 80 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 49 47 6 52 6 1 2 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 3 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 3 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 52 C G - - MP 54 53 6 58 6 2 7 58 78 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -3.880 -3.814 -3.711 -0.035 -2.571 -4.243 3.021 -3.307 -3.723 0.203 -4.089 -1.775 1.892 -3.996 -0.237 -2.576 ML 55 53 6 58 6 1 2 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 51 A U - - MP 60 59 6 64 6 2 7 56 76 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -3.943 -2.936 -3.950 3.422 -4.364 -5.442 -0.054 -3.982 -3.836 0.915 -4.391 -0.388 -0.471 -4.604 -1.994 -2.775 ML 61 59 6 64 6 1 2 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 50 U A - - MP 66 65 6 70 6 2 6 54 74 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.387 -4.216 -4.203 -0.497 -3.104 -4.749 1.228 -3.813 -4.206 -0.271 -4.569 -2.109 3.414 -4.530 -0.775 -3.010 ML 67 65 6 70 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 49 G C - - MP 72 71 6 76 6 2 5 52 72 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.907 -3.173 -5.023 0.089 -5.465 -4.758 -0.788 -5.276 -4.434 3.675 -4.759 -0.879 -1.169 -4.576 -2.835 -3.897 ML 73 71 6 76 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 48 A U - - MP 78 77 6 82 4 2 3 50 70 -7.036 -7.243 -0.050 -5.658 -3.943 -2.936 -3.950 3.422 -4.364 -5.442 -0.054 -3.982 -3.836 0.915 -4.391 -0.388 -0.471 -4.604 -1.994 -2.775 ML 79 77 6 82 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - G - - - ML 84 83 6 86 3 1 2 48 67 -8.047 -0.019 -6.701 0.147 -1.687 1.081 -1.098 D 85 83 6 86 3 0 0 47 66 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - - - ML 87 86 3 89 3 1 2 47 66 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 88 86 3 89 3 0 0 46 65 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - G - - - ML 90 89 3 92 3 1 2 46 65 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 91 89 3 92 3 0 0 45 64 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - U - - - ML 93 92 3 95 3 1 1 45 64 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 94 92 3 95 3 0 0 43 63 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - A - - - ML 96 95 3 98 3 1 1 44 63 -8.432 -0.018 -6.750 1.753 -2.539 -2.154 -2.098 D 97 95 3 98 3 0 0 42 62 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 47 - A - - MR 99 98 3 101 3 1 1 43 62 -8.432 -0.018 -6.750 1.753 -2.539 -2.154 -2.098 D 100 98 3 101 3 0 0 41 60 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 46 - A - - MR 102 101 3 104 3 1 1 42 61 -8.432 -0.018 -6.750 1.753 -2.539 -2.154 -2.098 D 103 101 3 104 3 0 0 40 59 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 45 - A - - MR 105 104 3 107 3 1 1 41 60 -8.432 -0.018 -6.750 1.753 -2.539 -2.154 -2.098 D 106 104 3 107 3 0 0 39 58 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 44 - G - - MR 108 107 3 110 5 1 1 40 59 -7.166 -0.037 -6.981 -7.193 -8.085 -1.756 -3.003 1.761 -2.390 D 109 107 3 110 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 43 G C - - MP 111 110 3 115 6 2 2 39 58 -9.142 -3.961 -0.115 -7.858 -8.137 -8.533 -4.907 -3.173 -5.023 0.089 -5.465 -4.758 -0.788 -5.276 -4.434 3.675 -4.759 -0.879 -1.169 -4.576 -2.835 -3.897 ML 112 110 3 115 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.874 -0.342 -6.385 -4.552 -5.658 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 41 g u - - MP 117 116 6 121 6 2 2 37 56 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 0.709 -1.784 -3.048 1.105 -3.302 -3.633 0.569 -3.157 -2.739 1.375 -3.100 2.366 0.267 -3.184 -1.186 -1.953 ML 118 116 6 121 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 40 a u - - MP 123 122 6 127 6 2 2 35 54 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -3.258 -2.827 -3.281 2.391 -2.855 -4.086 1.999 -3.272 -3.298 1.279 -3.770 -0.643 0.916 -3.488 -0.563 -2.221 ML 124 122 6 127 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 39 A U - - MP 129 128 6 133 4 2 2 33 52 -7.036 -7.243 -0.050 -5.658 -3.943 -2.936 -3.950 3.422 -4.364 -5.442 -0.054 -3.982 -3.836 0.915 -4.391 -0.388 -0.471 -4.604 -1.994 -2.775 ML 130 128 6 133 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 23 - C - - - ML 135 134 6 137 3 1 1 30 49 -8.432 -0.018 -6.750 -1.943 1.674 -2.772 -1.316 D 136 134 6 137 3 0 0 29 48 -5.620 -0.734 -1.403 IL 137 137 3 137 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 38 - A - - MR 138 137 3 140 3 1 1 29 48 -8.432 -0.018 -6.750 1.753 -2.539 -2.154 -2.098 D 139 137 3 140 3 0 0 27 46 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 37 - a - - MR 141 140 3 143 5 1 1 28 47 -7.166 -0.037 -6.981 -7.193 -8.085 0.662 -1.482 0.605 -0.895 D 142 140 3 143 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 36 C G - - MP 144 143 3 148 6 2 2 27 46 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 145 143 3 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 35 C G - - MP 150 149 6 154 6 2 2 25 44 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 151 149 6 154 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 34 C G - - MP 156 155 6 160 4 2 2 23 42 -7.036 -7.243 -0.050 -5.658 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 157 155 6 160 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - A - - - ML 162 161 6 164 3 1 1 20 39 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 163 161 6 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - u - - - ML 165 164 3 167 3 1 1 19 37 -8.047 -0.019 -6.701 -0.778 0.560 -1.568 0.683 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - C - - - ML 168 167 3 170 3 1 1 17 36 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 169 167 3 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - A - - - ML 171 170 3 173 3 1 1 16 35 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - U - - - ML 174 173 3 176 3 1 1 15 33 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - A - - - ML 177 176 3 179 3 1 1 13 31 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - c - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.134 0.300 -1.125 0.279 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TEG147 ACC RF03535 DESC Staphylococcus aureus small RNA TEG147 LENG 60 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:12:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03535/CM NSEQ 4 EFFN 2.910156 CKSUM 2470943135 STATS LOCAL MSV -8.4660 0.71921 STATS LOCAL VITERBI -8.4852 0.71921 STATS LOCAL FORWARD -3.8332 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21218 1.55607 1.43772 1.37034 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 0.00000 * 1 0.11761 3.49592 3.19556 3.22655 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 2 0.57751 1.61714 2.35645 1.92768 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 3 2.07257 1.03382 2.63127 0.80631 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 4 2.07822 0.93148 2.64449 0.89200 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 5 1.34313 1.56527 0.90545 2.07481 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 6 0.25047 3.09370 2.06377 3.01069 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 7 2.88375 0.75252 2.67851 0.90577 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 8 3.46047 0.18410 3.26705 2.31654 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 9 2.74875 0.58235 2.51059 1.21676 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 10 0.25047 3.09368 2.06377 3.01067 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 11 3.26915 2.13335 3.05302 0.22777 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 12 2.74939 3.49351 0.13553 3.43004 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 13 0.25063 3.09280 2.06357 3.00946 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 14 1.30705 2.74610 0.56230 2.35065 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 15 0.11761 3.49592 3.19556 3.22655 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 16 2.95929 3.87002 0.11057 3.44318 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 17 2.85341 2.77661 3.37948 0.16719 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 18 0.11761 3.49592 3.19556 3.22655 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 19 2.75195 3.49688 0.13505 3.43464 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 20 1.27734 2.58110 0.57986 2.45859 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 21 0.92321 1.29487 1.77336 1.83846 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 22 0.25047 3.09368 2.06377 3.01067 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 23 3.15662 0.14836 3.72979 2.64070 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 24 3.46282 0.18391 3.26825 2.31697 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 25 3.46446 0.18377 3.26909 2.31727 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 26 3.46403 0.18381 3.26887 2.31719 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 27 0.11761 3.49592 3.19556 3.22655 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 28 2.07822 0.93148 2.64449 0.89200 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 29 3.15662 0.14836 3.72979 2.64070 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 30 0.11761 3.49592 3.19556 3.22655 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 31 2.85341 2.77661 3.37948 0.16719 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 32 0.11761 3.49592 3.19556 3.22655 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 33 1.30387 1.12404 2.25799 1.20733 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 34 2.59915 3.43869 0.15787 3.22904 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 35 2.60107 3.44155 0.15744 3.23234 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 36 2.60378 3.44559 0.15684 3.23702 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 37 0.89543 2.58384 0.90708 2.18584 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 38 0.11761 3.49592 3.19556 3.22655 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 39 3.22852 2.38721 2.90122 0.20636 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 40 2.08176 1.95900 1.18868 0.84474 40 u - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 41 1.60146 1.89442 2.38453 0.58724 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.22411 1.70035 4.00889 0.18817 1.76300 1.09861 0.40547 42 3.64772 0.15951 3.34805 2.45063 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 43 2.95929 3.87002 0.11057 3.44318 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 44 0.11761 3.49592 3.19556 3.22655 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 45 0.11761 3.49592 3.19556 3.22655 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 46 0.11761 3.49592 3.19556 3.22655 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 47 3.22933 2.38734 2.90156 0.20628 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 48 3.61622 0.16170 3.33346 2.44476 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 49 0.25825 3.24162 1.96988 3.01553 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 50 3.23229 2.38779 2.90280 0.20600 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 51 1.36694 2.67707 0.51913 2.50945 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 52 2.59706 3.43559 0.15834 3.22546 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 53 2.07042 2.84078 0.29470 2.64889 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 54 3.24232 2.38930 2.90697 0.20507 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 55 2.29789 1.76452 2.02652 0.51673 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 56 2.85341 2.77661 3.37948 0.16719 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 57 2.85341 2.77661 3.37948 0.16719 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 58 2.85341 2.77661 3.37948 0.16719 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03698 4.00889 4.00889 1.46634 0.26236 1.09861 0.40547 59 1.88407 2.15741 1.67249 0.60766 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.21078 4.00889 1.76089 1.46634 0.26236 1.09861 0.40547 60 2.61043 3.47560 0.16459 3.05106 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.02217 3.82028 * 1.46634 0.26236 0.00000 * //