{"rfam": {"acc": "RF03533", "id": "SQ1002_RNA", "description": "Clostridioides difficile sRNA SQ1002", "comment": "This 191nt small RNA was identified in Clostridioides difficile 630 by RNA deep sequencing and confirmed by Northern Blot and RT-PCR [1]. Extremities were confirmed by 5\u00e2\u20ac\u2122 and 3\u00e2\u20ac\u2122-RACE [1]. The element is found in several C. difficile strains in syntenic positions between a putative acyltransferase gene and a Ferrous iron transport gene. No homologues were found outside C. difficile, although a putative paralogue was found in C. difficile 630, located between a Tryptophanyl-tRNA synthetase gene and a pseudogene. Due to lack of sequence variation, the proposed secondary structure is not supported by any covariation and should be considered speculative", "curation": {"author": "Rabearivelo N, Marty M, Sabban J", "seed_source": "Predicted; Blastn; LocARNA;", "num_seed": 6, "num_full": 1, "num_species": 1, "type": "Gene; sRNA;", "structure_source": "Predicted; R-scape;"}, "cm": {"build_command": "cmbuild -F CM SEED", "calibrate_command": "cmcalibrate --mpi CM", "search_command": "cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB", "cutoffs": {"gathering": 128.0, "trusted": 247.4, "noise": 120.8}}, "release": {"date": "2026-01-16", "number": "15.1"}, "clan": {"acc": null, "id": null}}}