INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1264 ACC RF03528 DESC mir-1264 microRNA precursor family STATES 205 NODES 48 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 10:42:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/updates/RF03528/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.385742 CKSUM 1240116102 NULL 0.000 0.000 0.000 0.000 GA 79.00 TC 79.00 NC 76.60 EFP7GF -8.0618 0.71921 ECMLC 0.65581 -5.37440 3.58325 1600000 427006 0.002810 ECMGC 0.42567 -13.71997 0.10537 1600000 143848 0.002781 ECMLI 0.63510 -3.59860 4.81393 1600000 250906 0.004783 ECMGI 0.47884 -7.96317 3.28290 1600000 87253 0.004584 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 103 -6.644 -7.889 -0.095 -4.343 IL 1 1 2 1 4 1 12 84 104 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 85 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 73 - G - - MR 3 2 3 5 3 1 13 83 103 -8.147 -0.022 -6.465 -1.105 -2.244 1.585 -1.628 D 4 2 3 5 3 0 8 81 101 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 13 84 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 72 - U - - MR 6 5 3 8 3 1 13 82 102 -8.147 -0.022 -6.465 -1.086 -1.156 -1.796 1.481 D 7 5 3 8 3 0 7 80 100 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 12 83 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 71 - A - - MR 9 8 3 11 3 1 12 81 101 -8.147 -0.022 -6.465 1.603 -1.928 -1.604 -1.430 D 10 8 3 11 3 0 6 79 99 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 70 - U - - MR 12 11 3 14 3 1 11 80 100 -8.147 -0.022 -6.465 -1.086 -1.156 -1.796 1.481 D 13 11 3 14 3 0 5 78 98 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 69 - U - - MR 15 14 3 17 3 1 11 79 99 -8.147 -0.022 -6.465 -1.086 -1.156 -1.796 1.481 D 16 14 3 17 3 0 4 77 97 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 68 - G - - MR 18 17 3 20 5 1 10 78 98 -6.901 -0.136 -6.716 -3.889 -7.820 -1.105 -2.244 1.585 -1.628 D 19 17 3 20 5 0 4 77 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 8 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 67 a u - - MP 21 20 3 25 6 2 11 77 97 -8.982 -8.921 -0.023 -7.698 -7.978 -8.373 -3.320 -2.483 -3.365 2.896 -3.472 -4.506 0.803 -3.430 -3.283 1.598 -3.806 -0.048 0.380 -3.770 -1.143 -2.233 ML 22 20 3 25 6 1 5 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 5 75 95 -7.346 -6.075 -1.081 -6.053 -1.187 -4.267 -0.053 -0.430 -0.659 0.732 D 24 20 3 25 6 0 1 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 66 G C - - MP 27 26 6 31 6 2 9 75 95 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -4.310 -2.891 -4.380 0.479 -4.625 -4.517 -0.093 -4.584 -4.032 3.515 -4.402 -0.578 -0.492 -4.181 -2.109 -3.263 ML 28 26 6 31 6 1 5 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 65 G C - - MP 33 32 6 37 6 2 8 73 93 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -4.310 -2.891 -4.380 0.479 -4.625 -4.517 -0.093 -4.584 -4.032 3.515 -4.402 -0.578 -0.492 -4.181 -2.109 -3.263 ML 34 32 6 37 6 1 4 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 64 U A - - MP 39 38 6 43 4 2 6 71 91 -6.706 -6.913 -0.063 -5.327 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 40 38 6 43 4 1 3 71 91 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 71 91 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 70 90 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 5 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 4 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 45 44 6 47 3 1 5 68 88 -8.147 -0.022 -6.465 -1.217 1.445 -2.016 -0.739 D 46 44 6 47 3 0 0 67 87 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 3 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - C - - MR 48 47 3 50 5 1 4 67 87 -6.901 -0.045 -6.716 -6.928 -7.820 -1.217 1.445 -2.016 -0.739 D 49 47 3 50 5 0 0 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 2 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 62 C G - - MP 51 50 3 55 6 2 6 66 86 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -4.111 -3.973 -3.871 -0.250 -2.695 -4.339 3.388 -3.459 -3.909 0.065 -4.214 -1.916 0.859 -4.207 -0.394 -2.766 ML 52 50 3 55 6 1 1 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 61 U A - - MP 57 56 6 61 6 2 5 64 84 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 58 56 6 61 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 60 C G - - MP 63 62 6 67 6 2 5 62 82 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -4.111 -3.973 -3.871 -0.250 -2.695 -4.339 3.388 -3.459 -3.909 0.065 -4.214 -1.916 0.859 -4.207 -0.394 -2.766 ML 64 62 6 67 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 59 A U - - MP 69 68 6 73 6 2 4 60 80 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.450 -2.574 -3.489 3.050 -3.661 -4.699 0.619 -3.550 -3.399 1.451 -3.929 -0.112 0.199 -3.942 -1.324 -2.347 ML 70 68 6 73 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 58 A U - - MP 75 74 6 79 4 2 2 58 78 -6.644 -7.889 -0.095 -4.343 -3.450 -2.574 -3.489 3.050 -3.661 -4.699 0.619 -3.550 -3.399 1.451 -3.929 -0.112 0.199 -3.942 -1.324 -2.347 ML 76 74 6 79 4 1 1 58 77 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 57 77 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 56 75 -12.737 -14.007 -2.036 -0.404 IL 79 79 5 79 4 1 1 58 77 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 57 - U - - MR 81 80 6 83 5 1 1 56 76 -6.901 -0.045 -6.716 -6.928 -7.820 -1.086 -1.156 -1.796 1.481 D 82 80 6 83 5 0 0 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 56 U A - - MP 84 83 3 88 6 2 2 55 75 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 85 83 3 88 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 55 A U - - MP 90 89 6 94 6 2 2 53 73 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.450 -2.574 -3.489 3.050 -3.661 -4.699 0.619 -3.550 -3.399 1.451 -3.929 -0.112 0.199 -3.942 -1.324 -2.347 ML 91 89 6 94 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 54 A U - - MP 96 95 6 100 6 2 2 51 71 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.450 -2.574 -3.489 3.050 -3.661 -4.699 0.619 -3.550 -3.399 1.451 -3.929 -0.112 0.199 -3.942 -1.324 -2.347 ML 97 95 6 100 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 53 G C - - MP 102 101 6 106 4 2 2 49 69 -6.706 -6.913 -0.063 -5.327 -4.310 -2.891 -4.380 0.479 -4.625 -4.517 -0.093 -4.584 -4.032 3.515 -4.402 -0.578 -0.492 -4.181 -2.109 -3.263 ML 103 101 6 106 4 1 1 50 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 108 107 6 110 5 1 1 47 66 -6.901 -0.045 -6.716 -6.928 -7.820 -1.086 -1.156 -1.796 1.481 D 109 107 6 110 5 0 0 46 65 -4.959 -0.803 -4.221 -2.596 -2.508 IL 110 110 3 110 5 1 1 47 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 52 A U - - MP 111 110 3 115 6 2 2 46 65 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.450 -2.574 -3.489 3.050 -3.661 -4.699 0.619 -3.550 -3.399 1.451 -3.929 -0.112 0.199 -3.942 -1.324 -2.347 ML 112 110 3 115 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 51 u g - - MP 117 116 6 121 6 2 2 44 63 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.397 -3.352 -3.285 0.240 -2.315 -3.850 1.946 -3.009 -3.323 0.519 -3.708 -1.436 1.691 -3.546 2.254 -2.238 ML 118 116 6 121 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 50 U A - - MP 123 122 6 127 6 2 2 42 61 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 124 122 6 127 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 49 U A - - MP 129 128 6 133 6 2 2 40 59 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 130 128 6 133 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 48 G C - - MP 135 134 6 139 6 2 2 38 57 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -4.310 -2.891 -4.380 0.479 -4.625 -4.517 -0.093 -4.584 -4.032 3.515 -4.402 -0.578 -0.492 -4.181 -2.109 -3.263 ML 136 134 6 139 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 47 U A - - MP 141 140 6 145 6 2 2 36 55 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 142 140 6 145 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 34 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 35 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 46 U A - - MP 147 146 6 151 6 2 2 34 53 -9.020 -8.959 -0.022 -7.736 -8.015 -8.410 -3.757 -3.562 -3.640 0.108 -2.682 -4.242 1.635 -3.344 -3.651 0.440 -4.044 -1.473 3.070 -3.922 -0.369 -2.513 ML 148 146 6 151 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 45 G C - - MP 153 152 6 157 4 2 2 32 51 -6.706 -6.913 -0.063 -5.327 -4.310 -2.891 -4.380 0.479 -4.625 -4.517 -0.093 -4.584 -4.032 3.515 -4.402 -0.578 -0.492 -4.181 -2.109 -3.263 ML 154 152 6 157 4 1 1 32 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - A - - - ML 159 158 6 161 3 1 1 29 48 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 160 158 6 161 3 0 0 28 47 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - A - - - ML 162 161 3 164 3 1 1 28 47 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 163 161 3 164 3 0 0 27 46 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - A - - - ML 165 164 3 167 3 1 1 27 46 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 166 164 3 167 3 0 0 26 45 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - G - - - ML 168 167 3 170 3 1 1 26 45 -7.741 -0.024 -6.395 -0.074 -1.525 1.120 -0.919 D 169 167 3 170 3 0 0 25 44 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - A - - - ML 171 170 3 173 3 1 1 25 44 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 172 170 3 173 3 0 0 24 43 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - A - - - ML 174 173 3 176 3 1 1 24 43 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 175 173 3 176 3 0 0 23 42 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - U - - - ML 177 176 3 179 3 1 1 23 41 -7.741 -0.024 -6.395 -1.086 -1.156 -1.796 1.481 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - A - - - ML 180 179 3 182 3 1 1 21 40 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - A - - - ML 183 182 3 185 3 1 1 20 39 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - A - - - ML 186 185 3 188 3 1 1 19 38 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - U - - - ML 189 188 3 191 3 1 1 18 36 -7.741 -0.024 -6.395 -1.086 -1.156 -1.796 1.481 D 190 188 3 191 3 0 0 17 36 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - a - - - ML 192 191 3 194 3 1 1 16 35 -7.741 -0.024 -6.395 0.909 -1.210 0.062 -0.631 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 42 - A - - - ML 195 194 3 197 3 1 1 15 33 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 43 - A - - - ML 198 197 3 200 3 1 1 13 32 -7.741 -0.024 -6.395 1.603 -1.928 -1.604 -1.430 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 44 - c - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -0.439 0.834 -0.674 -0.231 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1264 ACC RF03528 DESC mir-1264 microRNA precursor family LENG 67 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 10:42:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/updates/RF03528/CM NSEQ 6 EFFN 2.094727 CKSUM 1240116102 STATS LOCAL MSV -8.1721 0.71921 STATS LOCAL VITERBI -9.0153 0.71921 STATS LOCAL FORWARD -3.3634 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15623 1.65095 1.53885 1.27713 1.38629 1.38629 1.38629 1.38629 0.36641 1.60551 2.24437 1.77251 0.18622 0.00000 * 1 0.49089 2.42156 1.58357 2.36560 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04915 3.73050 3.73050 1.46634 0.26236 0.34675 1.22751 2 2.50230 3.10833 0.19121 3.04772 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 3 2.50289 3.10899 0.19106 3.04865 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 4 2.83045 1.80469 2.56848 0.35691 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 5 2.69764 0.23398 3.27146 2.27004 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 6 3.06689 0.27326 2.82904 2.01389 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 7 2.83491 1.80486 2.57032 0.35629 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 8 3.07222 0.27259 2.83147 2.01479 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 9 0.39623 2.62594 1.72749 2.56333 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 10 0.39628 2.62579 1.72747 2.56311 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 11 2.81398 1.80409 2.56160 0.35921 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 12 0.39755 2.62177 1.72690 2.55709 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 13 0.39699 2.62355 1.72715 2.55976 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 14 2.50396 3.11018 0.19079 3.05033 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 15 2.49573 2.47932 3.00816 0.24286 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 16 0.39626 2.62585 1.72748 2.56320 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 17 2.64162 1.46348 2.40870 0.49858 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 18 2.83558 1.80488 2.57060 0.35620 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 19 2.83511 1.80486 2.57041 0.35627 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 20 2.50602 3.11249 0.19028 3.05358 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 21 2.83411 1.80483 2.56999 0.35640 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 22 2.83368 1.80481 2.56981 0.35646 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 23 2.50518 3.11154 0.19049 3.05225 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 24 0.17711 3.11664 2.85285 2.80802 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 25 0.17711 3.11664 2.85285 2.80802 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 26 0.17711 3.11664 2.85285 2.80802 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 27 1.52530 2.68347 0.49204 2.27557 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 28 0.17711 3.11664 2.85285 2.80802 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 29 0.17711 3.11664 2.85285 2.80802 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 30 2.49573 2.47932 3.00816 0.24286 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 31 0.17711 3.11664 2.85285 2.80802 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 32 0.17711 3.11664 2.85285 2.80802 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 33 0.17711 3.11664 2.85285 2.80802 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 34 2.49573 2.47932 3.00816 0.24286 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 35 0.68992 2.39117 1.30483 1.99774 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 36 0.17711 3.11664 2.85285 2.80802 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 37 0.17711 3.11664 2.85285 2.80802 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 38 1.88480 0.65289 1.92958 1.70159 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 39 3.25788 0.22460 2.94384 2.20698 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 40 0.40486 2.75109 1.64169 2.58474 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 41 0.40484 2.75116 1.64169 2.58482 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 42 3.25838 0.22455 2.94405 2.20708 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 43 0.40491 2.75086 1.64167 2.58445 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 44 0.40510 2.75016 1.64163 2.58356 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 45 1.50331 2.56677 0.49361 2.40343 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 46 2.77702 2.00599 2.43382 0.33471 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 47 3.26001 0.22438 2.94475 2.20740 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 48 2.79079 2.00738 2.43872 0.33266 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 49 2.79182 2.00748 2.43909 0.33251 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 50 0.40434 2.75307 1.64182 2.58725 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 51 2.49573 2.47932 3.00816 0.24286 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 52 2.79215 2.00751 2.43921 0.33246 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 53 2.79335 2.00763 2.43963 0.33228 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 54 2.29251 3.00077 0.23525 2.83255 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 55 0.40391 2.75477 1.64193 2.58942 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 56 2.29487 3.00383 0.23447 2.83634 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 57 2.69764 0.23398 3.27146 2.27004 63 C - - - 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 58 0.40921 2.73440 1.64058 2.56360 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 59 3.15359 0.23598 2.89789 2.18601 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 60 3.07784 0.24511 2.86283 2.16965 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 61 2.47749 1.83598 2.22102 0.43373 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 62 2.57297 3.43263 0.17198 3.00799 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 63 2.49573 2.47932 3.00816 0.24286 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 64 2.49573 2.47932 3.00816 0.24286 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 65 0.17711 3.11664 2.85285 2.80802 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 66 2.49573 2.47932 3.00816 0.24286 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81827 3.81827 1.46634 0.26236 1.09861 0.40547 67 2.57297 3.43263 0.17198 3.00799 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.02272 3.79606 * 1.46634 0.26236 0.00000 * //