INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3059 ACC RF03520 DESC mir-3059 microRNA precursor family STATES 181 NODES 42 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03520/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.550781 CKSUM 2592215388 NULL 0.000 0.000 0.000 0.000 GA 88.00 TC 88.10 NC 85.30 EFP7GF -6.8724 0.72614 ECMLC 0.63548 -6.43864 3.09085 1600000 511917 0.002344 ECMGC 0.47232 -15.73397 -3.13142 1600000 153868 0.002600 ECMLI 0.60058 -5.15859 4.10549 1600000 312982 0.003834 ECMGI 0.48332 -11.76542 -0.46271 1600000 94302 0.004242 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -6.784 -6.991 -0.060 -5.405 IL 1 1 2 1 4 1 15 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 14 75 95 -7.813 -0.023 -6.467 -1.211 -1.257 -1.929 1.530 D 4 2 3 5 3 0 9 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 13 74 94 -7.813 -0.023 -6.467 -1.211 -1.257 -1.929 1.530 D 7 5 3 8 3 0 8 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 12 73 92 -8.213 -0.021 -6.531 -1.211 -1.257 -1.929 1.530 D 10 8 3 11 3 0 7 72 91 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 11 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - G - - MR 12 11 3 14 3 1 11 72 91 -8.213 -0.021 -6.531 -1.256 -2.422 1.637 -1.807 D 13 11 3 14 3 0 5 70 90 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - G - - MR 15 14 3 17 3 1 11 71 90 -8.213 -0.021 -6.531 -1.256 -2.422 1.637 -1.807 D 16 14 3 17 3 0 4 69 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - G - - MR 18 17 3 20 3 1 10 70 89 -8.213 -0.021 -6.531 -1.256 -2.422 1.637 -1.807 D 19 17 3 20 3 0 4 68 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 9 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 56 - U - - MR 21 20 3 23 3 1 9 69 88 -8.213 -0.021 -6.531 -1.211 -1.257 -1.929 1.530 D 22 20 3 23 3 0 3 67 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 8 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - U - - MR 24 23 3 26 5 1 9 68 87 -6.962 -0.043 -6.777 -6.990 -7.881 -1.211 -1.257 -1.929 1.530 D 25 23 3 26 5 0 2 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 6 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 4 54 C G - - MP 27 26 3 31 6 2 8 67 86 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 28 26 3 31 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 4 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 53 C G - - MP 33 32 6 37 6 2 7 65 84 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 34 32 6 37 6 1 3 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 52 U A - - MP 39 38 6 43 4 2 5 63 82 -6.714 -7.960 -0.090 -4.413 -3.885 -3.698 -3.756 -0.017 -2.766 -4.347 1.554 -3.439 -3.764 0.288 -4.152 -1.607 3.159 -4.047 -0.450 -2.617 ML 40 38 6 43 4 1 2 62 82 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 62 81 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 60 80 -12.737 -14.007 -2.036 -0.404 IL 43 43 5 43 4 1 2 62 82 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - A - - MR 45 44 6 47 5 1 5 61 80 -6.962 -0.043 -6.777 -6.990 -7.881 1.644 -2.068 -1.730 -1.582 D 46 44 6 47 5 0 0 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 50 C G - - MP 48 47 3 52 6 2 6 60 79 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 49 47 3 52 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 49 U A - - MP 54 53 6 58 6 2 6 58 77 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.885 -3.698 -3.756 -0.017 -2.766 -4.347 1.554 -3.439 -3.764 0.288 -4.152 -1.607 3.159 -4.047 -0.450 -2.617 ML 55 53 6 58 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 48 C G - - MP 60 59 6 64 6 2 4 56 75 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 61 59 6 64 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 47 U A - - MP 66 65 6 70 4 2 3 54 73 -6.784 -6.991 -0.060 -5.405 -3.885 -3.698 -3.756 -0.017 -2.766 -4.347 1.554 -3.439 -3.764 0.288 -4.152 -1.607 3.159 -4.047 -0.450 -2.617 ML 67 65 6 70 4 1 1 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 54 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 55 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - G - - - ML 72 71 6 74 3 1 2 51 71 -7.813 -0.023 -6.467 -1.256 -2.422 1.637 -1.807 D 73 71 6 74 3 0 0 50 70 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 12 - C - - - ML 75 74 3 77 3 1 1 50 70 -8.213 -0.021 -6.531 -1.380 1.510 -2.189 -0.868 D 76 74 3 77 3 0 0 49 68 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - A - - MR 78 77 3 80 5 1 1 49 69 -6.962 -0.043 -6.777 -6.990 -7.881 1.644 -2.068 -1.730 -1.582 D 79 77 3 80 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 45 C G - - MP 81 80 3 85 6 2 2 48 68 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 82 80 3 85 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 44 C G - - MP 87 86 6 91 6 2 2 46 66 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 88 86 6 91 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 43 C G - - MP 93 92 6 97 4 2 2 44 64 -6.784 -6.991 -0.060 -5.405 -4.247 -4.124 -3.987 -0.387 -2.775 -4.437 3.445 -3.554 -4.027 -0.098 -4.319 -2.068 0.767 -4.335 -0.476 -2.878 ML 94 92 6 97 4 1 1 45 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - A - - - ML 99 98 6 101 5 1 1 42 61 -6.962 -0.043 -6.777 -6.990 -7.881 1.644 -2.068 -1.730 -1.582 D 100 98 6 101 5 0 0 40 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 101 101 3 101 5 1 1 42 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 42 U A - - MP 102 101 3 106 6 2 2 41 60 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.885 -3.698 -3.756 -0.017 -2.766 -4.347 1.554 -3.439 -3.764 0.288 -4.152 -1.607 3.159 -4.047 -0.450 -2.617 ML 103 101 3 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 41 A U - - MP 108 107 6 112 6 2 2 39 58 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.551 -2.647 -3.585 3.149 -3.806 -4.850 0.479 -3.642 -3.489 1.339 -4.025 -0.165 0.060 -4.076 -1.464 -2.435 ML 109 107 6 112 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 40 G C - - MP 114 113 6 118 6 2 2 37 56 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.449 -2.956 -4.526 0.391 -4.820 -4.576 -0.256 -4.744 -4.130 3.559 -4.489 -0.646 -0.650 -4.274 -2.278 -3.407 ML 115 113 6 118 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 39 g u - - MP 120 119 6 124 6 2 2 35 54 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.429 -2.274 -3.579 1.241 -4.140 -4.872 0.216 -3.629 -3.296 1.610 -3.807 2.854 -0.146 -4.115 -1.725 -2.322 ML 121 119 6 124 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 38 G C - - MP 126 125 6 130 4 2 2 33 52 -6.784 -6.991 -0.060 -5.405 -4.449 -2.956 -4.526 0.391 -4.820 -4.576 -0.256 -4.744 -4.130 3.559 -4.489 -0.646 -0.650 -4.274 -2.278 -3.407 ML 127 125 6 130 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 132 131 6 134 3 1 1 30 49 -8.213 -0.021 -6.531 -1.211 -1.257 -1.929 1.530 D 133 131 6 134 3 0 0 29 48 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 37 - C - - MR 135 134 3 137 5 1 1 29 48 -6.962 -0.043 -6.777 -6.990 -7.881 -1.380 1.510 -2.189 -0.868 D 136 134 3 137 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 36 G C - - MP 138 137 3 142 6 2 2 28 47 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -4.449 -2.956 -4.526 0.391 -4.820 -4.576 -0.256 -4.744 -4.130 3.559 -4.489 -0.646 -0.650 -4.274 -2.278 -3.407 ML 139 137 3 142 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 35 U A - - MP 144 143 6 148 6 2 2 26 45 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.885 -3.698 -3.756 -0.017 -2.766 -4.347 1.554 -3.439 -3.764 0.288 -4.152 -1.607 3.159 -4.047 -0.450 -2.617 ML 145 143 6 148 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 34 A U - - MP 150 149 6 154 6 2 2 24 43 -9.047 -8.986 -0.022 -7.763 -8.043 -8.438 -3.551 -2.647 -3.585 3.149 -3.806 -4.850 0.479 -3.642 -3.489 1.339 -4.025 -0.165 0.060 -4.076 -1.464 -2.435 ML 151 149 6 154 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 33 G C - - MP 156 155 6 160 4 2 2 22 41 -6.784 -6.991 -0.060 -5.405 -4.449 -2.956 -4.526 0.391 -4.820 -4.576 -0.256 -4.744 -4.130 3.559 -4.489 -0.646 -0.650 -4.274 -2.278 -3.407 ML 157 155 6 160 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - C - - - ML 162 161 6 164 3 1 1 19 38 -7.813 -0.023 -6.467 -1.380 1.510 -2.189 -0.868 D 163 161 6 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - U - - - ML 165 164 3 167 3 1 1 18 36 -7.813 -0.023 -6.467 -1.211 -1.257 -1.929 1.530 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - C - - - ML 168 167 3 170 3 1 1 16 35 -7.813 -0.023 -6.467 -1.380 1.510 -2.189 -0.868 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 171 170 3 173 3 1 1 15 33 -7.813 -0.023 -6.467 -1.211 -1.257 -1.929 1.530 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - A - - - ML 174 173 3 176 3 1 1 13 32 -7.813 -0.023 -6.467 1.644 -2.068 -1.730 -1.582 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.644 -2.068 -1.730 -1.582 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3059 ACC RF03520 DESC mir-3059 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03520/CM NSEQ 2 EFFN 1.691406 CKSUM 2592215388 STATS LOCAL MSV -7.4764 0.72614 STATS LOCAL VITERBI -8.9892 0.72614 STATS LOCAL FORWARD -2.9640 0.72614 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55184 1.37012 1.29008 1.35163 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.29777 2.31634 2.79977 0.30102 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.29777 2.31634 2.79977 0.30102 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.29777 2.31634 2.79977 0.30102 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.85563 0.34025 2.58809 1.85965 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.85991 0.33957 2.58987 1.86031 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.62042 1.65227 2.32642 0.44946 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.83607 0.34339 2.57993 1.85660 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.61081 1.65227 2.32293 0.45110 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.85423 0.34047 2.58752 1.85944 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.61705 1.65227 2.32520 0.45004 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.34326 3.16645 0.22652 2.74059 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.43747 0.30665 3.00265 2.06312 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.85702 0.34003 2.58867 1.85987 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.86073 0.33945 2.59021 1.86044 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.86191 0.33926 2.59070 1.86062 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.22518 2.89995 2.65793 2.57039 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.61962 1.65227 2.32613 0.44960 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.51019 2.38641 1.55756 2.33291 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.37054 2.88367 0.23363 2.83052 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.77988 2.55070 0.40558 2.44503 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.37012 2.88324 0.23375 2.82990 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.29777 2.31634 2.79977 0.30102 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.36785 2.88101 0.23442 2.82665 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.61966 1.65227 2.32615 0.44959 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.51017 2.38647 1.55756 2.33302 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.37071 2.88383 0.23358 2.83076 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.43747 0.30665 3.00265 2.06312 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.29777 2.31634 2.79977 0.30102 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.43747 0.30665 3.00265 2.06312 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.29777 2.31634 2.79977 0.30102 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.22518 2.89995 2.65793 2.57039 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.22518 2.89995 2.65793 2.57039 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.04941 0.27315 2.71457 2.07621 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.56629 1.81408 2.20262 0.43128 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.51121 2.50531 1.48887 2.37567 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.05649 0.27225 2.71738 2.07759 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.43747 0.30665 3.00265 2.06312 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.04386 0.27387 2.71236 2.07514 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.66145 1.62768 2.35574 0.44794 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.04107 0.27423 2.71125 2.07459 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.55810 1.81363 2.20010 0.43279 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.51334 2.49913 1.48901 2.36709 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.13581 2.75843 0.29346 2.62025 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.13652 2.75925 0.29318 2.62133 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.13738 2.76026 0.29283 2.62266 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.22518 2.89995 2.65793 2.57039 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.51194 2.50317 1.48892 2.37270 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.13393 2.75623 0.29423 2.61735 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.51181 2.50356 1.48891 2.37325 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.13452 2.75692 0.29399 2.61825 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.22518 2.89995 2.65793 2.57039 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.51141 2.50472 1.48889 2.37485 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.13637 2.75907 0.29324 2.62110 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.13719 2.76004 0.29290 2.62237 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.29777 2.31634 2.79977 0.30102 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.29777 2.31634 2.79977 0.30102 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.34326 3.16645 0.22652 2.74059 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.34326 3.16645 0.22652 2.74059 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.34326 3.16645 0.22652 2.74059 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //