INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-6128 ACC RF03514 DESC mir-6128 microRNA precursor family STATES 196 NODES 41 CLEN 64 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 12:12:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03514/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.432617 CKSUM 2961753882 NULL 0.000 0.000 0.000 0.000 GA 92.00 TC 92.70 NC 89.60 EFP7GF -8.1331 0.71925 ECMLC 0.61778 -4.15598 5.12956 1600000 371930 0.003226 ECMGC 0.42347 -15.16915 0.18842 1600000 266987 0.001498 ECMLI 0.59080 -2.60370 6.40760 1600000 246216 0.004874 ECMGI 0.44314 -10.32608 3.09990 1600000 153440 0.002607 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.728 -6.935 -0.062 -5.350 IL 1 1 2 1 4 1 8 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 8 79 98 -8.166 -0.021 -6.484 1.615 -1.968 -1.641 -1.473 D 4 2 3 5 3 0 2 78 97 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 6 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - G - - MR 6 5 3 8 5 1 8 78 97 -6.918 -0.044 -6.734 -6.946 -7.838 -1.149 -2.295 1.601 -1.680 D 7 5 3 8 5 0 1 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 4 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 63 g u - - MP 9 8 3 13 6 2 9 77 96 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.369 -2.243 -3.513 1.272 -4.025 -4.763 0.318 -3.573 -3.249 1.689 -3.759 2.764 -0.044 -4.014 -1.621 -2.271 ML 10 8 3 13 6 1 3 75 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 75 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 73 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 62 A U - - MP 15 14 6 19 6 2 8 75 94 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 16 14 6 19 6 1 2 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 61 A U - - MP 21 20 6 25 6 2 8 73 92 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 22 20 6 25 6 1 2 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 60 U A - - MP 27 26 6 31 6 2 7 71 90 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 28 26 6 31 6 1 2 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 59 U A - - MP 33 32 6 37 6 2 6 69 88 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 34 32 6 37 6 1 2 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 58 A U - - MP 39 38 6 43 6 2 5 67 86 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 40 38 6 43 6 1 2 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 57 U A - - MP 45 44 6 49 4 2 3 65 84 -6.728 -6.935 -0.062 -5.350 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 46 44 6 49 4 1 1 65 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 65 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 64 83 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 2 67 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 6 53 3 1 2 62 81 -7.762 -0.024 -6.416 1.615 -1.968 -1.641 -1.473 D 52 50 6 53 3 0 0 61 80 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 54 53 3 56 3 1 2 61 80 -8.166 -0.021 -6.484 -1.149 -2.295 1.601 -1.680 D 55 53 3 56 3 0 0 60 78 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 1 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 56 - A - - MR 57 56 3 59 3 1 1 60 79 -8.166 -0.021 -6.484 1.615 -1.968 -1.641 -1.473 D 58 56 3 59 3 0 0 58 77 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 55 - A - - MR 60 59 3 62 3 1 1 59 78 -8.166 -0.021 -6.484 1.615 -1.968 -1.641 -1.473 D 61 59 3 62 3 0 0 57 76 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 54 - A - - MR 63 62 3 65 3 1 1 58 77 -8.166 -0.021 -6.484 1.615 -1.968 -1.641 -1.473 D 64 62 3 65 3 0 0 56 75 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 53 - A - - MR 66 65 3 68 5 1 1 57 76 -6.918 -0.044 -6.734 -6.946 -7.838 1.615 -1.968 -1.641 -1.473 D 67 65 3 68 5 0 0 56 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 52 G C - - MP 69 68 3 73 6 2 2 56 75 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -4.350 -2.909 -4.422 0.454 -4.681 -4.534 -0.140 -4.630 -4.060 3.528 -4.427 -0.597 -0.538 -4.208 -2.158 -3.305 ML 70 68 3 73 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 51 A U - - MP 75 74 6 79 6 2 2 54 73 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 76 74 6 79 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 50 C G - - MP 81 80 6 85 6 2 2 52 71 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -4.150 -4.016 -3.904 -0.289 -2.717 -4.367 3.405 -3.486 -3.943 0.018 -4.244 -1.959 0.833 -4.243 -0.417 -2.798 ML 82 80 6 85 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 49 U A - - MP 87 86 6 91 6 2 2 50 69 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 88 86 6 91 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 48 u g - - MP 93 92 6 97 6 2 2 48 67 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.692 -3.594 -3.484 0.030 -2.375 -3.977 1.899 -3.106 -3.521 0.296 -3.856 -1.607 1.111 -3.813 2.699 -2.413 ML 94 92 6 97 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 47 C G - - MP 99 98 6 103 6 2 2 46 65 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -4.150 -4.016 -3.904 -0.289 -2.717 -4.367 3.405 -3.486 -3.943 0.018 -4.244 -1.959 0.833 -4.243 -0.417 -2.798 ML 100 98 6 103 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 46 A U - - MP 105 104 6 109 6 2 2 44 63 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 106 104 6 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 45 g u - - MP 111 110 6 115 6 2 2 42 61 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.369 -2.243 -3.513 1.272 -4.025 -4.763 0.318 -3.573 -3.249 1.689 -3.759 2.764 -0.044 -4.014 -1.621 -2.271 ML 112 110 6 115 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 44 U A - - MP 117 116 6 121 4 2 2 40 59 -6.664 -7.909 -0.093 -4.363 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 118 116 6 121 4 1 1 39 58 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 39 58 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 37 56 -12.737 -14.007 -2.036 -0.404 IL 121 121 5 121 4 1 1 39 58 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 43 - A - - MR 123 122 6 125 5 1 1 38 57 -6.918 -0.044 -6.734 -6.946 -7.838 1.615 -1.968 -1.641 -1.473 D 124 122 6 125 5 0 0 37 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 42 C G - - MP 126 125 3 130 6 2 2 37 56 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -4.150 -4.016 -3.904 -0.289 -2.717 -4.367 3.405 -3.486 -3.943 0.018 -4.244 -1.959 0.833 -4.243 -0.417 -2.798 ML 127 125 3 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 41 C G - - MP 132 131 6 136 6 2 2 35 54 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -4.150 -4.016 -3.904 -0.289 -2.717 -4.367 3.405 -3.486 -3.943 0.018 -4.244 -1.959 0.833 -4.243 -0.417 -2.798 ML 133 131 6 136 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 40 A U - - MP 138 137 6 142 4 2 2 33 52 -6.664 -7.909 -0.093 -4.363 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 139 137 6 142 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 39 - C - - MR 144 143 6 146 5 1 1 31 50 -6.918 -0.044 -6.734 -6.946 -7.838 -1.263 1.465 -2.066 -0.776 D 145 143 6 146 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 38 U A - - MP 147 146 3 151 6 2 2 30 49 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 148 146 3 151 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 37 g u - - MP 153 152 6 157 6 2 2 28 47 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.369 -2.243 -3.513 1.272 -4.025 -4.763 0.318 -3.573 -3.249 1.689 -3.759 2.764 -0.044 -4.014 -1.621 -2.271 ML 154 152 6 157 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 36 A U - - MP 159 158 6 163 6 2 2 26 45 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.478 -2.595 -3.516 3.080 -3.702 -4.741 0.580 -3.576 -3.424 1.419 -3.956 -0.127 0.160 -3.979 -1.364 -2.372 ML 160 158 6 163 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 35 U A - - MP 165 164 6 169 6 2 2 24 43 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 166 164 6 169 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 34 U A - - MP 171 170 6 175 6 2 2 22 41 -9.028 -8.967 -0.022 -7.743 -8.023 -8.418 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 172 170 6 175 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 33 U A - - MP 177 176 6 181 4 2 2 20 39 -6.728 -6.935 -0.062 -5.350 -3.793 -3.600 -3.673 0.073 -2.705 -4.272 1.612 -3.371 -3.682 0.397 -4.074 -1.511 3.096 -3.957 -0.391 -2.542 ML 178 176 6 181 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - G - - - ML 183 182 6 185 3 1 1 16 35 -7.762 -0.024 -6.416 -1.149 -2.295 1.601 -1.680 D 184 182 6 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - G - - - ML 186 185 3 188 3 1 1 15 33 -7.762 -0.024 -6.416 -1.149 -2.295 1.601 -1.680 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 189 188 3 191 3 1 1 13 32 -7.762 -0.024 -6.416 1.615 -1.968 -1.641 -1.473 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - A - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 1.615 -1.968 -1.641 -1.473 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-6128 ACC RF03514 DESC mir-6128 microRNA precursor family LENG 64 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 12:12:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03514/CM NSEQ 3 EFFN 2.258789 CKSUM 2961753882 STATS LOCAL MSV -8.0959 0.71925 STATS LOCAL VITERBI -8.8717 0.71925 STATS LOCAL FORWARD -3.4403 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.11551 1.84289 1.41826 1.30284 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 0.00000 * 1 0.16185 3.19914 2.92717 2.89888 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 2 1.90193 2.85903 0.31692 2.73329 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 3 0.35869 2.72443 1.79716 2.65851 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 4 0.35874 2.72424 1.79712 2.65823 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 5 2.92601 1.86985 2.67051 0.32431 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 6 2.92509 1.86980 2.67012 0.32443 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 7 0.35902 2.72322 1.79695 2.65674 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 8 2.92346 1.86972 2.66941 0.32463 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 9 0.16185 3.19914 2.92717 2.89888 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 10 2.65888 3.53098 0.15556 3.10651 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 11 2.55755 3.19656 0.17658 3.13573 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 12 0.35901 2.72328 1.79696 2.65683 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 13 3.15541 0.25047 2.92499 2.07722 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 14 2.92476 1.86978 2.66997 0.32447 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 15 2.90341 1.55699 2.68934 0.40576 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 16 3.15352 0.25069 2.92410 2.07689 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 17 0.35916 2.72274 1.79687 2.65603 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 18 1.90089 2.85694 0.31754 2.73052 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 19 2.92193 1.86965 2.66875 0.32482 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 20 3.12327 0.25422 2.90978 2.07162 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 21 3.13820 0.25246 2.91688 2.07424 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 22 0.35978 2.72052 1.79650 2.65279 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 23 2.90075 1.86861 2.65954 0.32753 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 24 1.89848 2.85210 0.31900 2.72410 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 25 0.35977 2.72057 1.79651 2.65287 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 26 2.91963 1.86954 2.66776 0.32512 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 27 2.92056 1.86958 2.66816 0.32500 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 28 2.92085 1.86960 2.66828 0.32496 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 29 2.65888 3.53098 0.15556 3.10651 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 30 2.65888 3.53098 0.15556 3.10651 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 31 0.16185 3.19914 2.92717 2.89888 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 32 0.16185 3.19914 2.92717 2.89888 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 33 0.36868 2.85159 1.70653 2.67208 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 34 0.36862 2.85185 1.70656 2.67239 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 35 0.36855 2.85218 1.70659 2.67281 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 36 2.88309 2.08624 2.53515 0.30025 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 37 2.94345 1.87443 2.65754 0.32330 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 38 0.36811 2.85409 1.70676 2.67517 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 39 2.79762 0.21147 3.37316 2.35002 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 40 2.88301 2.08623 2.53512 0.30026 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 41 2.35408 3.09209 0.21652 2.91328 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 42 2.35496 3.09326 0.21626 2.91470 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 43 0.16185 3.19914 2.92717 2.89888 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 44 0.36863 2.85181 1.70655 2.67235 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 45 2.94093 1.87431 2.65650 0.32362 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 46 2.88271 2.08620 2.53501 0.30030 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 47 2.35377 3.09166 0.21662 2.91276 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 48 2.09430 2.86640 0.28888 2.64742 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 49 0.36810 2.85410 1.70676 2.67518 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 50 2.35594 3.09458 0.21596 2.91631 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 51 2.89031 2.08706 2.53782 0.29928 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 52 3.35913 0.20673 3.03954 2.26203 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 53 0.16185 3.19914 2.92717 2.89888 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 54 0.16185 3.19914 2.92717 2.89888 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 55 0.16185 3.19914 2.92717 2.89888 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 56 0.16185 3.19914 2.92717 2.89888 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 57 0.36843 2.85270 1.70663 2.67345 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 58 2.88425 2.08637 2.53558 0.30009 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 59 0.36817 2.85380 1.70673 2.67481 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 60 0.36800 2.85457 1.70680 2.67576 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 61 2.88912 2.08692 2.53738 0.29944 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 62 2.89177 2.08722 2.53836 0.29909 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 63 2.95525 1.87500 2.66242 0.32186 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 64 2.65888 3.53098 0.15556 3.10651 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.02284 3.79078 * 1.46634 0.26236 0.00000 * //