INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4000 ACC RF03485 DESC mir-4000 microRNA precursor family STATES 166 NODES 37 CLEN 54 W 68 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 11:53:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03485/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 4.467773 CKSUM 2897365654 NULL 0.000 0.000 0.000 0.000 GA 58.00 TC 68.20 NC 42.10 EFP7GF -9.4307 0.72329 ECMLC 0.64832 -5.05354 3.69050 1600000 347676 0.003451 ECMGC 0.45812 -17.51097 -3.49357 1600000 246013 0.001626 ECMLI 0.61693 -4.47640 4.36242 1600000 280131 0.004284 ECMGI 0.46421 -13.76502 -1.26541 1600000 132435 0.003020 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 68 88 -7.731 -7.938 -0.031 -6.352 IL 1 1 2 1 4 1 7 73 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 5 68 88 -9.056 -0.441 -1.934 -1.411 0.499 -2.245 1.000 D 4 2 3 5 3 0 4 67 87 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 8 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 54 - A - - MR 6 5 3 8 3 1 8 68 87 -8.630 -0.015 -6.947 1.075 -0.195 -1.336 -0.680 D 7 5 3 8 3 0 2 66 85 -8.548 -3.726 -0.118 IR 8 8 3 8 3 1 7 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 53 - c - - MR 9 8 3 11 5 1 8 67 86 -7.352 -0.033 -7.167 -7.379 -8.271 -0.682 0.850 -0.204 -0.503 D 10 8 3 11 5 0 2 66 85 -6.908 -0.204 -4.535 -5.966 -3.960 IR 11 11 3 11 5 1 4 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 52 G C - - MP 12 11 3 16 6 2 9 66 85 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -6.139 -3.786 -6.532 -0.804 -7.146 -5.208 -2.168 -6.762 -5.134 3.848 -5.397 -1.569 -2.529 -5.349 -4.308 -5.390 ML 13 11 3 16 6 1 2 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 4 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 51 A U - - MP 18 17 6 22 6 2 8 64 83 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.210 -3.978 -4.999 3.807 -6.208 -7.475 -1.822 -4.948 -4.988 -0.476 -5.596 -1.294 -2.212 -6.342 -3.748 -3.856 ML 19 17 6 22 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 3 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 50 A U - - MP 24 23 6 28 6 2 8 62 81 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.210 -3.978 -4.999 3.807 -6.208 -7.475 -1.822 -4.948 -4.988 -0.476 -5.596 -1.294 -2.212 -6.342 -3.748 -3.856 ML 25 23 6 28 6 1 2 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 3 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 49 A U - - MP 30 29 6 34 6 2 8 60 79 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.210 -3.978 -4.999 3.807 -6.208 -7.475 -1.822 -4.948 -4.988 -0.476 -5.596 -1.294 -2.212 -6.342 -3.748 -3.856 ML 31 29 6 34 6 1 2 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 2 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 48 C G - - MP 36 35 6 40 6 2 7 58 77 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.058 -5.179 -4.632 -1.416 2.231 -4.937 3.059 -4.036 -4.692 -1.320 -4.923 -3.338 0.230 -5.044 -0.880 -3.524 ML 37 35 6 40 6 1 2 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 2 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 47 u g - - MP 42 41 6 46 6 2 6 56 75 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -4.795 -4.848 -4.477 -1.096 -3.148 -4.869 1.173 -3.957 -4.518 -0.972 -4.802 -2.928 2.500 -4.845 2.688 -3.366 ML 43 41 6 46 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 46 U A - - MP 48 47 6 52 6 2 5 54 73 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -6.203 -6.051 -5.803 -2.271 -4.413 -6.179 -0.090 -5.216 -5.795 -2.217 -6.077 -3.915 3.817 -6.236 -2.039 -4.272 ML 49 47 6 52 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 45 G C - - MP 54 53 6 58 4 2 3 52 71 -7.731 -7.938 -0.031 -6.352 -4.628 -3.143 -4.667 0.363 -5.811 -5.257 -1.038 -5.025 -4.459 3.219 -4.872 1.966 -1.277 -4.688 -3.035 -3.492 ML 55 53 6 58 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 52 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 51 70 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 1 54 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 60 59 6 62 3 1 2 49 68 -8.704 -0.012 -7.358 -3.460 1.883 -4.223 -2.580 D 61 59 6 62 3 0 0 48 67 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 63 62 3 65 3 1 2 48 67 -9.056 -0.011 -7.373 1.032 -2.191 0.506 -1.663 D 64 62 3 65 3 0 0 47 66 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 44 - A - - MR 66 65 3 68 3 1 1 47 66 -9.056 -0.011 -7.373 1.032 -2.191 0.506 -1.663 D 67 65 3 68 3 0 0 46 65 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 43 - a - - MR 69 68 3 71 5 1 1 46 65 -7.757 -0.025 -7.573 -7.785 -8.676 0.863 -1.310 -1.482 0.506 D 70 68 3 71 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 42 g c - - MP 72 71 3 76 6 2 2 45 64 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -2.693 -0.043 -2.803 0.885 -2.743 -3.598 1.152 -3.078 -2.904 2.238 -3.412 -0.566 1.455 -2.892 0.631 -1.914 ML 73 71 3 76 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 41 G C - - MP 78 77 6 82 6 2 2 43 62 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.067 -3.339 -5.130 0.013 -6.186 -5.093 -1.302 -5.560 -4.721 3.583 -5.048 0.831 -1.564 -4.776 -3.342 -4.003 ML 79 77 6 82 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 40 a u - - MP 84 83 6 88 6 2 2 41 60 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -4.372 -3.126 -4.526 2.972 -5.930 -6.696 -1.510 -4.628 -4.203 0.490 -4.822 2.456 -1.633 -5.415 -3.389 -3.206 ML 85 83 6 88 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 39 A U - - MP 90 89 6 94 4 2 2 39 58 -7.731 -7.938 -0.031 -6.352 -5.210 -3.978 -4.999 3.807 -6.208 -7.475 -1.822 -4.948 -4.988 -0.476 -5.596 -1.294 -2.212 -6.342 -3.748 -3.856 ML 91 89 6 94 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - c - - - ML 96 95 6 98 5 1 1 37 56 -7.757 -0.025 -7.573 -7.785 -8.676 0.573 0.712 -1.758 -0.789 D 97 95 6 98 5 0 0 36 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 38 g u - - MP 99 98 3 103 6 2 2 36 55 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -4.365 -3.166 -4.533 0.396 -5.234 -6.268 -0.933 2.284 -4.168 0.194 -4.727 2.836 -1.332 -5.381 -2.841 -3.216 ML 100 98 3 103 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 37 g c - - MP 105 104 6 109 6 2 2 34 53 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -4.014 -2.798 -3.985 2.292 -4.941 -4.888 -0.327 -4.414 -4.087 2.710 -4.508 1.140 -0.568 -4.095 -2.279 -2.874 ML 106 104 6 109 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 36 G C - - MP 111 110 6 115 4 2 2 32 51 -7.731 -7.938 -0.031 -6.352 -6.139 -3.786 -6.532 -0.804 -7.146 -5.208 -2.168 -6.762 -5.134 3.848 -5.397 -1.569 -2.529 -5.349 -4.308 -5.390 ML 112 110 6 115 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - c - - - ML 117 116 6 119 3 1 1 29 48 -9.056 -0.011 -7.373 -0.942 0.706 0.366 -0.839 D 118 116 6 119 3 0 0 28 47 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 35 - u - - MR 120 119 3 122 5 1 1 28 47 -7.757 -0.025 -7.573 -7.785 -8.676 -1.411 0.499 -2.245 1.000 D 121 119 3 122 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 34 C G - - MP 123 122 3 127 6 2 2 27 46 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -6.190 -6.234 -5.576 -2.405 -4.032 -5.771 3.851 -5.018 -5.736 -2.316 -5.762 -4.269 -0.750 -6.145 -1.837 -4.541 ML 124 122 3 127 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 33 U A - - MP 129 128 6 133 6 2 2 25 44 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -6.203 -6.051 -5.803 -2.271 -4.413 -6.179 -0.090 -5.216 -5.795 -2.217 -6.077 -3.915 3.817 -6.236 -2.039 -4.272 ML 130 128 6 133 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 32 g c - - MP 135 134 6 139 6 2 2 23 42 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -3.917 -3.289 -3.894 0.385 -3.431 -4.623 1.017 -3.855 -3.917 2.456 -4.356 -1.016 2.443 -4.036 -1.029 -2.767 ML 136 134 6 139 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 31 G C - - MP 141 140 6 145 4 2 2 21 40 -7.731 -7.938 -0.031 -6.352 -4.525 -3.181 -4.537 0.218 -5.032 -4.786 -0.534 -4.920 -4.405 3.274 -4.751 -0.893 -0.876 1.454 -2.497 -3.492 ML 142 140 6 145 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 147 146 6 149 3 1 1 18 37 -8.704 -0.012 -7.358 -2.878 -2.649 -3.656 1.858 D 148 146 6 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - u - - - ML 150 149 3 152 3 1 1 17 36 -8.704 -0.012 -7.358 -0.101 -0.281 -1.502 0.920 D 151 149 3 152 3 0 0 17 35 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - c - - - ML 153 152 3 155 3 1 1 16 34 -8.704 -0.012 -7.358 -0.942 0.706 0.366 -0.839 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - a - - - ML 156 155 3 158 3 1 1 14 33 -8.704 -0.012 -7.358 0.492 -0.291 -1.306 0.456 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - A - - - ML 159 158 3 161 3 1 1 13 31 -8.704 -0.012 -7.358 1.904 -3.827 -3.331 -3.512 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - u - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 0.429 -1.098 -0.371 0.499 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4000 ACC RF03485 DESC mir-4000 microRNA precursor family LENG 54 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 11:53:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03485/CM NSEQ 5 EFFN 4.780273 CKSUM 2897365654 STATS LOCAL MSV -7.5485 0.72329 STATS LOCAL VITERBI -8.3808 0.72329 STATS LOCAL FORWARD -3.4286 0.72329 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38587 1.43524 1.47776 1.25988 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 2.41806 1.02954 3.00052 0.68523 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 3.12583 4.01248 0.08508 3.93359 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 0.12110 3.87439 2.66804 3.73385 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 0.12001 3.88859 2.67175 3.75143 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 0.11947 3.89574 2.67360 3.76032 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 3.51720 0.19001 3.37765 2.21425 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 3.32990 1.92123 3.16154 0.25436 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 4.09244 2.83388 3.96920 0.09913 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 9 2.40524 3.38004 0.18027 3.20231 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 3.87877 0.07410 4.39619 3.25921 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 0.66061 2.97056 1.02533 2.61035 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 1.63326 1.84977 1.04251 1.22124 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 2.64712 3.55750 0.14183 3.41543 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 0.67705 3.70494 0.83393 3.41289 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 0.11810 3.91398 2.67828 3.78304 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 16 0.98219 0.87667 2.65341 1.97376 16 c - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 2.39327 1.06844 0.64209 3.24580 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 18 1.11763 2.90138 0.59309 2.72748 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 19 3.18069 4.09649 0.07870 4.04584 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 20 2.08787 0.87788 1.11838 2.01309 20 c - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 21 4.17059 0.09191 4.04133 2.90409 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 22 4.12846 2.83825 3.98988 0.09776 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 2.36554 2.01407 0.95947 0.94273 23 u - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 2.50769 3.07838 0.43631 1.48682 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 3.46661 3.29602 4.00692 0.09041 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 1.46098 1.58266 2.45521 0.74083 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 2.08787 0.87788 1.11838 2.01309 27 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 1.04038 1.58842 2.31421 1.06832 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 29 0.06082 4.12594 3.77647 3.91423 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 30 1.08561 2.16998 1.64346 1.03616 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 31 3.22340 0.22692 2.90046 2.22380 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 32 1.01607 1.02524 1.84822 2.10573 32 a - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 33 0.11106 4.19724 2.67164 3.86632 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 34 3.19743 4.21941 0.07747 3.96508 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 35 2.41806 1.02954 3.00052 0.68523 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 36 4.17765 0.09627 3.95106 2.86101 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 37 2.96821 0.86485 2.70193 0.77563 37 u - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 38 3.44007 2.57632 3.14587 0.16387 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 39 3.99653 3.06723 3.71990 0.09339 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 40 3.60650 2.40394 3.48144 0.16049 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 41 3.63744 0.27200 3.38559 1.72614 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 42 1.61416 0.98448 1.39073 1.72363 42 c - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 43 0.77770 2.32878 2.44738 1.03113 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 44 0.66061 2.97056 1.02533 2.61035 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 45 3.41786 0.52458 3.18804 1.09613 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 46 0.11289 4.16419 2.66545 3.83324 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 47 0.99640 3.32101 0.59897 3.09444 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 48 0.98282 3.52813 0.58187 3.28249 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 49 3.96763 3.06173 3.70576 0.09465 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 50 3.96797 3.06180 3.70593 0.09463 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 51 3.96923 3.06204 3.70655 0.09458 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 52 4.16115 0.09692 3.94247 2.85798 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.34239 4.27667 1.28720 1.46634 0.26236 1.09861 0.40547 53 1.89583 0.77413 1.52453 1.76622 53 c - - : 1.38629 1.38629 1.38629 1.38629 0.03837 3.97265 3.97265 1.46634 0.26236 3.08534 0.04679 54 0.62732 1.51702 2.34654 1.89103 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.01937 3.95364 * 1.46634 0.26236 0.00000 * //