INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4766 ACC RF03474 DESC mir-4766 microRNA precursor family STATES 172 NODES 36 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 19:08:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03474/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.871094 CKSUM 1931052957 NULL 0.000 0.000 0.000 0.000 GA 72.00 TC 72.50 NC 71.30 EFP7GF -5.6711 0.72930 ECMLC 0.62486 -5.51976 3.99185 1600000 457476 0.002623 ECMGC 0.44597 -15.06346 -0.22348 1600000 299444 0.001336 ECMLI 0.61583 -4.29869 4.84553 1600000 334824 0.003584 ECMGI 0.47792 -10.65901 2.22354 1600000 188768 0.002119 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 90 -6.842 -8.088 -0.082 -4.541 IL 1 1 2 1 4 1 1 72 91 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 56 - G - - MR 3 2 3 5 3 1 2 71 90 -8.334 -0.019 -6.652 -1.533 -2.746 1.712 -2.132 D 4 2 3 5 3 0 0 69 88 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 1 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 55 - A - - MR 6 5 3 8 5 1 1 70 89 -7.074 -0.040 -6.889 -7.102 -7.993 1.709 -2.327 -1.963 -1.865 D 7 5 3 8 5 0 0 68 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 54 U A - - MP 9 8 3 13 6 2 3 69 88 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 10 8 3 13 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 53 C G - - MP 15 14 6 19 6 2 2 67 86 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 16 14 6 19 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 52 u g - - MP 21 20 6 25 6 2 2 65 84 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.047 -3.966 -3.759 -0.305 -2.530 -4.191 1.755 -3.299 -3.799 -0.104 -4.096 -1.968 0.912 -4.136 2.977 -2.673 ML 22 20 6 25 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 51 G U - - MP 27 26 6 31 6 2 2 63 82 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.589 -2.369 -3.754 1.150 -4.448 -5.172 -0.058 -3.780 -3.423 1.394 -3.942 3.054 -0.417 -4.386 -2.000 -2.460 ML 28 26 6 31 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 50 A U - - MP 33 32 6 37 6 2 2 61 80 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 34 32 6 37 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 49 A U - - MP 39 38 6 43 6 2 2 59 78 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 40 38 6 43 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 48 A U - - MP 45 44 6 49 6 2 2 57 76 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 46 44 6 49 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 47 G C - - MP 51 50 6 55 6 2 2 55 74 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 52 50 6 55 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 46 A U - - MP 57 56 6 61 6 2 2 53 72 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 58 56 6 61 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 45 G C - - MP 63 62 6 67 6 2 2 51 70 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 64 62 6 67 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 44 C G - - MP 69 68 6 73 6 2 2 49 68 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.509 -4.412 -4.206 -0.647 -2.933 -4.623 3.538 -3.739 -4.254 -0.401 -4.519 -2.358 0.586 -4.581 -0.638 -3.095 ML 70 68 6 73 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 43 a u - - MP 75 74 6 79 6 2 2 47 66 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -2.956 1.483 -3.096 2.288 -3.424 -4.128 0.527 -3.321 -3.021 1.663 -3.540 0.060 0.273 -3.372 -1.259 -2.052 ML 76 74 6 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 42 G U - - MP 81 80 6 85 6 2 2 45 64 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.589 -2.369 -3.754 1.150 -4.448 -5.172 -0.058 -3.780 -3.423 1.394 -3.942 3.054 -0.417 -4.386 -2.000 -2.460 ML 82 80 6 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 41 U A - - MP 87 86 6 91 6 2 2 43 62 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 88 86 6 91 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 40 U A - - MP 93 92 6 97 6 2 2 41 60 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 94 92 6 97 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 39 G C - - MP 99 98 6 103 4 2 2 39 58 -6.924 -7.131 -0.054 -5.545 -4.702 -3.075 -4.797 0.227 -5.177 -4.678 -0.551 -5.037 -4.302 3.629 -4.642 -0.772 -0.937 -4.442 -2.586 -3.675 ML 100 98 6 103 4 1 1 39 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 41 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - G - - - ML 105 104 6 107 3 1 1 36 55 -8.334 -0.019 -6.652 -1.533 -2.746 1.712 -2.132 D 106 104 6 107 3 0 0 35 54 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 38 - G - - MR 108 107 3 110 5 1 1 35 54 -7.074 -0.040 -6.889 -7.102 -7.993 -1.533 -2.746 1.712 -2.132 D 109 107 3 110 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 37 U A - - MP 111 110 3 115 6 2 2 34 53 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 112 110 3 115 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 36 g c - - MP 117 116 6 121 6 2 2 32 51 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -3.675 -2.515 -3.729 1.000 -4.329 -4.497 0.126 -4.020 -3.644 2.958 -4.085 1.632 -0.158 -3.833 -1.829 -2.607 ML 118 116 6 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 35 U A - - MP 123 122 6 127 6 2 2 30 49 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 124 122 6 127 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 34 U A - - MP 129 128 6 133 6 2 2 28 47 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 130 128 6 133 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 33 U A - - MP 135 134 6 139 6 2 2 26 45 -9.098 -9.038 -0.021 -7.814 -8.094 -8.489 -4.147 -3.971 -3.990 -0.269 -2.942 -4.559 1.386 -3.634 -3.996 -0.009 -4.371 -1.872 3.307 -4.301 -0.619 -2.824 ML 136 134 6 139 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 32 A U - - MP 141 140 6 145 4 2 2 24 43 -6.924 -7.131 -0.054 -5.545 -3.758 -2.798 -3.779 3.310 -4.100 -5.159 0.197 -3.823 -3.672 1.115 -4.218 -0.279 -0.220 -4.353 -1.744 -2.615 ML 142 140 6 145 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - U - - - ML 147 146 6 149 3 1 1 21 40 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 148 146 6 149 3 0 0 20 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - U - - - ML 150 149 3 152 3 1 1 20 39 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 151 149 3 152 3 0 0 19 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - U - - - ML 153 152 3 155 3 1 1 19 37 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - U - - - ML 156 155 3 158 3 1 1 18 36 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - U - - - ML 159 158 3 161 3 1 1 16 35 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - U - - - ML 162 161 3 164 3 1 1 15 33 -7.942 -0.021 -6.596 -1.445 -1.448 -2.176 1.606 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - A - - - ML 165 164 3 167 3 1 1 13 31 -7.942 -0.021 -6.596 1.709 -2.327 -1.963 -1.865 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - C - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 -1.687 1.609 -2.509 -1.112 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4766 ACC RF03474 DESC mir-4766 microRNA precursor family LENG 56 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 19:08:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03474/CM NSEQ 2 EFFN 1.917969 CKSUM 1931052957 STATS LOCAL MSV -8.4622 0.72930 STATS LOCAL VITERBI -8.9834 0.72930 STATS LOCAL FORWARD -3.0549 0.72930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44312 1.65645 1.36975 1.14312 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.73109 1.73636 2.45977 0.39566 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.97543 0.30022 2.72542 1.94629 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.74130 1.47598 2.50527 0.46951 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.82713 2.67704 0.36627 2.56336 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.44212 2.52018 1.65254 2.46136 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.44214 2.52010 1.65254 2.46125 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.44218 2.52000 1.65253 2.46109 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.44697 3.01488 0.20769 2.95774 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.44225 2.51980 1.65251 2.46079 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.44662 3.01450 0.20779 2.95720 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.97740 0.29995 2.72629 1.94661 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.69077 2.25826 1.30118 2.10320 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.82669 2.67625 0.36658 2.56226 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.73751 1.73650 2.46231 0.39468 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.73742 1.73650 2.46227 0.39469 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.44605 3.01390 0.20794 2.95635 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.47554 3.32031 0.19303 2.89522 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.73696 1.73649 2.46209 0.39476 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.92088 2.55297 0.37563 2.42116 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.74083 1.73658 2.46361 0.39418 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.74084 1.73658 2.46362 0.39418 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.74049 1.73657 2.46348 0.39423 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.44205 2.52037 1.65256 2.46165 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.41060 2.40905 2.91885 0.26613 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.41060 2.40905 2.91885 0.26613 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.41060 2.40905 2.91885 0.26613 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41060 2.40905 2.91885 0.26613 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.41060 2.40905 2.91885 0.26613 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.41060 2.40905 2.91885 0.26613 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.19610 3.02411 2.76959 2.70635 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.58597 0.26242 3.15679 2.18104 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.69122 1.92224 2.33461 0.37241 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.44806 2.64361 1.57339 2.49267 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.44792 2.64408 1.57340 2.49329 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.44775 2.64467 1.57342 2.49407 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.65474 0.68858 2.36683 1.09776 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.44725 2.64638 1.57348 2.49631 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.47554 3.32031 0.19303 2.89522 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.16517 0.24441 2.84496 2.14993 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.44860 2.64176 1.57333 2.49024 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.44859 2.64182 1.57333 2.49031 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.77621 1.72861 2.47946 0.39096 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.32427 0.96357 2.06123 0.93313 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.22081 2.89288 0.25978 2.73578 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.16686 0.24422 2.84566 2.15026 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.68912 1.92207 2.33390 0.37275 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.16805 0.24409 2.84616 2.15049 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.68994 1.92214 2.33418 0.37261 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.69049 1.92218 2.33436 0.37252 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.69118 1.92224 2.33459 0.37241 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.78047 1.72869 2.48110 0.39034 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.99041 2.68053 0.33958 2.49178 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.22390 2.89673 0.25866 2.74067 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.44752 2.64547 1.57345 2.49511 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.19610 3.02411 2.76959 2.70635 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.47554 3.32031 0.19303 2.89522 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //