INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4677 ACC RF03462 DESC mir-4677 microRNA precursor family STATES 181 NODES 41 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 13:12:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03462/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.613281 CKSUM 2816934808 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 80.70 NC 79.80 EFP7GF -5.2293 0.72710 ECMLC 0.63962 -5.12963 4.01396 1600000 416040 0.002884 ECMGC 0.48685 -14.74317 -2.47944 1600000 156687 0.002553 ECMLI 0.65333 -3.31224 4.94682 1600000 264606 0.004535 ECMGI 0.51462 -10.62674 0.32292 1600000 112015 0.003571 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -6.812 -7.019 -0.059 -5.433 IL 1 1 2 1 4 1 10 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 10 75 95 -7.839 -0.022 -6.493 -1.257 -1.295 -1.978 1.546 D 4 2 3 5 3 0 5 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 9 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 9 74 93 -8.238 -0.020 -6.555 -1.257 -1.295 -1.978 1.546 D 7 5 3 8 3 0 4 73 92 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 8 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 59 - U - - MR 9 8 3 11 3 1 8 73 92 -8.238 -0.020 -6.555 -1.257 -1.295 -1.978 1.546 D 10 8 3 11 3 0 2 71 91 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 7 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 58 - C - - MR 12 11 3 14 3 1 8 72 91 -8.238 -0.020 -6.555 -1.441 1.532 -2.253 -0.917 D 13 11 3 14 3 0 2 70 90 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 6 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 57 - A - - MR 15 14 3 17 3 1 7 71 90 -8.238 -0.020 -6.555 1.659 -2.120 -1.777 -1.639 D 16 14 3 17 3 0 1 69 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 6 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 56 - U - - MR 18 17 3 20 5 1 7 70 89 -6.984 -0.042 -6.800 -7.012 -7.904 -1.257 -1.295 -1.978 1.546 D 19 17 3 20 5 0 1 68 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 4 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 55 G C - - MP 21 20 3 25 6 2 8 69 88 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.500 -2.979 -4.580 0.358 -4.892 -4.597 -0.316 -4.803 -4.165 3.574 -4.521 -0.671 -0.708 -4.308 -2.340 -3.461 ML 22 20 3 25 6 1 3 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 2 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 54 U A - - MP 27 26 6 31 6 2 8 67 86 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 28 26 6 31 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 53 U A - - MP 33 32 6 37 6 2 7 65 84 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 34 32 6 37 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 52 C G - - MP 39 38 6 43 6 2 7 63 82 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.299 -4.181 -4.030 -0.438 -2.806 -4.474 3.465 -3.590 -4.072 -0.158 -4.359 -2.126 0.732 -4.384 -0.507 -2.921 ML 40 38 6 43 6 1 2 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 51 U A - - MP 45 44 6 49 6 2 7 61 80 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 46 44 6 49 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 50 U A - - MP 51 50 6 55 6 2 6 59 78 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 52 50 6 55 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 49 U A - - MP 57 56 6 61 6 2 6 57 76 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 58 56 6 61 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 48 G C - - MP 63 62 6 67 6 2 6 55 74 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.500 -2.979 -4.580 0.358 -4.892 -4.597 -0.316 -4.803 -4.165 3.574 -4.521 -0.671 -0.708 -4.308 -2.340 -3.461 ML 64 62 6 67 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 47 G C - - MP 69 68 6 73 6 2 5 53 72 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.500 -2.979 -4.580 0.358 -4.892 -4.597 -0.316 -4.803 -4.165 3.574 -4.521 -0.671 -0.708 -4.308 -2.340 -3.461 ML 70 68 6 73 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 2 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 2 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 46 U A - - MP 75 74 6 79 6 2 5 51 70 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 76 74 6 79 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 45 C G - - MP 81 80 6 85 6 2 5 49 68 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.299 -4.181 -4.030 -0.438 -2.806 -4.474 3.465 -3.590 -4.072 -0.158 -4.359 -2.126 0.732 -4.384 -0.507 -2.921 ML 82 80 6 85 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 44 U A - - MP 87 86 6 91 6 2 4 47 66 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.935 -3.751 -3.801 -0.065 -2.800 -4.388 1.522 -3.477 -3.809 0.230 -4.194 -1.658 3.191 -4.095 -0.482 -2.657 ML 88 86 6 91 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 43 u g - - MP 93 92 6 97 4 2 2 45 64 -6.812 -7.019 -0.059 -5.433 -3.839 -3.749 -3.598 -0.109 -2.438 -4.066 1.841 -3.186 -3.636 0.129 -3.955 -1.758 1.030 -3.948 2.827 -2.521 ML 94 92 6 97 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 45 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 44 63 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - - - ML 99 98 6 101 3 1 1 42 62 -8.238 -0.020 -6.555 -1.257 -1.295 -1.978 1.546 D 100 98 6 101 3 0 0 41 61 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 43 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 42 - U - - MR 102 101 3 104 5 1 1 41 61 -6.984 -0.042 -6.800 -7.012 -7.904 -1.257 -1.295 -1.978 1.546 D 103 101 3 104 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 41 C G - - MP 105 104 3 109 6 2 2 40 60 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.299 -4.181 -4.030 -0.438 -2.806 -4.474 3.465 -3.590 -4.072 -0.158 -4.359 -2.126 0.732 -4.384 -0.507 -2.921 ML 106 104 3 109 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 40 A U - - MP 111 110 6 115 6 2 2 38 58 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -3.591 -2.676 -3.623 3.183 -3.863 -4.909 0.425 -3.677 -3.524 1.296 -4.062 -0.186 0.006 -4.129 -1.517 -2.470 ML 112 110 6 115 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 39 G C - - MP 117 116 6 121 4 2 2 36 56 -6.812 -7.019 -0.059 -5.433 -4.500 -2.979 -4.580 0.358 -4.892 -4.597 -0.316 -4.803 -4.165 3.574 -4.521 -0.671 -0.708 -4.308 -2.340 -3.461 ML 118 116 6 121 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 36 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 35 55 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 38 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - C - - - ML 123 122 6 125 3 1 1 34 53 -8.238 -0.020 -6.555 -1.441 1.532 -2.253 -0.917 D 124 122 6 125 3 0 0 33 52 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 38 - U - - MR 126 125 3 128 5 1 1 33 52 -6.984 -0.042 -6.800 -7.012 -7.904 -1.257 -1.295 -1.978 1.546 D 127 125 3 128 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 37 C G - - MP 129 128 3 133 6 2 2 32 51 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.299 -4.181 -4.030 -0.438 -2.806 -4.474 3.465 -3.590 -4.072 -0.158 -4.359 -2.126 0.732 -4.384 -0.507 -2.921 ML 130 128 3 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 36 A U - - MP 135 134 6 139 4 2 2 30 49 -6.812 -7.019 -0.059 -5.433 -3.591 -2.676 -3.623 3.183 -3.863 -4.909 0.425 -3.677 -3.524 1.296 -4.062 -0.186 0.006 -4.129 -1.517 -2.470 ML 136 134 6 139 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - U - - - ML 141 140 6 143 5 1 1 27 46 -6.984 -0.042 -6.800 -7.012 -7.904 -1.257 -1.295 -1.978 1.546 D 142 140 6 143 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 143 143 3 143 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 35 G C - - MP 144 143 3 148 6 2 2 26 45 -9.057 -8.996 -0.022 -7.773 -8.053 -8.448 -4.500 -2.979 -4.580 0.358 -4.892 -4.597 -0.316 -4.803 -4.165 3.574 -4.521 -0.671 -0.708 -4.308 -2.340 -3.461 ML 145 143 3 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 34 A U - - MP 150 149 6 154 4 2 2 24 43 -6.812 -7.019 -0.059 -5.433 -3.591 -2.676 -3.623 3.183 -3.863 -4.909 0.425 -3.677 -3.524 1.296 -4.062 -0.186 0.006 -4.129 -1.517 -2.470 ML 151 149 6 154 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - C - - - ML 156 155 6 158 3 1 1 21 40 -7.839 -0.022 -6.493 -1.441 1.532 -2.253 -0.917 D 157 155 6 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - C - - - ML 159 158 3 161 3 1 1 20 39 -7.839 -0.022 -6.493 -1.441 1.532 -2.253 -0.917 D 160 158 3 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - U - - - ML 162 161 3 164 3 1 1 19 38 -7.839 -0.022 -6.493 -1.257 -1.295 -1.978 1.546 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - G - - - ML 165 164 3 167 3 1 1 18 36 -7.839 -0.022 -6.493 -1.312 -2.488 1.654 -1.873 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - A - - - ML 168 167 3 170 3 1 1 16 35 -7.839 -0.022 -6.493 1.659 -2.120 -1.777 -1.639 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - C - - - ML 171 170 3 173 3 1 1 15 33 -7.839 -0.022 -6.493 -1.441 1.532 -2.253 -0.917 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - C - - - ML 174 173 3 176 3 1 1 13 32 -7.839 -0.022 -6.493 -1.441 1.532 -2.253 -0.917 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - U - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.257 -1.295 -1.978 1.546 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4677 ACC RF03462 DESC mir-4677 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 13:12:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03462/CM NSEQ 2 EFFN 1.746094 CKSUM 2816934808 STATS LOCAL MSV -7.6888 0.72710 STATS LOCAL VITERBI -9.1954 0.72710 STATS LOCAL FORWARD -3.5110 0.72710 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60273 1.32892 1.47635 1.18607 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.32537 2.33897 2.82899 0.29202 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.32537 2.33897 2.82899 0.29202 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.38694 2.91387 0.22756 2.85863 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.64843 1.67222 2.35918 0.43555 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.64940 1.67223 2.35953 0.43539 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.89090 0.32903 2.62429 1.88148 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.64920 1.67223 2.35946 0.43542 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.64880 1.67223 2.35931 0.43549 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.64839 1.67222 2.35916 0.43555 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.38872 2.91567 0.22704 2.86123 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.38849 2.91544 0.22711 2.86089 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.64740 1.67222 2.35879 0.43572 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.88778 0.32951 2.62297 1.88099 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.64697 1.67222 2.35863 0.43579 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.65533 1.43547 2.40703 0.50810 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.32537 2.33897 2.82899 0.29202 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.88518 0.32991 2.62188 1.88058 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.49279 2.41831 1.58031 2.36341 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38964 2.91660 0.22678 2.86256 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.47382 0.29507 3.04054 2.09194 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.88646 0.32971 2.62242 1.88078 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.49272 2.41849 1.58032 2.36369 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.32537 2.33897 2.82899 0.29202 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38934 2.91630 0.22686 2.86213 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.49263 2.41871 1.58033 2.36404 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.47382 0.29507 3.04054 2.09194 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.47382 0.29507 3.04054 2.09194 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.32537 2.33897 2.82899 0.29202 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.37594 3.20461 0.21767 2.77894 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.21761 2.93049 2.68540 2.60378 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.47382 0.29507 3.04054 2.09194 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.47382 0.29507 3.04054 2.09194 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.32537 2.33897 2.82899 0.29202 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.58925 1.83960 2.23210 0.41743 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.05953 0.26805 2.73938 2.09063 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.59859 1.84017 2.23504 0.41575 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.15876 2.79437 0.28384 2.65223 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.32537 2.33897 2.82899 0.29202 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.08233 0.26518 2.74859 2.09509 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.59833 1.84016 2.23495 0.41580 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.15859 2.79416 0.28391 2.65196 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.32537 2.33897 2.82899 0.29202 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.93484 2.57884 0.37175 2.40610 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.49590 2.53633 1.50892 2.40049 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.15439 2.78918 0.28558 2.64546 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.49583 2.53654 1.50892 2.40078 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.07477 0.26612 2.74555 2.09362 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.07550 0.26603 2.74585 2.09376 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.49566 2.53707 1.50892 2.40150 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.49557 2.53732 1.50891 2.40185 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.49547 2.53764 1.50891 2.40228 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.15640 2.79156 0.28478 2.64856 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.49519 2.53849 1.50891 2.40345 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.49499 2.53908 1.50890 2.40425 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.08798 0.26448 2.75086 2.09618 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.32537 2.33897 2.82899 0.29202 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.21761 2.93049 2.68540 2.60378 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.47382 0.29507 3.04054 2.09194 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.32537 2.33897 2.82899 0.29202 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //