INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-6827 ACC RF03449 DESC mir-6827 microRNA precursor family STATES 169 NODES 38 CLEN 55 W 71 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 12:36:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03449/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.839844 CKSUM 2696722661 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 80.70 NC 78.10 EFP7GF -4.5209 0.73040 ECMLC 0.65707 -5.02519 3.82975 1600000 403674 0.002973 ECMGC 0.44422 -17.28539 -3.47856 1600000 184372 0.002170 ECMLI 0.62584 -3.91357 4.81483 1600000 282854 0.004242 ECMGI 0.47196 -12.55852 -0.73431 1600000 106091 0.003770 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 91 -6.911 -7.118 -0.055 -5.532 IL 1 1 2 1 4 1 14 75 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 13 71 91 -8.323 -0.019 -6.640 -1.507 -2.715 1.706 -2.102 D 4 2 3 5 3 0 7 70 90 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 11 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 55 - G - - MR 6 5 3 8 5 1 13 70 90 -7.063 -0.040 -6.879 -7.091 -7.983 -1.507 -2.715 1.706 -2.102 D 7 5 3 8 5 0 5 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 54 U A - - MP 9 8 3 13 6 2 14 69 89 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.121 -3.944 -3.967 -0.244 -2.924 -4.538 1.403 -3.615 -3.973 0.020 -4.349 -1.846 3.294 -4.275 -0.602 -2.804 ML 10 8 3 13 6 1 7 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 7 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 9 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 53 G C - - MP 15 14 6 19 6 2 13 67 87 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 16 14 6 19 6 1 7 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 52 G C - - MP 21 20 6 25 6 2 12 65 85 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 22 20 6 25 6 1 6 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 8 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 51 G C - - MP 27 26 6 31 6 2 10 63 83 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 28 26 6 31 6 1 6 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 2 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 50 a u - - MP 33 32 6 37 6 2 9 61 81 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -2.941 1.458 -3.080 2.277 -3.401 -4.106 0.547 -3.307 -3.008 1.676 -3.526 0.064 0.293 -3.352 -1.238 -2.039 ML 34 32 6 37 6 1 5 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 49 a u - - MP 39 38 6 43 4 2 7 59 79 -6.911 -7.118 -0.055 -5.532 -3.300 -2.330 -3.417 2.405 -3.973 -4.666 0.264 -3.597 -3.281 1.644 -3.817 2.007 0.003 -3.816 -1.627 -2.259 ML 40 38 6 43 4 1 4 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 1 58 78 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 5 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - C - - - ML 45 44 6 47 3 1 5 57 76 -8.323 -0.019 -6.640 -1.658 1.601 -2.479 -1.089 D 46 44 6 47 3 0 1 55 75 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 4 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 48 - U - - MR 48 47 3 50 5 1 5 56 75 -7.063 -0.040 -6.879 -7.091 -7.983 -1.422 -1.430 -2.153 1.600 D 49 47 3 50 5 0 0 54 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 C G - - MP 51 50 3 55 6 2 5 55 74 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.484 -4.384 -4.185 -0.622 -2.917 -4.605 3.530 -3.721 -4.232 -0.372 -4.500 -2.330 0.604 -4.557 -0.622 -3.074 ML 52 50 3 55 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 2 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 46 A U - - MP 57 56 6 61 4 2 3 53 72 -6.911 -7.118 -0.055 -5.532 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 58 56 6 61 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - U - - - ML 63 62 6 65 3 1 2 50 70 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 64 62 6 65 3 0 0 49 68 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - C - - MR 66 65 3 68 5 1 1 49 69 -7.063 -0.040 -6.879 -7.091 -7.983 -1.658 1.601 -2.479 -1.089 D 67 65 3 68 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 44 a u - - MP 69 68 3 73 6 2 3 48 68 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.300 -2.330 -3.417 2.405 -3.973 -4.666 0.264 -3.597 -3.281 1.644 -3.817 2.007 0.003 -3.816 -1.627 -2.259 ML 70 68 3 73 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 43 A U - - MP 75 74 6 79 6 2 2 46 66 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 76 74 6 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 42 G C - - MP 81 80 6 85 6 2 2 44 64 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 82 80 6 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 41 G U - - MP 87 86 6 91 6 2 2 42 62 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.574 -2.360 -3.737 1.160 -4.418 -5.142 -0.032 -3.766 -3.410 1.415 -3.929 3.037 -0.391 -4.360 -1.974 -2.446 ML 88 86 6 91 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 40 G C - - MP 93 92 6 97 4 2 2 40 60 -6.911 -7.118 -0.055 -5.532 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 94 92 6 97 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - U - - - ML 99 98 6 101 3 1 1 38 57 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 100 98 6 101 3 0 0 37 56 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 38 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 39 - U - - MR 102 101 3 104 5 1 1 37 56 -7.063 -0.040 -6.879 -7.091 -7.983 -1.422 -1.430 -2.153 1.600 D 103 101 3 104 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 38 C G - - MP 105 104 3 109 4 2 2 36 55 -6.911 -7.118 -0.055 -5.532 -4.484 -4.384 -4.185 -0.622 -2.917 -4.605 3.530 -3.721 -4.232 -0.372 -4.500 -2.330 0.604 -4.557 -0.622 -3.074 ML 106 104 3 109 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 3 109 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - - - ML 111 110 6 113 3 1 1 33 52 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 112 110 6 113 3 0 0 32 51 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 37 - C - - MR 114 113 3 116 5 1 1 32 51 -7.063 -0.040 -6.879 -7.091 -7.983 -1.658 1.601 -2.479 -1.089 D 115 113 3 116 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 36 G C - - MP 117 116 3 121 6 2 2 31 50 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 118 116 3 121 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 35 U A - - MP 123 122 6 127 6 2 2 29 48 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.121 -3.944 -3.967 -0.244 -2.924 -4.538 1.403 -3.615 -3.973 0.020 -4.349 -1.846 3.294 -4.275 -0.602 -2.804 ML 124 122 6 127 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 34 G C - - MP 129 128 6 133 6 2 2 27 46 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 130 128 6 133 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 33 C G - - MP 135 134 6 139 6 2 2 25 44 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.484 -4.384 -4.185 -0.622 -2.917 -4.605 3.530 -3.721 -4.232 -0.372 -4.500 -2.330 0.604 -4.557 -0.622 -3.074 ML 136 134 6 139 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 32 U A - - MP 141 140 6 145 4 2 2 23 42 -6.911 -7.118 -0.055 -5.532 -4.121 -3.944 -3.967 -0.244 -2.924 -4.538 1.403 -3.615 -3.973 0.020 -4.349 -1.846 3.294 -4.275 -0.602 -2.804 ML 142 140 6 145 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - G - - - ML 147 146 6 149 3 1 1 20 39 -7.930 -0.021 -6.584 -1.507 -2.715 1.706 -2.102 D 148 146 6 149 3 0 0 19 38 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - U - - - ML 150 149 3 152 3 1 1 19 37 -7.930 -0.021 -6.584 -1.422 -1.430 -2.153 1.600 D 151 149 3 152 3 0 0 18 37 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - C - - - ML 153 152 3 155 3 1 1 18 36 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 154 152 3 155 3 0 0 17 36 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - U - - - ML 156 155 3 158 3 1 1 16 35 -7.930 -0.021 -6.584 -1.422 -1.430 -2.153 1.600 D 157 155 3 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - C - - - ML 159 158 3 161 3 1 1 15 33 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - U - - - ML 162 161 3 164 3 1 1 13 32 -7.930 -0.021 -6.584 -1.422 -1.430 -2.153 1.600 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - G - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 -1.507 -2.715 1.706 -2.102 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-6827 ACC RF03449 DESC mir-6827 microRNA precursor family LENG 55 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 12:36:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03449/CM NSEQ 2 EFFN 1.683594 CKSUM 2696722661 STATS LOCAL MSV -7.7906 0.73040 STATS LOCAL VITERBI -9.0613 0.73040 STATS LOCAL FORWARD -3.3034 0.73040 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.84247 1.28384 1.22780 1.30318 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.33855 3.16095 0.22783 2.73506 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.61578 1.64944 2.32151 0.45160 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.36852 2.87963 0.23442 2.82693 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.36873 2.87983 0.23436 2.82722 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.36852 2.87963 0.23442 2.82693 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.77155 2.15925 1.24366 2.01019 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.06307 2.35894 0.79665 2.21414 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.43226 0.30836 2.99720 2.05899 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.85240 0.34160 2.58366 1.85682 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.51285 2.38160 1.55431 2.32815 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.29380 2.31310 2.79557 0.30234 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.06313 2.35804 0.79710 2.21287 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.51280 2.38172 1.55432 2.32834 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.36810 2.87921 0.23454 2.82633 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.77846 2.54654 0.40692 2.44126 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.36788 2.87900 0.23461 2.82602 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.29380 2.31310 2.79557 0.30234 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.85251 0.34159 2.58371 1.85684 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.29380 2.31310 2.79557 0.30234 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.36586 2.87701 0.23521 2.82312 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.61618 1.64944 2.32166 0.45153 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.36818 2.87929 0.23452 2.82644 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.85800 0.34072 2.58598 1.85768 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.61656 1.64944 2.32179 0.45147 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.33855 3.16095 0.22783 2.73506 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.29380 2.31310 2.79557 0.30234 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.43226 0.30836 2.99720 2.05899 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.29380 2.31310 2.79557 0.30234 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.43226 0.30836 2.99720 2.05899 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.29380 2.31310 2.79557 0.30234 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.33855 3.16095 0.22783 2.73506 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.51400 2.49923 1.48607 2.36985 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.13227 2.75296 0.29498 2.61526 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 3.04725 0.27399 2.71069 2.07401 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.51353 2.50061 1.48603 2.37177 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.05260 0.27330 2.71280 2.07504 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.43226 0.30836 2.99720 2.05899 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.13429 2.75531 0.29416 2.61836 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.29380 2.31310 2.79557 0.30234 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.04359 0.27446 2.70924 2.07330 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.66146 1.62414 2.35286 0.44946 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.04713 0.27401 2.71064 2.07398 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.56338 1.81045 2.19852 0.43323 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.43977 1.49324 2.16627 0.55587 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.43226 0.30836 2.99720 2.05899 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.56320 1.81044 2.19847 0.43327 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.13427 2.75530 0.29416 2.61834 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.29380 2.31310 2.79557 0.30234 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.43531 1.49349 2.16476 0.55676 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.23407 0.98263 1.96367 0.97223 50 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.04597 0.27416 2.71019 2.07376 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.04810 0.27388 2.71103 2.07417 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.05069 0.27355 2.71205 2.07467 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.51319 2.50158 1.48601 2.37312 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.33855 3.16095 0.22783 2.73506 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //