INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2954 ACC RF03446 DESC mir-2954 microRNA precursor family STATES 193 NODES 45 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 03:33:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03446/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.363281 CKSUM 3156494027 NULL 0.000 0.000 0.000 0.000 GA 96.00 TC 96.20 NC 90.20 EFP7GF -7.2914 0.72381 ECMLC 0.63445 -6.14303 3.21806 1600000 455543 0.002634 ECMGC 0.47121 -15.92063 -3.76140 1600000 123128 0.003249 ECMLI 0.60154 -4.51698 4.35095 1600000 248824 0.004823 ECMGI 0.49221 -11.43846 -0.74306 1600000 77333 0.005172 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.695 -6.902 -0.064 -5.316 IL 1 1 2 1 4 1 19 83 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 19 79 99 -7.731 -0.024 -6.385 -1.194 1.436 -1.993 -0.722 D 4 2 3 5 3 0 13 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 78 98 -7.731 -0.024 -6.385 -1.069 -1.142 -1.777 1.474 D 7 5 3 8 3 0 12 77 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 18 77 97 -7.731 -0.024 -6.385 -1.084 -2.219 1.577 -1.603 D 10 8 3 11 3 0 11 76 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 17 76 96 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 13 11 3 14 3 0 10 75 95 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 5 1 17 75 95 -6.892 -0.045 -6.708 -6.920 -7.811 -1.084 -2.219 1.577 -1.603 D 16 14 3 17 5 0 9 74 94 -4.959 -0.803 -4.221 -2.596 -2.508 IL 17 17 3 17 5 1 14 76 95 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 63 A U - - MP 18 17 3 22 6 2 17 74 94 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.436 -2.565 -3.476 3.036 -3.641 -4.679 0.638 -3.538 -3.387 1.466 -3.916 -0.106 0.218 -3.924 -1.306 -2.335 ML 19 17 3 22 6 1 11 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 11 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 5 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 13 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 13 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 62 G C - - MP 24 23 6 28 6 2 16 72 92 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 25 23 6 28 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 10 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 5 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 12 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 12 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 61 g u - - MP 30 29 6 34 6 2 15 70 90 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.334 -2.226 -3.474 1.290 -3.957 -4.699 0.378 -3.540 -3.222 1.735 -3.730 2.706 0.016 -3.956 -1.561 -2.242 ML 31 29 6 34 6 1 10 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 9 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 4 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 12 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 60 G C - - MP 36 35 6 40 6 2 13 68 88 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 37 35 6 40 6 1 9 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 8 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 4 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 10 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 11 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 59 C G - - MP 42 41 6 46 6 2 11 66 86 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 43 41 6 46 6 1 8 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 6 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 4 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 9 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 9 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 58 U A - - MP 48 47 6 52 4 2 10 64 84 -6.695 -6.902 -0.064 -5.316 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 49 47 6 52 4 1 7 64 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 5 64 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 3 63 83 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 8 66 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 54 53 6 56 3 1 8 62 81 -7.731 -0.024 -6.385 -1.069 -1.142 -1.777 1.474 D 55 53 6 56 3 0 3 60 80 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 57 56 3 59 3 1 7 61 80 -8.138 -0.022 -6.456 -1.084 -2.219 1.577 -1.603 D 58 56 3 59 3 0 2 59 79 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 6 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 57 - C - - MR 60 59 3 62 3 1 7 60 79 -8.138 -0.022 -6.456 -1.194 1.436 -1.993 -0.722 D 61 59 3 62 3 0 1 58 78 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 5 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 56 - G - - MR 63 62 3 65 3 1 6 59 78 -8.138 -0.022 -6.456 -1.084 -2.219 1.577 -1.603 D 64 62 3 65 3 0 0 57 77 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 55 - A - - MR 66 65 3 68 5 1 6 58 77 -6.892 -0.045 -6.708 -6.920 -7.811 1.596 -1.908 -1.587 -1.409 D 67 65 3 68 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 3 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 54 g u - - MP 69 68 3 73 6 2 7 57 76 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.334 -2.226 -3.474 1.290 -3.957 -4.699 0.378 -3.540 -3.222 1.735 -3.730 2.706 0.016 -3.956 -1.561 -2.242 ML 70 68 3 73 6 1 2 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 53 G C - - MP 75 74 6 79 6 2 7 55 74 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 76 74 6 79 6 1 2 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 52 G C - - MP 81 80 6 85 6 2 6 53 72 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 82 80 6 85 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 2 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 51 A U - - MP 87 86 6 91 6 2 4 51 70 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.436 -2.565 -3.476 3.036 -3.641 -4.679 0.638 -3.538 -3.387 1.466 -3.916 -0.106 0.218 -3.924 -1.306 -2.335 ML 88 86 6 91 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 2 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 2 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 50 G C - - MP 93 92 6 97 4 2 3 49 68 -6.695 -6.902 -0.064 -5.316 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 94 92 6 97 4 1 1 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 47 67 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 50 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 99 98 6 101 3 1 2 46 66 -8.138 -0.022 -6.456 1.596 -1.908 -1.587 -1.409 D 100 98 6 101 3 0 0 45 64 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 49 - A - - MR 102 101 3 104 5 1 1 45 65 -6.892 -0.045 -6.708 -6.920 -7.811 1.596 -1.908 -1.587 -1.409 D 103 101 3 104 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 48 G C - - MP 105 104 3 109 6 2 2 44 64 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 106 104 3 109 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 47 G C - - MP 111 110 6 115 6 2 2 42 62 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 112 110 6 115 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 46 A U - - MP 117 116 6 121 4 2 2 40 60 -6.695 -6.902 -0.064 -5.316 -3.436 -2.565 -3.476 3.036 -3.641 -4.679 0.638 -3.538 -3.387 1.466 -3.916 -0.106 0.218 -3.924 -1.306 -2.335 ML 118 116 6 121 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - U - - - ML 123 122 6 125 3 1 1 38 57 -8.138 -0.022 -6.456 -1.069 -1.142 -1.777 1.474 D 124 122 6 125 3 0 0 37 56 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 45 - U - - MR 126 125 3 128 5 1 1 37 56 -6.892 -0.045 -6.708 -6.920 -7.811 -1.069 -1.142 -1.777 1.474 D 127 125 3 128 5 0 0 35 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 44 U A - - MP 129 128 3 133 6 2 2 36 55 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 130 128 3 133 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 43 G C - - MP 135 134 6 139 4 2 2 34 53 -6.695 -6.902 -0.064 -5.316 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 136 134 6 139 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - U - - - ML 141 140 6 143 3 1 1 31 50 -7.731 -0.024 -6.385 -1.069 -1.142 -1.777 1.474 D 142 140 6 143 3 0 0 30 49 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - A - - - ML 144 143 3 146 3 1 1 30 49 -8.138 -0.022 -6.456 1.596 -1.908 -1.587 -1.409 D 145 143 3 146 3 0 0 29 47 -5.620 -0.734 -1.403 IL 146 146 3 146 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 42 - C - - MR 147 146 3 149 3 1 1 29 48 -8.138 -0.022 -6.456 -1.194 1.436 -1.993 -0.722 D 148 146 3 149 3 0 0 27 46 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 41 - C - - MR 150 149 3 152 3 1 1 28 47 -8.138 -0.022 -6.456 -1.194 1.436 -1.993 -0.722 D 151 149 3 152 3 0 0 26 45 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 40 - C - - MR 153 152 3 155 5 1 1 27 46 -6.892 -0.045 -6.708 -6.920 -7.811 -1.194 1.436 -1.993 -0.722 D 154 152 3 155 5 0 0 26 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 39 g u - - MP 156 155 3 160 6 2 2 26 45 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.334 -2.226 -3.474 1.290 -3.957 -4.699 0.378 -3.540 -3.222 1.735 -3.730 2.706 0.016 -3.956 -1.561 -2.242 ML 157 155 3 160 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 38 U A - - MP 162 161 6 166 6 2 2 24 43 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 163 161 6 166 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 30 37 G C - - MP 168 167 6 172 6 2 2 22 41 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 169 167 6 172 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 31 36 G C - - MP 174 173 6 178 4 2 2 20 39 -6.695 -6.902 -0.064 -5.316 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 175 173 6 178 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - A - - - ML 180 179 6 182 3 1 1 16 35 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 181 179 6 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - G - - - ML 183 182 3 185 3 1 1 15 33 -7.731 -0.024 -6.385 -1.084 -2.219 1.577 -1.603 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - C - - - ML 186 185 3 188 3 1 1 13 32 -7.731 -0.024 -6.385 -1.194 1.436 -1.993 -0.722 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.069 -1.142 -1.777 1.474 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2954 ACC RF03446 DESC mir-2954 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 03:33:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03446/CM NSEQ 2 EFFN 1.628906 CKSUM 3156494027 STATS LOCAL MSV -7.9982 0.72381 STATS LOCAL VITERBI -9.0559 0.72381 STATS LOCAL FORWARD -3.3534 0.72381 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57474 1.32224 1.23100 1.45073 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.39558 0.32068 2.95885 2.02994 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.26593 2.29030 2.76601 0.31181 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.30534 3.12204 0.23733 2.69597 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23431 2.86460 2.62614 2.53179 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.30534 3.12204 0.23733 2.69597 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.53102 2.34996 1.53173 2.29798 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.34920 2.84601 0.24167 2.79426 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.76749 2.51552 0.41735 2.41212 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.34882 2.84565 0.24178 2.79373 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.82799 0.35157 2.55169 1.83676 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.58736 1.62981 2.28860 0.46616 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.26593 2.29030 2.76601 0.31181 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.30534 3.12204 0.23733 2.69597 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 1.76609 2.51336 0.41840 2.40901 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.34766 2.84453 0.24213 2.79208 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.34847 2.84531 0.24189 2.79323 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.53106 2.34987 1.53172 2.29783 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.34846 2.84531 0.24189 2.79322 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23431 2.86460 2.62614 2.53179 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.34582 2.84276 0.24269 2.78949 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.34793 2.84479 0.24205 2.79246 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.53106 2.34988 1.53172 2.29785 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.26593 2.29030 2.76601 0.31181 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.58445 1.62983 2.28757 0.46667 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.34808 2.84493 0.24201 2.79268 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.26593 2.29030 2.76601 0.31181 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23431 2.86460 2.62614 2.53179 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.76614 2.51345 0.41836 2.40913 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.58676 1.62981 2.28839 0.46627 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.34852 2.84536 0.24187 2.79330 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.34864 2.84548 0.24183 2.79347 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23431 2.86460 2.62614 2.53179 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.30534 3.12204 0.23733 2.69597 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.39558 0.32068 2.95885 2.02994 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.26593 2.29030 2.76601 0.31181 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.01316 0.28250 2.67582 2.05483 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.01491 0.28226 2.67651 2.05517 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.53045 2.46673 1.46632 2.34315 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.63649 1.59946 2.32360 0.46448 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.39558 0.32068 2.95885 2.02994 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.39558 0.32068 2.95885 2.02994 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.39558 0.32068 2.95885 2.02994 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.01743 0.28193 2.67750 2.05566 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.53020 2.46741 1.46630 2.34411 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.26593 2.29030 2.76601 0.31181 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.53135 1.78454 2.16634 0.44945 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.01725 0.28195 2.67743 2.05562 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.01986 0.28160 2.67844 2.05613 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.23431 2.86460 2.62614 2.53179 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.01165 0.28270 2.67523 2.05454 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.53025 1.78449 2.16601 0.44966 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.01483 0.28227 2.67648 2.05515 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.01694 0.28199 2.67730 2.05556 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.63641 1.59946 2.32357 0.46449 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.23431 2.86460 2.62614 2.53179 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.30534 3.12204 0.23733 2.69597 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.39558 0.32068 2.95885 2.02994 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.53109 2.46494 1.46640 2.34062 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.10986 2.71729 0.30488 2.58391 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.00933 0.28301 2.67432 2.05408 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.62944 1.59957 2.32110 0.46564 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 3.00552 0.28352 2.67282 2.05334 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.52264 1.78414 2.16373 0.45112 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //