INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4003 ACC RF03442 DESC mir-4003 microRNA precursor family STATES 178 NODES 44 CLEN 58 W 77 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 11:58:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03442/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.211914 CKSUM 3211632346 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 75.40 NC 62.00 EFP7GF -9.8354 0.71928 ECMLC 0.61163 -5.95944 3.66845 1600000 433107 0.002771 ECMGC 0.47284 -11.95243 0.93888 1600000 177556 0.002253 ECMLI 0.58664 -4.56907 4.73893 1600000 282248 0.004252 ECMGI 0.50656 -7.66826 3.58986 1600000 119889 0.003336 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 99 -7.059 -7.266 -0.049 -5.680 IL 1 1 2 1 4 1 8 80 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 8 77 99 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 4 2 3 5 3 0 3 75 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 7 76 98 -8.068 -0.019 -6.722 -1.801 -3.054 1.769 -2.442 D 7 5 3 8 3 0 2 74 96 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 7 75 97 -8.452 -0.017 -6.770 1.761 -2.582 -2.193 -2.145 D 10 8 3 11 3 0 2 73 95 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 5 75 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - A - - MR 12 11 3 14 3 1 6 74 96 -8.452 -0.017 -6.770 1.115 -1.145 -1.213 -0.072 D 13 11 3 14 3 0 1 72 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 4 74 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - C - - MR 15 14 3 17 3 1 6 73 95 -8.452 -0.017 -6.770 -1.995 1.686 -2.825 -1.358 D 16 14 3 17 3 0 0 71 93 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 73 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 58 - A - - MR 18 17 3 20 5 1 5 72 94 -7.184 -0.037 -7.000 -7.212 -8.104 1.761 -2.582 -2.193 -2.145 D 19 17 3 20 5 0 0 70 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 3 72 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 57 G C - - MP 21 20 3 25 6 2 6 71 93 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.948 -3.193 -5.070 0.061 -5.523 -4.773 -0.836 -5.325 -4.460 3.684 -4.783 -0.901 -1.216 -4.603 -2.885 -3.943 ML 22 20 3 25 6 1 2 69 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 2 69 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 66 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 70 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 70 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 56 u a - - MP 27 26 6 31 6 2 6 69 91 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.698 -3.668 -3.611 0.000 -2.633 -4.210 1.676 -3.322 -3.628 0.217 -4.036 -1.711 2.915 -3.861 0.891 -2.517 ML 28 26 6 31 6 1 2 67 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 67 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 68 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 68 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 55 U A - - MP 33 32 6 37 6 2 6 67 89 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 34 32 6 37 6 1 1 65 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 65 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 66 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 66 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 54 G C - - MP 39 38 6 43 6 2 6 65 87 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.948 -3.193 -5.070 0.061 -5.523 -4.773 -0.836 -5.325 -4.460 3.684 -4.783 -0.901 -1.216 -4.603 -2.885 -3.943 ML 40 38 6 43 6 1 1 63 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 63 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 60 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 64 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 64 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 53 G C - - MP 45 44 6 49 6 2 5 63 85 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.948 -3.193 -5.070 0.061 -5.523 -4.773 -0.836 -5.325 -4.460 3.684 -4.783 -0.901 -1.216 -4.603 -2.885 -3.943 ML 46 44 6 49 6 1 1 61 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 61 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 58 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 62 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 62 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 52 U A - - MP 51 50 6 55 6 2 5 61 83 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 52 50 6 55 6 1 1 59 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 59 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 60 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 60 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 51 U A - - MP 57 56 6 61 6 2 4 59 81 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 58 56 6 61 6 1 1 58 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 57 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 55 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 58 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 58 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 50 A U - - MP 63 62 6 67 4 2 2 57 79 -7.059 -7.266 -0.049 -5.680 -3.982 -2.966 -3.985 3.442 -4.420 -5.502 -0.107 -4.015 -3.870 0.873 -4.427 -0.412 -0.524 -4.657 -2.047 -2.809 ML 64 62 6 67 4 1 1 57 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 56 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 55 77 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 58 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 57 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - U - - - ML 69 68 6 71 3 1 2 54 77 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 70 68 6 71 3 0 0 53 75 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 56 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - A - - - ML 72 71 3 74 3 1 1 53 76 -8.068 -0.019 -6.722 1.115 -1.145 -1.213 -0.072 D 73 71 3 74 3 0 0 52 74 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 55 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - C - - - ML 75 74 3 77 3 1 1 52 75 -8.452 -0.017 -6.770 -1.995 1.686 -2.825 -1.358 D 76 74 3 77 3 0 0 51 73 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 53 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - U - - MR 78 77 3 80 3 1 1 51 74 -8.452 -0.017 -6.770 -0.570 -0.958 -0.451 1.056 D 79 77 3 80 3 0 0 50 72 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 52 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - U - - MR 81 80 3 83 5 1 1 50 73 -7.184 -0.037 -7.000 -7.212 -8.104 -0.570 -0.958 -0.451 1.056 D 82 80 3 83 5 0 0 49 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 51 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 47 A U - - MP 84 83 3 88 6 2 2 49 72 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.982 -2.966 -3.985 3.442 -4.420 -5.502 -0.107 -4.015 -3.870 0.873 -4.427 -0.412 -0.524 -4.657 -2.047 -2.809 ML 85 83 3 88 6 1 1 48 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 48 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 45 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 49 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 49 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 46 u a - - MP 90 89 6 94 6 2 2 47 70 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.223 -2.970 -3.262 1.434 -2.671 -4.064 1.628 -3.174 -3.253 0.985 -3.744 -0.850 2.523 -3.476 -0.376 -2.185 ML 91 89 6 94 6 1 1 46 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 46 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 43 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 47 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 47 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 45 U A - - MP 96 95 6 100 6 2 2 45 68 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 97 95 6 100 6 1 1 44 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 44 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 41 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 45 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 45 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 44 C G - - MP 102 101 6 106 6 2 2 43 66 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.779 -4.704 -4.429 -0.917 -3.099 -4.811 3.616 -3.932 -4.487 -0.707 -4.722 -2.655 0.391 -4.832 -0.811 -3.319 ML 103 101 6 106 6 1 1 42 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 42 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 43 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 43 U A - - MP 108 107 6 112 6 2 2 41 64 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 109 107 6 112 6 1 1 40 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 40 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 37 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 41 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 41 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 42 U A - - MP 114 113 6 118 6 2 2 39 62 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.248 -0.546 -3.139 -4.789 1.194 -3.851 -4.251 -0.327 -4.612 -2.159 3.434 -4.579 -0.809 -3.049 ML 115 113 6 118 6 1 1 38 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 38 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 36 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 39 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 39 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 41 G C - - MP 120 119 6 124 6 2 2 37 60 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.948 -3.193 -5.070 0.061 -5.523 -4.773 -0.836 -5.325 -4.460 3.684 -4.783 -0.901 -1.216 -4.603 -2.885 -3.943 ML 121 119 6 124 6 1 1 36 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 36 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 34 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 37 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 37 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 40 C G - - MP 126 125 6 130 4 2 2 35 58 -7.059 -7.266 -0.049 -5.680 -4.779 -4.704 -4.429 -0.917 -3.099 -4.811 3.616 -3.932 -4.487 -0.707 -4.722 -2.655 0.391 -4.832 -0.811 -3.319 ML 127 125 6 130 4 1 1 35 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 35 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 34 56 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 37 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 36 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - G - - - ML 132 131 6 134 3 1 1 33 55 -8.068 -0.019 -6.722 -0.187 -1.904 1.295 -1.318 D 133 131 6 134 3 0 0 32 54 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 35 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - g - - - ML 135 134 3 137 3 1 1 32 54 -8.068 -0.019 -6.722 0.570 -1.527 0.720 -0.939 D 136 134 3 137 3 0 0 31 53 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 34 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 138 137 3 140 3 1 1 31 53 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 139 137 3 140 3 0 0 30 52 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 33 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 141 140 3 143 3 1 1 30 52 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.145 D 142 140 3 143 3 0 0 29 51 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 32 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - U - - - ML 144 143 3 146 3 1 1 29 51 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 145 143 3 146 3 0 0 27 50 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 31 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - U - - - ML 147 146 3 149 3 1 1 28 50 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 148 146 3 149 3 0 0 26 49 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 30 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - u - - - ML 150 149 3 152 3 1 1 27 49 -8.068 -0.019 -6.722 -0.105 -0.268 -1.203 0.852 D 151 149 3 152 3 0 0 25 48 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 29 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 153 152 3 155 3 1 1 26 48 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.145 D 154 152 3 155 3 0 0 24 47 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 156 155 3 158 3 1 1 25 47 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.145 D 157 155 3 158 3 0 0 23 45 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - G - - - ML 159 158 3 161 3 1 1 24 46 -8.068 -0.019 -6.722 -0.544 -0.588 1.033 -0.730 D 160 158 3 161 3 0 0 22 44 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - U - - - ML 162 161 3 164 3 1 1 23 45 -8.068 -0.019 -6.722 -0.065 -0.943 -1.327 1.088 D 163 161 3 164 3 0 0 21 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - A - - - ML 165 164 3 167 3 1 1 22 44 -2.273 -0.617 -2.826 1.209 -1.559 -0.225 -1.018 D 166 164 3 167 3 0 0 18 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 45 -1.203 -0.896 -5.152 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - A - - - ML 168 167 3 170 3 1 1 15 33 -7.864 -0.022 -6.518 1.672 -2.171 -1.823 -1.694 D 169 167 3 170 3 0 0 14 33 -7.380 -0.512 -1.772 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - u - - - ML 171 170 3 173 3 1 1 13 31 -8.068 -0.019 -6.722 -0.806 0.222 -1.579 0.946 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.761 -2.582 -2.193 -2.145 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4003 ACC RF03442 DESC mir-4003 microRNA precursor family LENG 58 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 11:58:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03442/CM NSEQ 5 EFFN 3.022461 CKSUM 3211632346 STATS LOCAL MSV -7.8417 0.71928 STATS LOCAL VITERBI -8.5206 0.71928 STATS LOCAL FORWARD -3.5556 0.71928 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17274 1.66236 1.57908 1.22204 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 0.00000 * 1 2.89805 2.81394 3.42548 0.15974 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 2 3.00506 3.92105 0.10509 3.49327 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 3 0.11194 3.54239 3.23781 3.27786 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 4 2.78374 3.54394 0.12947 3.48232 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 5 2.76156 1.64922 2.54058 0.40678 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 6 3.33315 2.17935 3.11986 0.21438 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 7 2.78279 3.54268 0.12964 3.48059 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 8 2.78207 3.54172 0.12977 3.47928 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 9 3.32918 2.17901 3.11790 0.21471 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 10 3.32807 2.17892 3.11736 0.21480 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 11 0.23674 3.15349 2.10738 3.06740 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 12 2.89805 2.81394 3.42548 0.15974 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 13 0.55402 2.30094 2.35910 1.46667 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 14 3.21229 0.14055 3.78374 2.68645 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 15 0.23629 3.15611 2.10798 3.07095 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 16 1.62355 1.65029 1.93358 0.76319 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 17 3.33297 2.17934 3.11977 0.21440 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 18 3.51260 0.17505 3.32327 2.35670 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 19 3.33036 2.17911 3.11849 0.21461 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 20 3.32911 2.17901 3.11787 0.21472 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 21 2.78079 3.54002 0.13000 3.47696 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 22 3.50695 0.17550 3.32035 2.35565 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 23 1.58295 2.92993 0.41190 2.54033 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 24 0.96652 2.62794 0.82118 2.23066 24 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 25 2.89805 2.81394 3.42548 0.15974 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 26 0.11194 3.54239 3.23781 3.27786 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 27 2.89805 2.81394 3.42548 0.15974 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 28 2.89805 2.81394 3.42548 0.15974 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 29 1.48953 1.57614 2.31707 0.75675 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 30 0.11194 3.54239 3.23781 3.27786 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 31 0.11194 3.54239 3.23781 3.27786 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 32 1.93159 1.81880 0.56415 2.08731 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 33 1.46733 2.17007 2.44911 0.56402 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 34 0.48799 2.65809 1.53343 2.29998 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.52746 1.40679 1.80199 0.74444 0.64436 1.09861 0.40547 35 0.15920 3.21431 2.94084 2.91560 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04283 3.86509 3.86509 1.46634 0.26236 0.19617 1.72524 36 2.10928 1.19135 2.65891 0.68352 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 37 0.11194 3.54239 3.23781 3.27786 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 38 2.63461 3.48653 0.15118 3.27151 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 39 3.66158 0.15531 3.38136 2.47508 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 40 0.24346 3.30762 2.01543 3.07434 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 41 0.24331 3.30869 2.01559 3.07554 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 42 2.63788 3.49144 0.15048 3.27715 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 43 0.24286 3.31190 2.01608 3.07917 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 44 0.84970 2.12860 1.48445 1.48357 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 45 3.30855 2.43996 2.97089 0.19236 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 46 1.91778 2.18087 1.71372 0.57994 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 47 1.91778 2.18087 1.71372 0.57994 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 48 3.28700 2.43663 2.96182 0.19425 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 49 0.24357 3.30681 2.01530 3.07343 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 50 0.24345 3.30766 2.01543 3.07438 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 51 3.66691 0.15495 3.38386 2.47607 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 52 3.67073 0.15470 3.38565 2.47679 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 53 0.24285 3.31197 2.01609 3.07924 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 54 0.61031 2.70896 1.16906 2.53135 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 55 3.69283 0.15325 3.39595 2.48087 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 56 0.11194 3.54239 3.23781 3.27786 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 57 3.21229 0.14055 3.78374 2.68645 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02420 4.02420 1.46634 0.26236 1.09861 0.40547 58 0.55402 2.30094 2.35910 1.46667 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.01837 4.00616 * 1.46634 0.26236 0.00000 * //