INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1956 ACC RF03438 DESC mir-1956 microRNA precursor family STATES 199 NODES 42 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 07:08:06 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0001470__mir-1956_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.230469 CKSUM 4169224930 NULL 0.000 0.000 0.000 0.000 GA 95.00 TC 95.60 NC 81.30 EFP7GF -5.2420 0.72275 ECMLC 0.59740 -5.86710 3.56636 1600000 336256 0.003569 ECMGC 0.40960 -16.08991 -1.47027 1600000 159479 0.002508 ECMLI 0.58360 -4.55815 4.72856 1600000 270979 0.004428 ECMGI 0.39683 -12.26840 1.52710 1600000 95404 0.004193 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.574 -7.819 -0.100 -4.273 IL 1 1 2 1 4 1 10 82 102 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 65 - C - - MR 3 2 3 5 5 1 12 81 101 -6.840 -0.047 -6.656 -6.868 -7.760 -1.061 1.374 -1.851 -0.617 D 4 2 3 5 5 0 5 80 99 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 10 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 64 C G - - MP 6 5 3 10 6 2 11 80 100 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 7 5 3 10 6 1 7 79 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 6 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 2 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 8 80 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 8 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 63 u g - - MP 12 11 6 16 6 2 9 78 98 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.530 -3.422 -3.357 0.185 -2.308 -3.878 1.960 -3.019 -3.393 0.484 -3.745 -1.439 1.200 -3.664 2.532 -2.294 ML 13 11 6 16 6 1 6 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 4 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 2 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 7 78 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 7 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 62 u a - - MP 18 17 6 22 4 2 8 76 96 -6.629 -6.836 -0.067 -5.250 -3.642 -3.437 -3.536 0.222 -2.606 -4.147 1.706 -3.259 -3.548 0.583 -3.946 -1.350 2.977 -3.809 -0.296 -2.419 ML 19 17 6 22 4 1 5 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 3 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 2 75 95 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 7 78 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 6 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 4 - C - - - ML 24 23 6 26 3 1 6 74 93 -7.670 -0.025 -6.325 -1.061 1.374 -1.851 -0.617 D 25 23 6 26 3 0 1 72 92 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 5 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - A - - - ML 27 26 3 29 3 1 5 72 92 -8.082 -0.023 -6.400 1.557 -1.792 -1.481 -1.282 D 28 26 3 29 3 0 1 71 91 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 4 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 61 - U - - MR 30 29 3 32 3 1 5 71 91 -8.082 -0.023 -6.400 -0.966 -1.059 -1.666 1.429 D 31 29 3 32 3 0 0 70 89 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 3 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 60 - G - - MR 33 32 3 35 5 1 5 70 90 -6.840 -0.047 -6.656 -6.868 -7.760 -0.958 -2.068 1.527 -1.453 D 34 32 3 35 5 0 0 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 59 G C - - MP 36 35 3 40 6 2 6 69 89 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 37 35 3 40 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 2 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 58 u a - - MP 42 41 6 46 6 2 6 67 87 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.642 -3.437 -3.536 0.222 -2.606 -4.147 1.706 -3.259 -3.548 0.583 -3.946 -1.350 2.977 -3.809 -0.296 -2.419 ML 43 41 6 46 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 57 C G - - MP 48 47 6 52 6 2 5 65 85 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 49 47 6 52 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 56 C G - - MP 54 53 6 58 6 2 5 63 83 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 55 53 6 58 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 55 a u - - MP 60 59 6 64 6 2 5 61 81 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.359 -2.510 -3.403 2.947 -3.529 -4.564 0.747 -3.467 -3.318 1.553 -3.843 -0.067 0.325 -3.822 -1.198 -2.267 ML 61 59 6 64 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 54 G C - - MP 66 65 6 70 6 2 4 59 79 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 67 65 6 70 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 53 G C - - MP 72 71 6 76 4 2 2 57 77 -6.574 -7.819 -0.100 -4.273 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 73 71 6 76 4 1 1 57 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 56 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 55 74 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 57 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - A - - MR 78 77 6 80 5 1 1 55 75 -6.840 -0.047 -6.656 -6.868 -7.760 1.557 -1.792 -1.481 -1.282 D 79 77 6 80 5 0 0 54 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 51 G C - - MP 81 80 3 85 6 2 2 54 74 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 82 80 3 85 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 50 C G - - MP 87 86 6 91 6 2 2 52 72 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 88 86 6 91 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 49 u g - - MP 93 92 6 97 4 2 2 50 70 -6.629 -6.836 -0.067 -5.250 -3.530 -3.422 -3.357 0.185 -2.308 -3.878 1.960 -3.019 -3.393 0.484 -3.745 -1.439 1.200 -3.664 2.532 -2.294 ML 94 92 6 97 4 1 1 51 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 99 98 6 101 5 1 1 48 67 -6.840 -0.047 -6.656 -6.868 -7.760 -0.958 -2.068 1.527 -1.453 D 100 98 6 101 5 0 0 47 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 101 101 3 101 5 1 1 48 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 48 a u - - MP 102 101 3 106 6 2 2 47 66 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.359 -2.510 -3.403 2.947 -3.529 -4.564 0.747 -3.467 -3.318 1.553 -3.843 -0.067 0.325 -3.822 -1.198 -2.267 ML 103 101 3 106 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 47 G C - - MP 108 107 6 112 6 2 2 45 64 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 109 107 6 112 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 46 u g - - MP 114 113 6 118 6 2 2 43 62 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.530 -3.422 -3.357 0.185 -2.308 -3.878 1.960 -3.019 -3.393 0.484 -3.745 -1.439 1.200 -3.664 2.532 -2.294 ML 115 113 6 118 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 45 C G - - MP 120 119 6 124 6 2 2 41 60 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 121 119 6 124 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 44 a u - - MP 126 125 6 130 6 2 2 39 58 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.359 -2.510 -3.403 2.947 -3.529 -4.564 0.747 -3.467 -3.318 1.553 -3.843 -0.067 0.325 -3.822 -1.198 -2.267 ML 127 125 6 130 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 43 G C - - MP 132 131 6 136 4 2 2 37 56 -6.629 -6.836 -0.067 -5.250 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 133 131 6 136 4 1 1 37 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - C - - - ML 138 137 6 140 3 1 1 34 53 -8.082 -0.023 -6.400 -1.061 1.374 -1.851 -0.617 D 139 137 6 140 3 0 0 33 52 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 42 - C - - MR 141 140 3 143 5 1 1 33 52 -6.840 -0.047 -6.656 -6.868 -7.760 -1.061 1.374 -1.851 -0.617 D 142 140 3 143 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 41 G C - - MP 144 143 3 148 6 2 2 32 51 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 145 143 3 148 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 40 g u - - MP 150 149 6 154 6 2 2 30 49 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.268 -2.195 -3.401 1.320 -3.829 -4.580 0.491 -3.478 -3.172 1.823 -3.678 2.585 0.129 -3.845 -1.446 -2.186 ML 151 149 6 154 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 39 a u - - MP 156 155 6 160 6 2 2 28 47 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.359 -2.510 -3.403 2.947 -3.529 -4.564 0.747 -3.467 -3.318 1.553 -3.843 -0.067 0.325 -3.822 -1.198 -2.267 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 38 G C - - MP 162 161 6 166 6 2 2 26 45 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -4.175 -2.828 -4.239 0.563 -4.434 -4.458 0.067 -4.428 -3.933 3.466 -4.314 -0.514 -0.337 -4.090 -1.944 -3.125 ML 163 161 6 166 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 37 C G - - MP 168 167 6 172 6 2 2 24 43 -8.994 -8.933 -0.023 -7.710 -7.989 -8.384 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 169 167 6 172 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 36 C G - - MP 174 173 6 178 4 2 2 22 41 -6.629 -6.836 -0.067 -5.250 -3.983 -3.828 -3.762 -0.122 -2.620 -4.246 3.326 -3.371 -3.798 0.223 -4.114 -1.770 0.943 -4.085 -0.319 -2.660 ML 175 173 6 178 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - C - - - ML 180 179 6 182 3 1 1 19 38 -7.670 -0.025 -6.325 -1.061 1.374 -1.851 -0.617 D 181 179 6 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - C - - - ML 183 182 3 185 3 1 1 18 36 -7.670 -0.025 -6.325 -1.061 1.374 -1.851 -0.617 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - G - - - ML 186 185 3 188 3 1 1 16 35 -7.670 -0.025 -6.325 -0.958 -2.068 1.527 -1.453 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - A - - - ML 189 188 3 191 3 1 1 15 33 -7.670 -0.025 -6.325 1.557 -1.792 -1.481 -1.282 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 192 191 3 194 3 1 1 13 32 -7.670 -0.025 -6.325 -0.958 -2.068 1.527 -1.453 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - U - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.966 -1.059 -1.666 1.429 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1956 ACC RF03438 DESC mir-1956 microRNA precursor family LENG 65 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 07:08:06 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.714844 CKSUM 4169224930 STATS LOCAL MSV -7.9059 0.72275 STATS LOCAL VITERBI -9.2721 0.72275 STATS LOCAL FORWARD -3.0492 0.72275 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74878 1.20859 1.13296 1.58321 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.85730 0.33750 2.59799 1.86690 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.63609 1.42838 2.38752 0.51617 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.62979 1.66078 2.33950 0.44388 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.45308 0.30161 3.01894 2.07550 4 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.22189 2.91308 2.66974 2.58474 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.37611 2.89522 0.23142 2.84050 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.63202 1.66079 2.34032 0.44351 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.87422 0.33485 2.60508 1.86954 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.87433 0.33483 2.60512 1.86955 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.50259 2.40020 1.56730 2.34618 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.37844 2.89753 0.23074 2.84386 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.37815 2.89725 0.23083 2.84344 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.36417 2.88332 0.23494 2.82331 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.85971 0.33712 2.59901 1.86727 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.63601 1.42838 2.38749 0.51618 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35732 3.18288 0.22266 2.75711 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.50280 2.39970 1.56728 2.34538 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.37831 2.89741 0.23078 2.84367 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.64160 1.42806 2.38970 0.51530 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.87320 0.33501 2.60465 1.86938 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.50271 2.39993 1.56729 2.34574 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.37788 2.89698 0.23090 2.84305 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.45308 0.30161 3.01894 2.07550 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.37600 2.89511 0.23145 2.84035 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.78452 2.56373 0.40133 2.45717 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.50258 2.40024 1.56731 2.34626 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.37889 2.89798 0.23061 2.84451 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.87392 0.33489 2.60495 1.86949 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.87340 0.33498 2.60473 1.86941 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.45308 0.30161 3.01894 2.07550 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.45308 0.30161 3.01894 2.07550 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.35732 3.18288 0.22266 2.75711 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.22189 2.91308 2.66974 2.58474 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.35732 3.18288 0.22266 2.75711 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.30963 2.32606 2.81233 0.29712 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.14341 2.77124 0.29019 2.63052 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.14380 2.77169 0.29003 2.63112 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.06275 0.26979 2.72888 2.08416 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.57943 1.82520 2.21628 0.42467 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.68032 1.63818 2.37120 0.44044 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.07001 0.26887 2.73178 2.08557 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.45309 0.30161 3.01894 2.07550 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.05665 0.27057 2.72644 2.08298 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57483 1.82494 2.21485 0.42551 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.14205 2.76963 0.29074 2.62841 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 1.92443 2.55973 0.37823 2.38987 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.04713 0.27179 2.72262 2.08111 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.56362 1.82428 2.21135 0.42757 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.92552 2.56106 0.37762 2.39160 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.14309 2.77086 0.29032 2.63002 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.05973 0.27018 2.72768 2.08358 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.22189 2.91308 2.66974 2.58474 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.05884 0.27029 2.72732 2.08340 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.05990 0.27016 2.72775 2.08361 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.57751 1.82509 2.21568 0.42502 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.14429 2.77226 0.28984 2.63187 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.14487 2.77295 0.28961 2.63276 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.50419 2.51979 1.49743 2.38791 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.07010 0.26886 2.73181 2.08558 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.35732 3.18288 0.22266 2.75711 60 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.30963 2.32606 2.81233 0.29712 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.50465 2.51840 1.49745 2.38600 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 1.92652 2.56228 0.37705 2.39318 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.14486 2.77294 0.28961 2.63276 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.45308 0.30161 3.01894 2.07550 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //