INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4657 ACC RF03431 DESC mir-4657 microRNA precursor family STATES 163 NODES 34 CLEN 53 W 68 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 09:04:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03431/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.753906 CKSUM 1324036746 NULL 0.000 0.000 0.000 0.000 GA 73.00 TC 73.20 NC 72.80 EFP7GF -5.3773 0.72924 ECMLC 0.69159 -4.21993 4.35461 1600000 451414 0.002658 ECMGC 0.45062 -16.71452 -1.85602 1600000 323526 0.001236 ECMLI 0.66990 -3.22901 5.26287 1600000 354622 0.003384 ECMGI 0.51267 -11.22363 0.76995 1600000 187258 0.002136 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 68 88 -6.874 -7.081 -0.056 -5.495 IL 1 1 2 1 4 1 6 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 5 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 5 1 7 68 88 -7.034 -0.041 -6.849 -7.062 -7.953 1.688 -2.234 -1.880 -1.763 D 4 2 3 5 5 0 0 67 87 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 4 69 88 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 53 A U - - MP 6 5 3 10 6 2 8 67 87 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -3.681 -2.741 -3.707 3.255 -3.991 -5.044 0.301 -3.757 -3.604 1.198 -4.146 -0.236 -0.117 -4.250 -1.640 -2.548 ML 7 5 3 10 6 1 2 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 3 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 52 U A - - MP 12 11 6 16 6 2 8 65 85 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 13 11 6 16 6 1 2 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 51 g u - - MP 18 17 6 22 6 2 7 63 83 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -3.531 -2.333 -3.690 1.185 -4.337 -5.062 0.041 -3.726 -3.376 1.473 -3.893 2.988 -0.319 -4.288 -1.900 -2.409 ML 19 17 6 22 6 1 2 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 50 U A - - MP 24 23 6 28 6 2 6 61 81 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 25 23 6 28 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 49 G C - - MP 30 29 6 34 6 2 5 59 79 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 31 29 6 34 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 48 G C - - MP 36 35 6 40 4 2 3 57 77 -6.874 -7.081 -0.056 -5.495 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 37 35 6 40 4 1 1 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 2 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 42 41 6 44 3 1 2 55 74 -8.291 -0.020 -6.609 1.688 -2.234 -1.880 -1.763 D 43 41 6 44 3 0 0 54 73 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 47 - A - - MR 45 44 3 47 5 1 1 54 73 -7.034 -0.041 -6.849 -7.062 -7.953 1.688 -2.234 -1.880 -1.763 D 46 44 3 47 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 46 A U - - MP 48 47 3 52 6 2 2 53 72 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -3.681 -2.741 -3.707 3.255 -3.991 -5.044 0.301 -3.757 -3.604 1.198 -4.146 -0.236 -0.117 -4.250 -1.640 -2.548 ML 49 47 3 52 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 45 G C - - MP 54 53 6 58 6 2 2 51 70 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 55 53 6 58 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 44 U A - - MP 60 59 6 64 6 2 2 49 68 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 61 59 6 64 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 43 G C - - MP 66 65 6 70 4 2 2 47 66 -6.874 -7.081 -0.056 -5.495 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 67 65 6 70 4 1 1 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - G - - - ML 72 71 6 74 3 1 1 44 63 -8.291 -0.020 -6.609 -1.434 -2.631 1.688 -2.017 D 73 71 6 74 3 0 0 43 62 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 42 - A - - MR 75 74 3 77 5 1 1 43 62 -7.034 -0.041 -6.849 -7.062 -7.953 1.688 -2.234 -1.880 -1.763 D 76 74 3 77 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 41 U A - - MP 78 77 3 82 6 2 2 42 61 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 79 77 3 82 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 40 C G - - MP 84 83 6 88 6 2 2 40 59 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.414 -4.308 -4.127 -0.552 -2.875 -4.556 3.507 -3.671 -4.172 -0.292 -4.447 -2.253 0.653 -4.492 -0.578 -3.016 ML 85 83 6 88 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 39 U A - - MP 90 89 6 94 4 2 2 38 57 -6.874 -7.081 -0.056 -5.495 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 91 89 6 94 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 40 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - G - - - ML 96 95 6 98 3 1 1 36 54 -7.896 -0.022 -6.550 -1.434 -2.631 1.688 -2.017 D 97 95 6 98 3 0 0 35 54 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - - - ML 99 98 3 101 3 1 1 35 53 -8.291 -0.020 -6.609 1.688 -2.234 -1.880 -1.763 D 100 98 3 101 3 0 0 33 52 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 38 - A - - MR 102 101 3 104 5 1 1 34 52 -7.034 -0.041 -6.849 -7.062 -7.953 1.688 -2.234 -1.880 -1.763 D 103 101 3 104 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 37 G C - - MP 105 104 3 109 6 2 2 33 51 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 106 104 3 109 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 36 G C - - MP 111 110 6 115 6 2 2 31 49 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.612 -3.032 -4.700 0.286 -5.050 -4.642 -0.446 -4.933 -4.242 3.605 -4.588 -0.727 -0.835 -4.382 -2.477 -3.579 ML 112 110 6 115 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 35 C G - - MP 117 116 6 121 6 2 2 29 47 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.414 -4.308 -4.127 -0.552 -2.875 -4.556 3.507 -3.671 -4.172 -0.292 -4.447 -2.253 0.653 -4.492 -0.578 -3.016 ML 118 116 6 121 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 34 A U - - MP 123 122 6 127 6 2 2 27 45 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -3.681 -2.741 -3.707 3.255 -3.991 -5.044 0.301 -3.757 -3.604 1.198 -4.146 -0.236 -0.117 -4.250 -1.640 -2.548 ML 124 122 6 127 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 33 U A - - MP 129 128 6 133 6 2 2 25 43 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 130 128 6 133 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 32 A U - - MP 135 134 6 139 6 2 2 23 41 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -3.681 -2.741 -3.707 3.255 -3.991 -5.044 0.301 -3.757 -3.604 1.198 -4.146 -0.236 -0.117 -4.250 -1.640 -2.548 ML 136 134 6 139 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 31 U A - - MP 141 140 6 145 6 2 2 21 39 -9.080 -9.019 -0.022 -7.796 -8.075 -8.470 -4.050 -3.870 -3.903 -0.176 -2.876 -4.480 1.449 -3.562 -3.910 0.100 -4.290 -1.774 3.257 -4.206 -0.556 -2.748 ML 142 140 6 145 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 30 A U - - MP 147 146 6 151 4 2 2 18 37 -6.874 -7.081 -0.056 -5.495 -3.681 -2.741 -3.707 3.255 -3.991 -5.044 0.301 -3.757 -3.604 1.198 -4.146 -0.236 -0.117 -4.250 -1.640 -2.548 ML 148 146 6 151 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - G - - - ML 153 152 6 155 3 1 1 15 33 -7.896 -0.022 -6.550 -1.434 -2.631 1.688 -2.017 D 154 152 6 155 3 0 0 15 33 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - A - - - ML 156 155 3 158 3 1 1 13 32 -7.896 -0.022 -6.550 1.688 -2.234 -1.880 -1.763 D 157 155 3 158 3 0 0 13 32 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - G - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 -1.434 -2.631 1.688 -2.017 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4657 ACC RF03431 DESC mir-4657 microRNA precursor family LENG 53 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 09:04:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03431/CM NSEQ 2 EFFN 1.816406 CKSUM 1324036746 STATS LOCAL MSV -7.9029 0.72924 STATS LOCAL VITERBI -8.8263 0.72924 STATS LOCAL FORWARD -3.0960 0.72924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22949 1.61147 1.27455 1.47662 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.20841 2.96923 2.72023 2.64618 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.47078 2.46115 1.60985 2.40538 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.68901 1.69830 2.40298 0.41762 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.80638 2.62211 0.38266 2.51255 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.68763 1.69828 2.40245 0.41784 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.41416 2.95835 0.21839 2.90336 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.41372 2.95789 0.21851 2.90271 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.20841 2.96923 2.72023 2.64618 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.47157 2.45911 1.60969 2.40217 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.41346 2.95763 0.21858 2.90233 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.68678 1.69827 2.40213 0.41798 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.41406 2.95825 0.21841 2.90322 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.41726 3.25272 0.20703 2.82730 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.68344 1.69823 2.40086 0.41851 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.92728 0.31658 2.66673 1.90824 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.68689 1.69827 2.40217 0.41796 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.41726 3.25272 0.20703 2.82730 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.20841 2.96923 2.72023 2.64618 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.41216 2.95629 0.21895 2.90040 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.41383 2.95801 0.21848 2.90288 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.92865 0.31638 2.66732 1.90846 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.47107 2.46040 1.60979 2.40419 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.68661 1.69827 2.40206 0.41801 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.47119 2.46010 1.60977 2.40373 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.68565 1.69826 2.40170 0.41816 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.47130 2.45981 1.60975 2.40326 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41726 3.25272 0.20703 2.82730 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20841 2.96923 2.72023 2.64618 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.41726 3.25272 0.20703 2.82730 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.63281 1.87341 2.27452 0.39798 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.47562 2.58041 1.53501 2.43835 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.63401 1.87350 2.27491 0.39777 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.47542 2.58106 1.53501 2.43922 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.63582 1.87362 2.27550 0.39745 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.18450 2.83557 0.27350 2.68721 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.12500 0.25534 2.79201 2.11931 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.12853 0.25492 2.79345 2.11999 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.20841 2.96923 2.72023 2.64618 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.47513 2.58198 1.53502 2.44046 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.18523 2.83646 0.27322 2.68836 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47466 2.58347 1.53504 2.44248 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.20841 2.96923 2.72023 2.64618 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.11967 0.25598 2.78985 2.11828 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.47514 2.58195 1.53502 2.44042 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.12455 0.25540 2.79183 2.11922 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.64026 1.87394 2.27693 0.39669 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.20841 2.96923 2.72023 2.64618 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.11604 0.25641 2.78837 2.11757 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.11690 0.25631 2.78872 2.11774 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.47546 2.58092 1.53501 2.43904 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.72910 1.68366 2.42594 0.41456 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.47551 2.58076 1.53501 2.43883 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.63241 1.87338 2.27439 0.39804 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //