INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4451 ACC RF03429 DESC mir-4451 microRNA precursor family STATES 202 NODES 45 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 14:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03429/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.394531 CKSUM 3367524176 NULL 0.000 0.000 0.000 0.000 GA 100.00 TC 101.30 NC 89.60 EFP7GF -5.7020 0.72325 ECMLC 0.62941 -5.58216 3.39911 1600000 342129 0.003507 ECMGC 0.47736 -14.78518 -2.25880 1600000 158117 0.002530 ECMLI 0.62038 -4.10242 4.48997 1600000 247866 0.004841 ECMGI 0.52506 -9.62369 0.88280 1600000 99506 0.004020 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.710 -6.917 -0.063 -5.331 IL 1 1 2 1 4 1 12 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 11 82 102 -8.151 -0.022 -6.469 -1.093 -1.161 -1.803 1.484 D 4 2 3 5 3 0 6 81 101 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 10 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 66 - C - - MR 6 5 3 8 5 1 11 81 101 -6.904 -0.045 -6.719 -6.932 -7.823 -1.225 1.449 -2.026 -0.746 D 7 5 3 8 5 0 4 80 100 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 8 82 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 65 C G - - MP 9 8 3 13 6 2 11 80 100 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 10 8 3 13 6 1 6 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 5 79 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 1 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 80 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 64 U A - - MP 15 14 6 19 6 2 10 78 98 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.764 -3.569 -3.646 0.102 -2.686 -4.248 1.631 -3.349 -3.657 0.432 -4.050 -1.480 3.075 -3.928 -0.373 -2.519 ML 16 14 6 19 6 1 5 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 63 G C - - MP 21 20 6 25 6 2 9 76 96 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.318 -2.894 -4.388 0.474 -4.635 -4.521 -0.102 -4.593 -4.037 3.517 -4.407 -0.582 -0.501 -4.186 -2.118 -3.271 ML 22 20 6 25 6 1 4 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 62 U A - - MP 27 26 6 31 4 2 7 74 94 -6.710 -6.917 -0.063 -5.331 -3.764 -3.569 -3.646 0.102 -2.686 -4.248 1.631 -3.349 -3.657 0.432 -4.050 -1.480 3.075 -3.928 -0.373 -2.519 ML 28 26 6 31 4 1 4 74 94 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 2 74 94 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 1 73 93 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 5 76 96 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 5 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 6 35 5 1 6 72 91 -6.904 -0.045 -6.719 -6.932 -7.823 1.605 -1.935 -1.611 -1.438 D 34 32 6 35 5 0 0 70 90 -4.959 -0.803 -4.221 -2.596 -2.508 IL 35 35 3 35 5 1 3 72 92 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 61 C G - - MP 36 35 3 40 6 2 7 71 90 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 37 35 3 40 6 1 2 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 2 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 3 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 60 C G - - MP 42 41 6 46 6 2 7 69 88 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 43 41 6 46 6 1 2 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 2 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 3 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 3 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 59 U A - - MP 48 47 6 52 6 2 7 67 86 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.764 -3.569 -3.646 0.102 -2.686 -4.248 1.631 -3.349 -3.657 0.432 -4.050 -1.480 3.075 -3.928 -0.373 -2.519 ML 49 47 6 52 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 2 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 58 C G - - MP 54 53 6 58 6 2 6 65 84 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 55 53 6 58 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 2 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 57 A U - - MP 60 59 6 64 6 2 6 63 82 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.455 -2.578 -3.494 3.056 -3.668 -4.707 0.612 -3.555 -3.404 1.445 -3.934 -0.115 0.192 -3.949 -1.332 -2.351 ML 61 59 6 64 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 2 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 56 G C - - MP 66 65 6 70 6 2 6 61 80 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.318 -2.894 -4.388 0.474 -4.635 -4.521 -0.102 -4.593 -4.037 3.517 -4.407 -0.582 -0.501 -4.186 -2.118 -3.271 ML 67 65 6 70 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 55 C G - - MP 72 71 6 76 6 2 5 59 78 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 73 71 6 76 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 54 U A - - MP 78 77 6 82 6 2 5 57 76 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.764 -3.569 -3.646 0.102 -2.686 -4.248 1.631 -3.349 -3.657 0.432 -4.050 -1.480 3.075 -3.928 -0.373 -2.519 ML 79 77 6 82 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 53 u g - - MP 84 83 6 88 6 2 5 55 74 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.661 -3.561 -3.460 0.060 -2.362 -3.958 1.911 -3.090 -3.497 0.331 -3.835 -1.576 1.128 -3.785 2.670 -2.391 ML 85 83 6 88 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 52 U A - - MP 90 89 6 94 6 2 4 53 72 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.764 -3.569 -3.646 0.102 -2.686 -4.248 1.631 -3.349 -3.657 0.432 -4.050 -1.480 3.075 -3.928 -0.373 -2.519 ML 91 89 6 94 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 51 g u - - MP 96 95 6 100 6 2 4 51 70 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.350 -2.233 -3.491 1.282 -3.988 -4.728 0.351 -3.555 -3.234 1.715 -3.743 2.733 -0.011 -3.982 -1.588 -2.255 ML 97 95 6 100 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 50 C G - - MP 102 101 6 106 6 2 3 49 68 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 103 101 6 106 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 49 u g - - MP 108 107 6 112 4 2 2 47 66 -6.710 -6.917 -0.063 -5.331 -3.661 -3.561 -3.460 0.060 -2.362 -3.958 1.911 -3.090 -3.497 0.331 -3.835 -1.576 1.128 -3.785 2.670 -2.391 ML 109 107 6 112 4 1 1 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 45 65 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 48 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - C - - - ML 114 113 6 116 3 1 1 44 64 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 115 113 6 116 3 0 0 43 63 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - C - - - ML 117 116 3 119 3 1 1 43 63 -8.151 -0.022 -6.469 -1.225 1.449 -2.026 -0.746 D 118 116 3 119 3 0 0 42 61 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 48 - U - - MR 120 119 3 122 3 1 1 42 62 -8.151 -0.022 -6.469 -1.093 -1.161 -1.803 1.484 D 121 119 3 122 3 0 0 41 60 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 47 - C - - MR 123 122 3 125 5 1 1 41 61 -6.904 -0.045 -6.719 -6.932 -7.823 -1.225 1.449 -2.026 -0.746 D 124 122 3 125 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 46 C G - - MP 126 125 3 130 6 2 2 40 60 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 127 125 3 130 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 45 A U - - MP 132 131 6 136 6 2 2 38 58 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.455 -2.578 -3.494 3.056 -3.668 -4.707 0.612 -3.555 -3.404 1.445 -3.934 -0.115 0.192 -3.949 -1.332 -2.351 ML 133 131 6 136 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 44 A U - - MP 138 137 6 142 4 2 2 36 56 -6.710 -6.917 -0.063 -5.331 -3.455 -2.578 -3.494 3.056 -3.668 -4.707 0.612 -3.555 -3.404 1.445 -3.934 -0.115 0.192 -3.949 -1.332 -2.351 ML 139 137 6 142 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 36 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 35 55 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 38 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - C - - - ML 144 143 6 146 3 1 1 34 53 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 145 143 6 146 3 0 0 32 52 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - C - - - ML 147 146 3 149 5 1 1 33 52 -6.904 -0.045 -6.719 -6.932 -7.823 -1.225 1.449 -2.026 -0.746 D 148 146 3 149 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 149 149 3 149 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 43 A U - - MP 150 149 3 154 6 2 2 32 51 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.455 -2.578 -3.494 3.056 -3.668 -4.707 0.612 -3.555 -3.404 1.445 -3.934 -0.115 0.192 -3.949 -1.332 -2.351 ML 151 149 3 154 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 42 A U - - MP 156 155 6 160 6 2 2 30 49 -9.021 -8.961 -0.022 -7.737 -8.017 -8.412 -3.455 -2.578 -3.494 3.056 -3.668 -4.707 0.612 -3.555 -3.404 1.445 -3.934 -0.115 0.192 -3.949 -1.332 -2.351 ML 157 155 6 160 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 41 C G - - MP 162 161 6 166 4 2 2 28 47 -6.710 -6.917 -0.063 -5.331 -4.118 -3.981 -3.878 -0.258 -2.699 -4.345 3.391 -3.464 -3.916 0.056 -4.220 -1.924 0.854 -4.214 -0.398 -2.772 ML 163 161 6 166 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - C - - - ML 168 167 6 170 3 1 1 25 44 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 169 167 6 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - A - - - ML 171 170 3 173 3 1 1 24 43 -7.745 -0.024 -6.399 1.605 -1.935 -1.611 -1.438 D 172 170 3 173 3 0 0 23 42 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - C - - - ML 174 173 3 176 3 1 1 23 41 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - U - - - ML 177 176 3 179 3 1 1 21 40 -7.745 -0.024 -6.399 -1.093 -1.161 -1.803 1.484 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - U - - - ML 180 179 3 182 3 1 1 20 39 -7.745 -0.024 -6.399 -1.093 -1.161 -1.803 1.484 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - C - - - ML 183 182 3 185 3 1 1 19 38 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - C - - - ML 186 185 3 188 3 1 1 18 36 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - A - - - ML 189 188 3 191 3 1 1 16 35 -7.745 -0.024 -6.399 1.605 -1.935 -1.611 -1.438 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - C - - - ML 192 191 3 194 3 1 1 15 33 -7.745 -0.024 -6.399 -1.225 1.449 -2.026 -0.746 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - A - - - ML 195 194 3 197 3 1 1 13 32 -7.745 -0.024 -6.399 1.605 -1.935 -1.611 -1.438 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 40 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.093 -1.161 -1.803 1.484 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4451 ACC RF03429 DESC mir-4451 microRNA precursor family LENG 66 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 14:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03429/CM NSEQ 2 EFFN 1.800781 CKSUM 3367524176 STATS LOCAL MSV -7.7799 0.72325 STATS LOCAL VITERBI -9.1217 0.72325 STATS LOCAL FORWARD -3.5042 0.72325 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54877 1.19797 1.48378 1.35129 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35275 2.36145 2.85791 0.28340 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.91944 0.31926 2.65744 1.90232 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.67953 1.69246 2.39307 0.42161 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.40953 2.94996 0.21998 2.89554 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.67929 1.69246 2.39297 0.42165 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.21040 2.96067 2.71254 2.63681 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.91879 0.31936 2.65716 1.90222 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.91966 0.31923 2.65753 1.90236 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.67823 1.69245 2.39257 0.42182 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.91917 0.31930 2.65733 1.90228 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.47592 2.45073 1.60320 2.39465 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.40772 2.94811 0.22049 2.89287 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.91759 0.31953 2.65665 1.90203 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.67641 1.69243 2.39189 0.42211 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.68319 1.44828 2.43873 0.49526 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.67591 1.69242 2.39170 0.42219 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.80197 2.61147 0.38617 2.50169 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.91602 0.31977 2.65598 1.90178 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.68248 1.44832 2.43844 0.49537 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.50986 0.28409 3.07801 2.12054 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.50986 0.28409 3.07801 2.12054 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.91455 0.31999 2.65535 1.90155 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.47593 2.45070 1.60320 2.39460 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.47581 2.45101 1.60322 2.39509 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.50986 0.28409 3.07801 2.12054 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.50986 0.28409 3.07801 2.12054 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.47583 2.45096 1.60322 2.39500 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.47577 2.45112 1.60323 2.39526 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.92001 0.31917 2.65768 1.90241 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.50986 0.28409 3.07801 2.12054 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21040 2.96067 2.71254 2.63681 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.50986 0.28409 3.07801 2.12054 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.35275 2.36145 2.85791 0.28340 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.35275 2.36145 2.85791 0.28340 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.50986 0.28409 3.07801 2.12054 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.50986 0.28409 3.07801 2.12054 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.21040 2.96067 2.71254 2.63681 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.50986 0.28409 3.07801 2.12054 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.21040 2.96067 2.71254 2.63681 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.35275 2.36145 2.85791 0.28340 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.17538 2.82237 0.27706 2.67417 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.62024 1.86568 2.26415 0.40271 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.61543 1.86535 2.26259 0.40356 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.62793 1.86621 2.26662 0.40137 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.62939 1.86631 2.26709 0.40112 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.18002 2.82796 0.27528 2.68140 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.50986 0.28409 3.07801 2.12054 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.35275 2.36145 2.85791 0.28340 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.95196 2.61074 0.36138 2.43260 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.17530 2.82226 0.27710 2.67403 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.71737 1.67666 2.41597 0.41904 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.48025 2.56999 1.52917 2.42908 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.95222 2.61106 0.36124 2.43302 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.48019 2.57018 1.52917 2.42933 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.17582 2.82290 0.27689 2.67485 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.10505 0.25875 2.77816 2.11191 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.62346 1.86590 2.26518 0.40215 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.17566 2.82271 0.27696 2.67460 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.48036 2.56962 1.52917 2.42859 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.17362 2.82024 0.27775 2.67142 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.17071 2.81674 0.27887 2.66690 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.47960 2.57204 1.52918 2.43185 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 3.11451 0.25761 2.78200 2.11374 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.47919 2.57333 1.52919 2.43359 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.18068 2.82876 0.27503 2.68243 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.50986 0.28409 3.07801 2.12054 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //