INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1005 ACC RF03427 DESC mir-1005 microRNA precursor family STATES 187 NODES 40 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 04:16:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03427/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.628906 CKSUM 1050036273 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 90.40 NC 67.80 EFP7GF -5.5371 0.72662 ECMLC 0.65606 -5.21368 3.68851 1600000 412696 0.002908 ECMGC 0.44264 -15.41299 -1.72323 1600000 171276 0.002335 ECMLI 0.64043 -3.81570 4.78131 1600000 295320 0.004063 ECMGI 0.47855 -10.38352 1.21816 1600000 103099 0.003880 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 95 -6.746 -7.992 -0.088 -4.445 IL 1 1 2 1 4 1 6 78 97 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - G - - MR 3 2 3 5 3 1 8 76 96 -8.244 -0.020 -6.561 -1.326 -2.504 1.658 -1.889 D 4 2 3 5 3 0 2 75 94 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 6 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - A - - MR 6 5 3 8 5 1 8 75 95 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 7 5 3 8 5 0 2 74 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 5 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 G C - - MP 9 8 3 13 6 2 9 74 94 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 10 8 3 13 6 1 3 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 u g - - MP 15 14 6 19 6 2 9 72 92 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.852 -3.762 -3.608 -0.121 -2.444 -4.074 1.836 -3.192 -3.646 0.114 -3.964 -1.771 1.023 -3.959 2.837 -2.530 ML 16 14 6 19 6 1 3 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 G C - - MP 21 20 6 25 6 2 8 70 90 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 22 20 6 25 6 1 3 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 4 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 A U - - MP 27 26 6 31 6 2 8 68 87 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 28 26 6 31 6 1 3 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 55 g u - - MP 33 32 6 37 6 2 8 66 85 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.468 -2.296 -3.622 1.220 -4.216 -4.945 0.148 -3.667 -3.326 1.557 -3.840 2.908 -0.213 -4.182 -1.793 -2.356 ML 34 32 6 37 6 1 3 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 54 U A - - MP 39 38 6 43 6 2 7 64 83 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 40 38 6 43 6 1 3 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 53 U A - - MP 45 44 6 49 6 2 6 62 81 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 46 44 6 49 6 1 2 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 52 g u - - MP 51 50 6 55 6 2 5 60 79 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.468 -2.296 -3.622 1.220 -4.216 -4.945 0.148 -3.667 -3.326 1.557 -3.840 2.908 -0.213 -4.182 -1.793 -2.356 ML 52 50 6 55 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 51 A U - - MP 57 56 6 61 4 2 4 58 77 -6.819 -7.026 -0.058 -5.440 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 58 56 6 61 4 1 1 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 60 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 2 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 63 62 6 65 3 1 3 56 75 -7.845 -0.022 -6.499 -1.269 -1.304 -1.991 1.550 D 64 62 6 65 3 0 0 54 74 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - C - - - ML 66 65 3 68 3 1 2 55 74 -8.244 -0.020 -6.561 -1.456 1.537 -2.269 -0.929 D 67 65 3 68 3 0 0 53 72 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - U - - MR 69 68 3 71 5 1 2 53 73 -6.990 -0.042 -6.805 -7.018 -7.909 -1.269 -1.304 -1.991 1.550 D 70 68 3 71 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 49 G C - - MP 72 71 3 76 6 2 3 52 72 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 73 71 3 76 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 48 A U - - MP 78 77 6 82 6 2 3 50 70 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 79 77 6 82 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 47 U A - - MP 84 83 6 88 6 2 2 48 68 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 85 83 6 88 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 46 U A - - MP 90 89 6 94 6 2 2 46 66 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 45 u g - - MP 96 95 6 100 6 2 2 44 64 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.852 -3.762 -3.608 -0.121 -2.444 -4.074 1.836 -3.192 -3.646 0.114 -3.964 -1.771 1.023 -3.959 2.837 -2.530 ML 97 95 6 100 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 44 C G - - MP 102 101 6 106 4 2 2 42 62 -6.819 -7.026 -0.058 -5.440 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 103 101 6 106 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - G - - - ML 108 107 6 110 5 1 1 40 59 -6.990 -0.042 -6.805 -7.018 -7.909 -1.326 -2.504 1.658 -1.889 D 109 107 6 110 5 0 0 38 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 110 110 3 110 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 43 A U - - MP 111 110 3 115 6 2 2 39 58 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 112 110 3 115 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 42 G C - - MP 117 116 6 121 6 2 2 37 56 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 118 116 6 121 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 41 g u - - MP 123 122 6 127 6 2 2 35 54 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -2.713 -2.100 -2.877 1.221 -3.018 -3.791 0.899 -3.069 -2.798 1.564 -3.294 1.670 0.607 -3.103 -0.891 1.266 ML 124 122 6 127 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 40 U A - - MP 129 128 6 133 6 2 2 33 52 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 130 128 6 133 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 39 U A - - MP 135 134 6 139 4 2 2 31 50 -6.746 -7.992 -0.088 -4.445 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 136 134 6 139 4 1 1 30 49 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 30 49 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 28 47 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 1 30 49 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 38 - U - - MR 141 140 6 143 3 1 1 29 48 -8.244 -0.020 -6.561 -1.269 -1.304 -1.991 1.550 D 142 140 6 143 3 0 0 27 46 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 37 - A - - MR 144 143 3 146 3 1 1 28 47 -8.244 -0.020 -6.561 1.662 -2.133 -1.789 -1.653 D 145 143 3 146 3 0 0 26 45 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 36 - U - - MR 147 146 3 149 3 1 1 27 46 -8.244 -0.020 -6.561 -1.269 -1.304 -1.991 1.550 D 148 146 3 149 3 0 0 25 44 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 35 - A - - MR 150 149 3 152 5 1 1 26 45 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 151 149 3 152 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 34 U A - - MP 153 152 3 157 6 2 2 25 44 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 154 152 3 157 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 33 u a - - MP 159 158 6 163 6 2 2 23 42 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.312 -3.282 -3.257 0.316 -2.369 -3.881 1.896 -3.032 -3.283 0.562 -3.705 -1.367 2.252 -3.491 1.692 -2.209 ML 160 158 6 163 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 32 G C - - MP 165 164 6 169 4 2 2 21 40 -6.819 -7.026 -0.058 -5.440 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 166 164 6 169 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - G - - - ML 171 170 6 173 3 1 1 18 36 -7.845 -0.022 -6.499 -1.326 -2.504 1.658 -1.889 D 172 170 6 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - C - - - ML 174 173 3 176 3 1 1 16 35 -7.845 -0.412 -2.033 -1.456 1.537 -2.269 -0.929 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - A - - - ML 177 176 3 179 3 1 1 15 34 -7.462 -0.029 -6.116 1.389 -1.406 -1.131 -0.870 D 178 176 3 179 3 0 0 14 32 -7.752 -0.379 -2.144 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - C - - - ML 180 179 3 182 3 1 1 13 32 -7.845 -0.022 -6.499 -1.456 1.537 -2.269 -0.929 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.662 -2.133 -1.789 -1.653 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1005 ACC RF03427 DESC mir-1005 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 04:16:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03427/CM NSEQ 2 EFFN 1.855469 CKSUM 1050036273 STATS LOCAL MSV -8.4578 0.72662 STATS LOCAL VITERBI -9.1628 0.72662 STATS LOCAL FORWARD -3.3437 0.72662 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41540 1.56413 1.34534 1.24670 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.42053 2.97372 0.21591 2.91504 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.70824 1.46128 2.46905 0.48331 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42581 2.97924 0.21445 2.92293 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.45982 2.48299 1.62617 2.42557 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.81385 2.64256 0.37655 2.53111 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.70595 1.71289 2.42516 0.40889 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.70567 1.71288 2.42506 0.40894 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.81366 2.64223 0.37668 2.53065 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.45993 2.48268 1.62615 2.42509 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.37988 2.38376 2.88652 0.27514 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.54557 0.27367 3.11503 2.14891 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.42517 2.97856 0.21463 2.92197 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.45970 2.48331 1.62620 2.42606 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.70772 1.71292 2.42585 0.40862 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.70766 1.71291 2.42582 0.40863 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.71250 1.46109 2.47081 0.48268 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.94772 0.30988 2.69024 1.92317 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.43987 3.27898 0.20147 2.85370 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.45977 2.48312 1.62619 2.42578 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.42707 2.98055 0.21410 2.92482 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.75242 2.08859 0.89804 1.21936 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.70678 1.71290 2.42548 0.40876 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.70638 1.71289 2.42533 0.40883 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.69837 1.71276 2.42224 0.41008 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.36727 1.39742 2.12419 0.61711 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.42599 2.97942 0.21440 2.92320 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.43987 3.27898 0.20147 2.85370 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.54557 0.27367 3.11503 2.14891 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.33377 3.73767 1.34719 1.46634 0.26236 1.09861 0.40547 29 0.38635 2.43560 2.23858 2.06898 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06437 3.46827 3.46827 1.46634 0.26236 0.16820 1.86553 30 2.54557 0.27367 3.11503 2.14891 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.20354 2.99049 2.73935 2.66947 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 3.14101 0.25099 2.81277 2.13123 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.10548 2.28930 0.79728 2.14511 33 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.46417 2.60681 1.54972 2.46200 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.20354 2.99049 2.73935 2.66947 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.37988 2.38376 2.88652 0.27514 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.20354 2.99049 2.73935 2.66947 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.37988 2.38376 2.88652 0.27514 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.46506 2.60388 1.54966 2.45808 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.46513 2.60365 1.54965 2.45778 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.18410 1.61981 1.89570 0.61753 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.12565 0.25280 2.80644 2.12824 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.64313 1.89124 2.29360 0.38997 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.19800 2.85720 0.26828 2.70524 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 1.97052 2.64422 0.35065 2.46128 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.46455 2.60556 1.54969 2.46033 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.46438 2.60612 1.54970 2.46108 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.66069 1.89257 2.29938 0.38699 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.14993 0.24995 2.81642 2.13294 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.37988 2.38376 2.88652 0.27514 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.65387 1.89206 2.29714 0.38814 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.74621 1.70101 2.44622 0.40540 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.46498 2.60415 1.54966 2.45845 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.46491 2.60438 1.54967 2.45876 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.74800 1.70103 2.44690 0.40514 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.65660 1.89226 2.29804 0.38768 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.14073 0.25102 2.81265 2.13117 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 1.97126 2.64518 0.35026 2.46248 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.14580 0.25043 2.81473 2.13215 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.20354 2.99049 2.73935 2.66947 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.43987 3.27898 0.20147 2.85370 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //