INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-728 ACC RF03400 DESC mir-728 microRNA precursor family STATES 190 NODES 45 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 20:14:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03400/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.199219 CKSUM 2019138585 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 70.00 NC 69.40 EFP7GF -9.7002 0.71928 ECMLC 0.60890 -4.90641 4.27065 1600000 320624 0.003743 ECMGC 0.40464 -13.92711 0.31125 1600000 127121 0.003147 ECMLI 0.58441 -3.72775 5.34174 1600000 240472 0.004990 ECMGI 0.44384 -8.85436 3.28176 1600000 87376 0.004578 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -6.962 -8.208 -0.075 -4.661 IL 1 1 2 1 4 1 9 79 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 63 - c - - MR 3 2 3 5 3 1 12 78 98 -8.448 -0.018 -6.765 -0.928 0.989 -1.747 0.253 D 4 2 3 5 3 0 5 76 96 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 10 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - U - - MR 6 5 3 8 5 1 12 77 97 -7.180 -0.037 -6.996 -7.208 -8.100 0.038 -0.919 -1.274 1.022 D 7 5 3 8 5 0 4 76 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 8 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 61 A U - - MP 9 8 3 13 6 2 13 76 96 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 10 8 3 13 6 1 6 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 3 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 8 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 60 A U - - MP 15 14 6 19 6 2 12 74 94 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 16 14 6 19 6 1 6 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 59 A U - - MP 21 20 6 25 6 2 12 72 92 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 22 20 6 25 6 1 5 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 5 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 58 U G - - MP 27 26 6 31 6 2 11 70 90 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.299 -4.227 -3.953 -0.542 -2.648 -4.344 1.643 -3.440 -3.996 -0.384 -4.266 -2.222 0.766 -4.364 3.127 -2.856 ML 28 26 6 31 6 1 5 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 57 G C - - MP 33 32 6 37 6 2 11 68 88 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.940 -3.189 -5.060 0.067 -5.511 -4.770 -0.826 -5.315 -4.455 3.682 -4.778 -0.896 -1.206 -4.597 -2.874 -3.933 ML 34 32 6 37 6 1 5 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 56 U A - - MP 39 38 6 43 6 2 10 66 86 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.427 -4.257 -4.239 -0.536 -3.131 -4.781 1.201 -3.843 -4.241 -0.315 -4.603 -2.149 3.430 -4.569 -0.802 -3.041 ML 40 38 6 43 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 55 A U - - MP 45 44 6 49 6 2 9 64 84 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 46 44 6 49 6 1 4 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 54 G C - - MP 51 50 6 55 6 2 7 62 82 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.940 -3.189 -5.060 0.067 -5.511 -4.770 -0.826 -5.315 -4.455 3.682 -4.778 -0.896 -1.206 -4.597 -2.874 -3.933 ML 52 50 6 55 6 1 4 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 53 U A - - MP 57 56 6 61 4 2 6 60 80 -7.054 -7.261 -0.049 -5.676 -4.427 -4.257 -4.239 -0.536 -3.131 -4.781 1.201 -3.843 -4.241 -0.315 -4.603 -2.149 3.430 -4.569 -0.802 -3.041 ML 58 56 6 61 4 1 3 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 62 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 63 62 6 65 3 1 5 58 77 -8.063 -0.019 -6.718 1.084 -1.118 -1.194 -0.026 D 64 62 6 65 3 0 0 56 76 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 66 65 3 68 3 1 4 56 76 -8.448 -0.018 -6.765 -1.792 -3.044 1.767 -2.431 D 67 65 3 68 3 0 0 55 75 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 3 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - C - - MR 69 68 3 71 3 1 4 55 75 -8.448 -0.018 -6.765 -1.984 1.684 -2.814 -1.349 D 70 68 3 71 3 0 0 54 73 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - A - - MR 72 71 3 74 5 1 3 54 74 -7.180 -0.037 -6.996 -7.208 -8.100 1.759 -2.573 -2.185 -2.135 D 73 71 3 74 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 50 A U - - MP 75 74 3 79 6 2 4 53 73 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 76 74 3 79 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 49 C G - - MP 81 80 6 85 6 2 4 51 71 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.769 -4.694 -4.421 -0.907 -3.093 -4.804 3.613 -3.925 -4.479 -0.696 -4.715 -2.644 0.399 -4.823 -0.805 -3.311 ML 82 80 6 85 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 48 U A - - MP 87 86 6 91 4 2 2 49 69 -7.054 -7.261 -0.049 -5.676 -4.427 -4.257 -4.239 -0.536 -3.131 -4.781 1.201 -3.843 -4.241 -0.315 -4.603 -2.149 3.430 -4.569 -0.802 -3.041 ML 88 86 6 91 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 93 92 6 95 3 1 1 47 66 -8.063 -0.019 -6.718 1.036 -1.082 -1.171 0.047 D 94 92 6 95 3 0 0 46 65 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - - - ML 96 95 3 98 3 1 1 46 65 -8.063 -0.019 -6.718 -1.671 -1.635 -2.414 1.667 D 97 95 3 98 3 0 0 45 64 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - - - ML 99 98 3 101 3 1 1 45 64 -8.448 -0.018 -6.765 1.759 -2.573 -2.185 -2.135 D 100 98 3 101 3 0 0 44 63 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 47 - A - - MR 102 101 3 104 5 1 1 44 63 -7.180 -0.037 -6.996 -7.208 -8.100 1.759 -2.573 -2.185 -2.135 D 103 101 3 104 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 46 A U - - MP 105 104 3 109 6 2 2 43 62 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 106 104 3 109 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 45 G C - - MP 111 110 6 115 6 2 2 41 60 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.940 -3.189 -5.060 0.067 -5.511 -4.770 -0.826 -5.315 -4.455 3.682 -4.778 -0.896 -1.206 -4.597 -2.874 -3.933 ML 112 110 6 115 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 44 U A - - MP 117 116 6 121 6 2 2 39 58 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.427 -4.257 -4.239 -0.536 -3.131 -4.781 1.201 -3.843 -4.241 -0.315 -4.603 -2.149 3.430 -4.569 -0.802 -3.041 ML 118 116 6 121 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 43 A U - - MP 123 122 6 127 6 2 2 37 56 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 124 122 6 127 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 42 U A - - MP 129 128 6 133 6 2 2 35 54 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -4.427 -4.257 -4.239 -0.536 -3.131 -4.781 1.201 -3.843 -4.241 -0.315 -4.603 -2.149 3.430 -4.569 -0.802 -3.041 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 41 A U - - MP 135 134 6 139 6 2 2 33 52 -9.149 -9.088 -0.021 -7.865 -8.145 -8.540 -3.974 -2.959 -3.978 3.438 -4.408 -5.489 -0.096 -4.008 -3.863 0.882 -4.420 -0.407 -0.513 -4.646 -2.036 -2.801 ML 136 134 6 139 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 40 C G - - MP 141 140 6 145 4 2 2 31 50 -7.054 -7.261 -0.049 -5.676 -4.769 -4.694 -4.421 -0.907 -3.093 -4.804 3.613 -3.925 -4.479 -0.696 -4.715 -2.644 0.399 -4.823 -0.805 -3.311 ML 142 140 6 145 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - a - - - ML 147 146 6 149 3 1 1 28 47 -8.063 -0.019 -6.718 0.552 -0.913 -0.127 0.120 D 148 146 6 149 3 0 0 27 46 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - u - - - ML 150 149 3 152 3 1 1 27 46 -8.063 -0.019 -6.718 -0.420 -0.975 0.275 0.617 D 151 149 3 152 3 0 0 26 45 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - u - - - ML 153 152 3 155 3 1 1 26 45 -8.063 -0.019 -6.718 0.183 -0.833 -0.178 0.506 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - u - - - ML 156 155 3 158 3 1 1 25 44 -8.063 -0.019 -6.718 -0.420 -0.975 0.275 0.617 D 157 155 3 158 3 0 0 24 43 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - A - - - ML 159 158 3 161 3 1 1 24 43 -8.063 -0.019 -6.718 1.144 -1.523 -0.100 -0.973 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 162 161 3 164 3 1 1 23 41 -8.063 -0.019 -6.718 0.659 -1.499 0.619 -0.912 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - c - - - ML 165 164 3 167 3 1 1 21 40 -8.063 -0.019 -6.718 0.081 0.844 -1.393 -0.383 D 166 164 3 167 3 0 0 21 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - A - - - ML 168 167 3 170 3 1 1 20 39 -8.063 -0.019 -6.718 1.759 -2.573 -2.185 -2.135 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - u - - - ML 171 170 3 173 3 1 1 19 38 -2.700 -0.257 -6.718 -0.345 -0.122 -0.367 0.603 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 38 -1.900 -0.534 -4.600 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - G - - - ML 174 173 3 176 3 1 1 17 36 -8.063 -0.446 -1.930 0.081 -1.740 1.133 -1.152 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - g - - - ML 177 176 3 179 3 1 1 16 35 -7.643 -0.026 -6.297 -0.160 0.052 0.228 -0.157 D 178 176 3 179 3 0 0 15 34 -7.984 -0.316 -2.375 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - A - - - ML 180 179 3 182 3 1 1 15 33 -8.063 -0.019 -6.718 1.759 -2.573 -2.185 -2.135 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - A - - - ML 183 182 3 185 3 1 1 13 31 -8.063 -0.019 -6.718 1.144 -1.523 -0.100 -0.973 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - c - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 0.140 0.299 -1.131 0.276 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-728 ACC RF03400 DESC mir-728 microRNA precursor family LENG 62 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 20:14:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03400/CM NSEQ 4 EFFN 3.042969 CKSUM 2019138585 STATS LOCAL MSV -8.3774 0.71928 STATS LOCAL VITERBI -8.8468 0.71928 STATS LOCAL FORWARD -3.6461 0.71928 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.09272 1.74900 1.59262 1.24702 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 0.00000 * 1 0.23463 3.16261 2.11486 3.07535 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 2 0.23428 3.16469 2.11534 3.07817 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 3 0.23418 3.16531 2.11549 3.07901 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 4 3.21205 1.73525 3.04093 0.30710 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 5 2.78662 3.54858 0.12900 3.48569 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 6 3.33833 2.18718 3.12881 0.21257 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 7 0.23435 3.16429 2.11525 3.07762 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 8 2.78538 3.54692 0.12922 3.48344 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 9 3.33615 2.18699 3.12772 0.21275 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 10 0.57395 2.28408 2.34749 1.43035 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 11 3.01325 3.93015 0.10414 3.50220 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 12 0.23394 3.16672 2.11581 3.08093 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 13 3.52358 0.17335 3.33423 2.36427 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 14 3.34330 2.18761 3.13126 0.21216 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 15 0.60929 2.25408 2.32549 1.37217 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 16 2.90609 2.82066 3.43375 0.15843 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 17 0.11095 3.55073 3.24540 3.28707 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 18 0.23375 3.16788 2.11608 3.08251 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 19 2.78995 3.55302 0.12841 3.49175 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 20 3.34427 2.18770 3.13174 0.21208 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 21 0.23397 3.16656 2.11578 3.08071 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 22 3.34124 2.18743 3.13024 0.21233 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 23 0.23418 3.16532 2.11549 3.07903 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 24 3.51719 0.17385 3.33091 2.36308 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 25 0.98221 2.09580 1.45909 1.30896 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 26 1.78560 2.17617 1.13984 0.91890 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 27 1.26392 2.03928 1.49212 1.01490 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 28 1.78560 2.17617 1.13984 0.91890 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 29 0.53212 2.63783 1.43561 2.27154 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 30 0.89542 2.61424 0.89281 2.21793 30 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 31 1.35998 0.70167 2.53531 1.78177 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 32 0.11095 3.55073 3.24540 3.28707 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 33 1.70198 1.45198 1.62831 0.94853 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.22678 1.68986 3.99748 0.18834 1.76220 1.09861 0.40547 34 1.36301 2.80549 0.52069 2.41326 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.37559 3.99748 1.22160 1.46634 0.26236 1.09861 0.40547 35 1.57155 1.30759 1.15883 1.57044 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05208 3.67397 3.67397 1.46634 0.26236 0.11742 2.20015 36 0.11095 3.55073 3.24540 3.28707 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 37 0.53212 2.63783 1.43561 2.27154 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 38 1.29929 1.12087 2.27068 1.21054 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 39 2.64248 3.49729 0.14970 3.28166 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 40 3.30005 2.44594 2.97381 0.19193 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 41 0.24074 3.32059 2.02388 3.08614 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 42 3.30466 2.44666 2.97576 0.19153 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 43 0.24028 3.32394 2.02439 3.08991 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 44 3.69126 0.15277 3.40004 2.48454 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 45 3.31963 2.44897 2.98207 0.19024 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 46 0.11095 3.55073 3.24540 3.28707 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 47 0.24032 3.32360 2.02434 3.08953 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 48 2.64868 3.50665 0.14839 3.29239 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 49 3.31869 2.44883 2.98167 0.19032 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 50 0.11095 3.55073 3.24540 3.28707 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 51 3.22226 0.13920 3.79336 2.69467 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 52 0.24125 3.31688 2.02331 3.08196 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 53 3.66605 0.15444 3.38821 2.47985 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 54 3.29723 2.44550 2.97261 0.19218 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 55 0.24101 3.31863 2.02358 3.08394 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 56 3.67208 0.15403 3.39106 2.48098 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 57 2.30955 3.22410 0.21245 2.95074 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 58 3.30532 2.44676 2.97604 0.19147 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 59 3.30941 2.44739 2.97777 0.19112 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 60 3.31532 2.44831 2.98026 0.19061 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 61 1.38282 2.15053 2.40625 0.61146 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.03741 3.99748 3.99748 1.46634 0.26236 1.09861 0.40547 62 2.22968 0.61094 2.82258 1.23737 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.01888 3.97895 * 1.46634 0.26236 0.00000 * //