INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1994 ACC RF03386 DESC mir-1994 microRNA precursor family STATES 202 NODES 48 CLEN 66 W 125 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 07:15:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03386/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.332031 CKSUM 1145608016 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.40 NC 46.90 EFP7GF -8.6112 0.72335 ECMLC 0.61009 -5.81762 2.95422 1600000 253138 0.004740 ECMGC 0.45391 -15.36181 -3.15062 1600000 102156 0.003916 ECMLI 0.60511 -4.66482 3.89395 1600000 212997 0.005634 ECMGI 0.47723 -11.21034 -0.35507 1600000 71109 0.005625 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 125 201 -7.432 -7.639 -0.283 -2.582 IL 1 1 2 1 4 1 20 128 203 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 127 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - u - - - ML 3 2 3 5 3 1 19 126 201 -8.570 -0.016 -6.888 -0.349 -0.000 -0.061 0.330 D 4 2 3 5 3 0 14 123 198 -6.698 -1.811 -0.503 IL 5 5 3 5 3 1 18 126 201 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - u - - MR 6 5 3 8 3 1 18 125 200 -8.570 -0.016 -6.888 0.302 -0.016 -1.115 0.397 D 7 5 3 8 3 0 13 122 197 -7.733 -2.911 -0.214 IR 8 8 3 8 3 1 18 125 200 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - G - - MR 9 8 3 11 5 1 17 124 199 -7.296 -0.034 -7.111 -7.323 -8.215 -2.063 -3.352 1.813 -2.739 D 10 8 3 11 5 0 13 122 197 -6.248 -1.603 -0.914 -5.306 -3.300 IR 11 11 3 11 5 1 16 124 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 77 c g - - MP 12 11 3 16 6 2 17 123 198 -9.206 -9.146 -0.020 -7.922 -8.202 -8.597 -3.986 -3.928 -3.820 -0.122 -2.668 -4.358 2.956 -3.406 -3.826 0.092 -4.196 -1.876 2.119 -4.105 -0.326 -2.673 ML 13 11 3 16 6 1 14 121 197 -7.305 -7.651 -0.488 -2.060 -7.501 -5.031 -0.575 1.059 -1.326 -0.241 MR 14 11 3 16 6 1 11 121 196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 8 118 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 14 122 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 14 122 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 76 c g - - MP 18 17 6 22 4 2 15 121 196 -7.432 -7.639 -0.038 -6.053 -3.019 -2.995 -3.111 1.453 -2.526 -3.911 2.164 -3.066 -3.112 0.780 -3.632 -1.080 1.802 -3.274 0.881 -2.081 ML 19 17 6 22 4 1 12 120 195 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 9 119 194 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 8 118 193 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 13 121 196 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 13 120 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - u - - - ML 24 23 6 26 3 1 13 119 194 -8.418 -0.015 -7.072 0.083 -0.145 -1.272 0.698 D 25 23 6 26 3 0 7 117 192 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 119 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - c - - - ML 27 26 3 29 3 1 12 118 193 -8.783 -0.014 -7.101 0.157 0.297 -0.175 -0.376 D 28 26 3 29 3 0 6 116 191 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 10 118 193 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 75 - C - - MR 30 29 3 32 3 1 12 117 192 -8.783 -0.014 -7.101 -1.333 1.182 -2.202 0.159 D 31 29 3 32 3 0 4 114 190 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 117 192 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 74 - U - - MR 33 32 3 35 3 1 11 116 191 -8.783 -0.014 -7.101 -2.350 -2.202 -3.116 1.795 D 34 32 3 35 3 0 4 113 189 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 116 191 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 73 - C - - MR 36 35 3 38 5 1 11 115 190 -7.497 -0.029 -7.312 -7.525 -8.416 -2.843 1.824 -3.658 -2.048 D 37 35 3 38 5 0 3 113 188 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 7 115 190 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 72 G C - - MP 39 38 3 43 6 2 12 114 189 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 40 38 3 43 6 1 5 111 187 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 5 111 186 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 2 107 182 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 113 188 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 113 188 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 71 G C - - MP 45 44 6 49 6 2 11 112 187 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 46 44 6 49 6 1 5 110 185 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 5 109 185 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 105 181 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 111 186 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 111 186 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 70 g u - - MP 51 50 6 55 6 2 10 110 185 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.324 -2.396 -3.537 1.886 -3.994 -4.489 -0.012 -3.706 -3.330 1.161 -3.793 2.376 -0.257 -3.827 -1.800 0.970 ML 52 50 6 55 6 1 4 108 183 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 107 183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 104 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 109 184 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 109 184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 69 a c - - MP 57 56 6 61 6 2 9 108 183 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -2.973 1.904 -3.145 0.739 -3.191 -3.978 0.562 -3.327 -3.063 1.090 -3.545 -0.383 0.214 1.874 -1.152 -2.182 ML 58 56 6 61 6 1 4 106 181 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 105 181 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 102 178 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 107 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 107 182 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 68 G C - - MP 63 62 6 67 6 2 8 106 181 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -4.527 0.613 -4.564 0.349 -5.363 -4.759 -0.730 -4.993 -4.346 3.450 -4.694 -0.720 -1.001 -4.331 -2.711 -3.486 ML 64 62 6 67 6 1 4 104 179 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 104 179 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 1 101 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 105 180 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 105 180 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 67 G U - - MP 69 68 6 73 4 2 6 104 179 -7.432 -7.639 -0.038 -6.053 -4.049 -2.762 -4.238 2.030 -5.506 -6.068 -1.057 -4.306 -3.870 0.802 -4.435 3.090 -1.244 -5.037 -2.965 -2.905 ML 70 68 6 73 4 1 3 103 178 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 2 102 177 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 1 101 176 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 4 104 179 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 4 103 179 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 75 74 6 77 5 1 5 102 177 -7.497 -0.029 -7.312 -7.525 -8.416 1.176 -1.335 -1.435 -0.038 D 76 74 6 77 5 0 0 100 175 -4.959 -0.803 -4.221 -2.596 -2.508 IL 77 77 3 77 5 1 3 102 177 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 66 C G - - MP 78 77 3 82 6 2 6 101 176 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.745 -3.768 1.113 -0.255 -2.794 -4.285 3.121 -3.466 -3.717 -0.111 -4.126 -1.931 0.720 -3.939 -0.561 -2.673 ML 79 77 3 82 6 1 2 99 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 2 99 174 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 95 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 3 100 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 100 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 65 A U - - MP 84 83 6 88 6 2 5 99 174 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.940 -2.812 -4.067 3.114 -5.065 -5.799 -0.751 -4.213 -3.838 0.968 -4.430 1.784 -0.941 -4.730 -2.632 -2.821 ML 85 83 6 88 6 1 2 97 172 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 97 172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 95 170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 98 173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 98 173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 64 c g - - MP 90 89 6 94 4 2 4 97 172 -7.432 -7.639 -0.038 -6.053 -4.481 -4.519 -4.187 -0.746 -2.877 -4.598 2.920 -3.679 -4.222 -0.596 -4.519 -2.576 0.653 -4.537 2.256 -3.067 ML 91 89 6 94 4 1 1 96 171 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 95 170 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 94 169 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 2 97 172 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 2 96 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - u - - - ML 96 95 6 98 3 1 2 95 170 -8.783 -0.014 -7.101 -0.630 -1.220 0.491 0.603 D 97 95 6 98 3 0 0 93 168 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 95 170 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 63 - U - - MR 99 98 3 101 5 1 2 94 169 -7.497 -0.029 -7.312 -7.525 -8.416 -2.350 -2.202 -3.116 1.795 D 100 98 3 101 5 0 0 92 167 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 94 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 62 C G - - MP 102 101 3 106 6 2 3 93 168 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.562 -5.553 -5.070 -1.725 -3.604 -5.347 3.773 -4.517 -5.173 -1.592 -5.305 -3.535 -0.217 -5.560 -1.355 -3.986 ML 103 101 3 106 6 1 1 91 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 90 165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 86 161 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 92 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 92 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 61 U A - - MP 108 107 6 112 6 2 3 91 166 -2.691 -9.251 -0.262 -8.027 -8.307 -8.702 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 109 107 6 112 6 1 1 88 164 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 88 163 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 84 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 90 165 -4.030 -4.293 -0.234 -5.948 -6.724 -6.385 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 90 165 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 60 G C - - MP 114 113 6 118 6 2 3 89 164 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 115 113 6 118 6 1 1 87 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 86 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 83 158 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 88 163 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 88 163 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 59 U A - - MP 120 119 6 124 6 2 2 87 162 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 121 119 6 124 6 1 1 85 160 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 84 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 81 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 86 161 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 86 161 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 58 C G - - MP 126 125 6 130 6 2 2 85 160 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.562 -5.553 -5.070 -1.725 -3.604 -5.347 3.773 -4.517 -5.173 -1.592 -5.305 -3.535 -0.217 -5.560 -1.355 -3.986 ML 127 125 6 130 6 1 1 83 158 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 83 158 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 80 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 84 159 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 84 159 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 57 U A - - MP 132 131 6 136 4 2 2 83 158 -7.432 -7.639 -0.038 -6.053 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 133 131 6 136 4 1 1 82 157 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 81 156 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 80 155 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 83 158 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 82 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - a - - - ML 138 137 6 140 3 1 1 81 156 -8.418 -0.015 -7.072 0.629 -0.307 -0.103 -0.485 D 139 137 6 140 3 0 0 78 154 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 81 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - C - - - ML 141 140 3 143 3 1 1 80 155 -2.550 -0.283 -7.101 -2.843 1.824 -3.658 -2.048 D 142 140 3 143 3 0 0 78 153 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 81 156 -0.885 -1.180 -5.851 0.000 0.000 0.000 0.000 [ MATR 31 ] - 56 - G - - MR 144 143 3 146 5 1 1 78 153 -7.497 -0.029 -7.312 -7.525 -8.416 -2.506 -3.846 1.867 -3.224 D 145 143 3 146 5 0 0 76 152 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 78 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 55 A U - - MP 147 146 3 151 6 2 2 77 152 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.940 -2.812 -4.067 3.114 -5.065 -5.799 -0.751 -4.213 -3.838 0.968 -4.430 1.784 -0.941 -4.730 -2.632 -2.821 ML 148 146 3 151 6 1 1 75 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 75 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 72 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 76 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 76 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 54 u a - - MP 153 152 6 157 6 2 2 75 150 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.429 -3.059 -3.493 0.569 -3.033 -4.393 1.264 -3.439 -3.451 0.826 -3.965 1.225 2.683 -3.748 -0.736 -2.397 ML 154 152 6 157 6 1 1 74 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 73 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 71 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 74 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 74 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 53 G C - - MP 159 158 6 163 4 2 2 73 148 -7.432 -7.639 -0.038 -6.053 -3.541 -2.580 0.665 0.977 -4.010 -4.319 0.329 -3.915 -3.679 3.031 -4.095 -0.260 0.022 -3.587 -1.575 -2.496 ML 160 158 6 163 4 1 1 72 147 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 71 146 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 70 145 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 73 148 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 73 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - - - ML 165 164 6 167 3 1 1 71 146 -8.418 -0.015 -7.072 -1.236 -0.104 -2.012 1.261 D 166 164 6 167 3 0 0 69 144 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 72 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - a - - - ML 168 167 3 170 3 1 1 70 145 -8.418 -0.015 -7.072 0.225 -0.177 -0.311 0.190 D 169 167 3 170 3 0 0 68 143 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 71 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - a - - - ML 171 170 3 173 3 1 1 69 144 -8.418 -0.015 -7.072 0.535 -0.112 -1.189 0.247 D 172 170 3 173 3 0 0 67 142 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 70 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - C - - - ML 174 173 3 176 3 1 1 68 143 -8.418 -0.015 -7.072 -1.424 1.274 -2.297 0.007 D 175 173 3 176 3 0 0 65 141 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 69 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - u - - - ML 177 176 3 179 3 1 1 67 142 -8.418 -0.015 -7.072 0.150 -0.156 -0.204 0.169 D 178 176 3 179 3 0 0 64 139 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 68 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - a - - - ML 180 179 3 182 3 1 1 66 141 -8.418 -0.015 -7.072 0.208 -0.261 -0.164 0.161 D 181 179 3 182 3 0 0 63 138 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 67 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 183 182 3 185 3 1 1 65 141 -8.418 -0.015 -7.072 -0.783 -1.193 -0.330 1.128 D 184 182 3 185 3 0 0 60 135 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 66 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - - - ML 186 185 3 188 3 1 1 64 140 -2.474 -0.949 -1.727 1.858 -3.286 -2.831 -2.922 D 187 185 3 188 3 0 0 53 128 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 70 146 -0.353 -2.274 -6.603 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - u - - - ML 189 188 3 191 3 1 1 16 35 -7.915 -0.021 -6.569 -0.344 -0.921 0.348 0.497 D 190 188 3 191 3 0 0 14 33 -8.417 -3.930 -0.102 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - u - - - ML 192 191 3 194 3 1 1 15 33 -7.915 -0.021 -6.569 -0.665 0.420 -1.437 0.733 D 193 191 3 194 3 0 0 13 32 -8.417 -0.227 -2.809 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 51 - A - - - ML 195 194 3 197 3 1 1 13 31 -8.418 -0.015 -7.072 1.205 -0.318 -1.506 -0.886 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 52 - c - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.529 0.454 -0.319 0.184 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1994 ACC RF03386 DESC mir-1994 microRNA precursor family LENG 66 MAXL 181 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 07:15:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03386/CM NSEQ 4 EFFN 3.730469 CKSUM 1145608016 STATS LOCAL MSV -8.1072 0.72335 STATS LOCAL VITERBI -9.1204 0.72335 STATS LOCAL FORWARD -3.5975 0.72335 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55148 1.35403 1.34847 1.30847 1.38629 1.38629 1.38629 1.38629 0.68822 1.08341 1.83829 0.09273 2.42406 0.00000 * 1 1.65579 1.37463 1.41627 1.15993 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03837 3.97286 3.97286 1.46634 0.26236 0.18462 1.78033 2 2.63291 0.65959 2.46424 1.12087 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 1.61555 1.20329 1.93482 1.03124 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 1.33118 1.48289 2.30319 0.89425 5 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 1.28286 1.16042 1.49976 1.68082 6 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 2.96231 3.80047 0.10288 3.74202 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 2.96192 3.79991 0.10294 3.74126 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 1.35516 2.77537 0.72727 1.62688 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 0.97330 2.38111 1.77782 1.01967 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.70775 3.23419 0.30911 3.09592 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 1.30336 3.46318 0.42068 3.20763 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 0.54959 2.36558 2.43814 1.42049 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 1.58881 0.55195 2.62722 1.91237 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 0.55067 3.28143 1.08417 3.04318 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 3.14758 0.70527 2.95832 0.88876 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 1.87335 2.28472 1.02170 0.95554 17 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.80696 0.13126 3.64490 2.59468 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.68369 2.45952 3.50292 0.15166 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.42767 1.10308 4.12713 0.09452 2.40580 1.09861 0.40547 19 2.94679 3.77815 0.10514 3.71188 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.66096 2.45711 3.49081 0.15300 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 3.78530 0.13252 3.63302 2.59053 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 3.66832 2.45789 3.49474 0.15256 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.94095 1.59327 1.45095 1.75948 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.52360 0.10416 4.07778 2.94725 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.23844 1.62954 4.12713 1.12105 0.39443 1.09861 0.40547 25 0.55093 3.27908 1.08437 3.04055 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.24924 1.86892 1.32366 0.74639 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 1.42078 2.50098 0.53807 2.37954 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.32534 1.45663 2.86691 0.49044 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.23110 1.50381 1.59994 1.25934 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 1.00601 1.45743 2.24426 1.21914 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.46275 0.47524 3.07799 1.39833 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.28593 1.48828 1.52224 1.27431 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.24404 1.56426 1.49428 1.27966 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 1.99075 2.27166 1.61430 0.57761 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 0.08468 3.80719 3.48016 3.56918 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.70251 1.62954 1.17557 2.05577 0.13696 1.09861 0.40547 36 1.65406 2.05615 1.12484 1.03260 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04667 3.78110 3.78110 1.46634 0.26236 3.05097 0.04847 37 1.89322 1.07351 2.43386 0.86772 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04667 3.78110 3.78110 1.46634 0.26236 0.09941 2.35782 38 0.52714 1.60224 2.49932 2.07050 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.79284 1.04841 1.60227 1.26734 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.63106 0.60947 1.59918 1.70212 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 0.81447 2.16535 1.70079 1.34754 54 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 3.25794 2.11990 3.07306 0.22915 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 3.25954 4.20231 0.07961 3.76560 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 0.17313 3.68809 2.29297 3.41161 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.87027 3.79830 0.11373 3.56103 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 0.17323 3.68702 2.29278 3.41047 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 3.88539 0.12545 3.63612 2.64500 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 0.17173 3.70335 2.29563 3.42787 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 2.88551 3.82292 0.11130 3.58845 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.15483 3.02984 3.68892 0.12326 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 2.25218 3.11416 0.22867 2.90368 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 3.23595 2.11812 3.06189 0.23115 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 2.17606 2.79099 0.28776 2.58751 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 3.39704 2.22419 3.24357 0.19925 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 3.31790 0.22246 3.05429 2.15358 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.53348 0.42641 2.18917 1.85943 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 2.81429 1.95331 2.57507 0.32559 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.92657 0.12330 3.65638 2.65259 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 3.94062 0.12259 3.66319 2.65512 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.52360 0.10416 4.07778 2.94725 73 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.15483 3.02984 3.68892 0.12326 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.39532 0.53907 3.00765 1.28679 75 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 1.40619 2.11250 0.89263 1.49428 76 g - - > 1.38629 1.38629 1.38629 1.38629 0.19264 4.12713 1.83829 1.46634 0.26236 1.09861 0.40547 64 1.22577 2.62392 0.60070 2.45896 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03837 3.97286 3.97286 1.46634 0.26236 2.47347 0.08806 65 2.95202 3.86189 0.11147 3.43519 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.03837 3.97286 3.97286 1.46634 0.26236 2.47347 0.08806 66 1.17396 1.38767 2.18831 1.11140 79 u - - : 1.38629 1.38629 1.38629 1.38629 0.01937 3.95386 * 1.46634 0.26236 0.00000 * //