INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7180 ACC RF03384 DESC mir-7180 microRNA precursor family STATES 178 NODES 41 CLEN 58 W 74 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:22:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03384/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.714844 CKSUM 56177380 NULL 0.000 0.000 0.000 0.000 GA 78.00 TC 78.40 NC 76.40 EFP7GF -5.5752 0.72853 ECMLC 0.67042 -5.35443 3.51737 1600000 459510 0.002611 ECMGC 0.46935 -15.67479 -2.98332 1600000 154536 0.002588 ECMLI 0.66405 -3.81300 4.56883 1600000 313646 0.003826 ECMGI 0.48033 -11.67612 -0.09637 1600000 104144 0.003841 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -6.857 -7.064 -0.057 -5.478 IL 1 1 2 1 4 1 16 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 15 74 94 -8.276 -0.020 -6.594 1.680 -2.203 -1.852 -1.729 D 4 2 3 5 3 0 10 73 93 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 14 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - U - - MR 6 5 3 8 3 1 15 73 93 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 7 5 3 8 3 0 8 71 91 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 13 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 57 - C - - MR 9 8 3 11 3 1 14 72 92 -8.276 -0.020 -6.594 -1.539 1.565 -2.355 -0.994 D 10 8 3 11 3 0 7 71 90 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 12 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 56 - C - - MR 12 11 3 14 5 1 14 71 91 -7.020 -0.041 -6.836 -7.048 -7.940 -1.539 1.565 -2.355 -0.994 D 13 11 3 14 5 0 6 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 10 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 55 G C - - MP 15 14 3 19 6 2 15 70 90 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 16 14 3 19 6 1 8 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 8 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 9 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 10 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 54 U A - - MP 21 20 6 25 6 2 14 68 88 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.018 -3.837 -3.875 -0.145 -2.855 -4.455 1.470 -3.538 -3.881 0.136 -4.263 -1.742 3.239 -4.175 -0.535 -2.722 ML 22 20 6 25 6 1 7 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 7 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 9 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 9 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 53 g u - - MP 27 26 6 31 6 2 12 66 86 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.512 -2.322 -3.669 1.196 -4.299 -5.026 0.074 -3.707 -3.361 1.499 -3.876 2.964 -0.286 -4.255 -1.867 -2.393 ML 28 26 6 31 6 1 7 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 6 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 2 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 8 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 9 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 52 u g - - MP 33 32 6 37 6 2 11 64 84 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.921 -3.835 -3.662 -0.187 -2.474 -4.116 1.808 -3.230 -3.701 0.036 -4.011 -1.842 0.983 -4.023 2.890 -2.581 ML 34 32 6 37 6 1 6 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 2 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 8 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 8 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 51 A U - - MP 39 38 6 43 6 2 9 62 82 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.656 -2.723 -3.684 3.236 -3.955 -5.006 0.336 -3.734 -3.582 1.225 -4.123 -0.222 -0.082 -4.216 -1.606 -2.526 ML 40 38 6 43 6 1 6 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 2 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 7 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 50 C G - - MP 45 44 6 49 4 2 7 60 80 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 46 44 6 49 4 1 5 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 3 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 2 59 79 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 6 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - U - - - ML 51 50 6 53 3 1 6 58 77 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 52 50 6 53 3 0 1 56 76 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 4 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 49 - U - - MR 54 53 3 56 5 1 6 57 76 -7.020 -0.041 -6.836 -7.048 -7.940 -1.332 -1.356 -2.057 1.571 D 55 53 3 56 5 0 0 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 48 u g - - MP 57 56 3 61 6 2 6 56 75 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.921 -3.835 -3.662 -0.187 -2.474 -4.116 1.808 -3.230 -3.701 0.036 -4.011 -1.842 0.983 -4.023 2.890 -2.581 ML 58 56 3 61 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 2 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 3 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 47 C G - - MP 63 62 6 67 6 2 5 54 73 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 64 62 6 67 6 1 2 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 46 C G - - MP 69 68 6 73 4 2 3 52 71 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 70 68 6 73 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 52 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 51 70 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 2 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 75 74 6 77 3 1 2 49 69 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 76 74 6 77 3 0 0 48 68 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - U - - MR 78 77 3 80 5 1 2 48 68 -7.020 -0.041 -6.836 -7.048 -7.940 -1.332 -1.356 -2.057 1.571 D 79 77 3 80 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 44 G C - - MP 81 80 3 85 6 2 3 47 67 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 82 80 3 85 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 43 a u - - MP 87 86 6 91 6 2 2 45 65 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -3.247 -2.297 -3.362 2.366 -3.877 -4.579 0.353 -3.544 -3.236 1.699 -3.768 1.942 0.086 -3.741 -1.540 -2.212 ML 88 86 6 91 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 42 G C - - MP 93 92 6 97 6 2 2 43 63 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 94 92 6 97 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 41 G C - - MP 99 98 6 103 6 2 2 41 61 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 100 98 6 103 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 40 C G - - MP 105 104 6 109 6 2 2 39 59 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 106 104 6 109 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 39 C G - - MP 111 110 6 115 4 2 2 37 57 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 112 110 6 115 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 39 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 117 116 6 119 3 1 1 35 54 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 118 116 6 119 3 0 0 34 53 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 38 - U - - MR 120 119 3 122 5 1 1 34 53 -7.020 -0.041 -6.836 -7.048 -7.940 -1.332 -1.356 -2.057 1.571 D 121 119 3 122 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 37 C G - - MP 123 122 3 127 4 2 2 33 52 -6.857 -7.064 -0.057 -5.478 -4.382 -4.273 -4.100 -0.521 -2.856 -4.533 3.496 -3.649 -4.144 -0.255 -4.422 -2.218 0.675 -4.462 -0.559 -2.990 ML 124 122 3 127 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 3 127 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 129 128 6 131 3 1 1 30 49 -8.276 -0.020 -6.594 -1.332 -1.356 -2.057 1.571 D 130 128 6 131 3 0 0 29 48 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 36 - U - - MR 132 131 3 134 5 1 1 29 48 -7.020 -0.041 -6.836 -7.048 -7.940 -1.332 -1.356 -2.057 1.571 D 133 131 3 134 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 35 G C - - MP 135 134 3 139 6 2 2 28 47 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 136 134 3 139 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 34 G C - - MP 141 140 6 145 6 2 2 26 45 -9.074 -9.013 -0.022 -7.789 -8.069 -8.464 -4.581 -3.018 -4.667 0.306 -5.006 -4.630 -0.410 -4.897 -4.221 3.597 -4.570 -0.711 -0.800 -4.362 -2.439 -3.546 ML 142 140 6 145 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 33 g u - - MP 147 146 6 151 4 2 2 24 43 -6.857 -7.064 -0.057 -5.478 -3.512 -2.322 -3.669 1.196 -4.299 -5.026 0.074 -3.707 -3.361 1.499 -3.876 2.964 -0.286 -4.255 -1.867 -2.393 ML 148 146 6 151 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - u - - - ML 153 152 6 155 3 1 1 21 40 -7.880 -0.022 -6.534 -0.639 0.430 -1.409 0.709 D 154 152 6 155 3 0 0 20 39 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - A - - - ML 156 155 3 158 3 1 1 20 39 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 157 155 3 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - U - - - ML 159 158 3 161 3 1 1 19 38 -7.880 -0.022 -6.534 -1.332 -1.356 -2.057 1.571 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 162 161 3 164 3 1 1 18 36 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - u - - - ML 165 164 3 167 3 1 1 16 35 -7.880 -0.022 -6.534 0.540 -0.807 -1.010 0.564 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - A - - - ML 168 167 3 170 3 1 1 15 33 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 171 170 3 173 3 1 1 13 32 -7.880 -0.022 -6.534 1.680 -2.203 -1.852 -1.729 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - U - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.332 -1.356 -2.057 1.571 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7180 ACC RF03384 DESC mir-7180 microRNA precursor family LENG 58 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:22:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03384/CM NSEQ 2 EFFN 1.628906 CKSUM 56177380 STATS LOCAL MSV -7.9543 0.72853 STATS LOCAL VITERBI -9.3372 0.72853 STATS LOCAL FORWARD -2.9271 0.72853 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67572 1.36235 1.31500 1.24377 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23431 2.86460 2.62614 2.53179 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.34611 2.84304 0.24260 2.78991 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.58725 1.62981 2.28856 0.46618 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.76735 2.51531 0.41745 2.41182 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.59871 1.40811 2.33966 0.53671 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.53107 2.34986 1.53172 2.29782 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.82766 0.35162 2.55156 1.83671 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.26593 2.29030 2.76601 0.31181 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.59445 1.40839 2.33804 0.53741 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.82685 0.35175 2.55123 1.83658 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.82820 0.35153 2.55178 1.83679 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.26593 2.29030 2.76601 0.31181 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.34607 2.84300 0.24261 2.78985 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 1.07333 2.33332 0.79998 2.19085 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.34873 2.84556 0.24181 2.79359 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.34878 2.84561 0.24179 2.79367 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.82816 0.35154 2.55176 1.83678 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.82765 0.35162 2.55155 1.83670 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.26593 2.29030 2.76601 0.31181 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.82285 0.35241 2.54960 1.83598 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.26593 2.29030 2.76601 0.31181 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.34643 2.84335 0.24250 2.79036 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.34828 2.84513 0.24194 2.79297 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.76740 2.51538 0.41742 2.41191 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.81052 1.09817 2.34144 0.89953 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23431 2.86460 2.62614 2.53179 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.26593 2.29030 2.76601 0.31181 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.23431 2.86460 2.62614 2.53179 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.01563 1.93485 2.07385 1.00054 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23431 2.86460 2.62614 2.53179 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23431 2.86460 2.62614 2.53179 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.26593 2.29030 2.76601 0.31181 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.63389 1.59950 2.32268 0.46491 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 3.01767 0.28189 2.67759 2.05571 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.02038 0.28153 2.67865 2.05623 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.26593 2.29030 2.76601 0.31181 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.11296 2.72083 0.30357 2.58863 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.26593 2.29030 2.76601 0.31181 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.11024 2.71772 0.30472 2.58448 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.11061 2.71814 0.30456 2.58504 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.01341 0.28246 2.67592 2.05488 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.01523 0.28222 2.67664 2.05523 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.41554 1.47752 2.14079 0.57108 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.02007 0.28157 2.67853 2.05617 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.26593 2.29030 2.76601 0.31181 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.11154 2.71921 0.30417 2.58647 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.11219 2.71995 0.30390 2.58745 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.90072 2.51263 0.39397 2.35272 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.26593 2.29030 2.76601 0.31181 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.11024 2.71773 0.30472 2.58448 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.52962 1.78446 2.16582 0.44978 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.89940 2.51108 0.39474 2.35067 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.63378 1.59950 2.32264 0.46493 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.53042 2.46682 1.46632 2.34328 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.02011 0.28157 2.67854 2.05618 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.39558 0.32068 2.95885 2.02994 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.39558 0.32068 2.95885 2.02994 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.26593 2.29030 2.76601 0.31181 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //