INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1976 ACC RF03383 DESC mir-1976 microRNA precursor family STATES 160 NODES 34 CLEN 52 W 67 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 17:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03383/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.769531 CKSUM 258074523 NULL 0.000 0.000 0.000 0.000 GA 71.00 TC 71.40 NC 65.90 EFP7GF -5.9819 0.73099 ECMLC 0.66969 -5.04627 3.71135 1600000 422926 0.002837 ECMGC 0.42816 -17.81072 -3.00582 1600000 226462 0.001766 ECMLI 0.62763 -4.54559 4.53590 1600000 358585 0.003346 ECMGI 0.44909 -13.23664 -0.32539 1600000 131897 0.003033 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 67 87 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 IL 1 1 2 1 6 1 5 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 5 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 52 g u - - MP 3 2 3 7 6 2 9 67 87 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.539 -2.338 -3.699 1.180 -4.352 -5.077 0.028 -3.733 -3.382 1.462 -3.899 2.997 -0.332 -4.301 -1.914 -2.416 ML 4 2 3 7 6 1 3 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 3 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 4 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 5 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 51 C G - - MP 9 8 6 13 6 2 9 65 85 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 10 8 6 13 6 1 3 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 50 A U - - MP 15 14 6 19 6 2 8 63 83 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 16 14 6 19 6 1 3 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 49 G C - - MP 21 20 6 25 6 2 8 61 81 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 22 20 6 25 6 1 3 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 48 C G - - MP 27 26 6 31 6 2 8 59 79 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 28 26 6 31 6 1 2 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 47 A U - - MP 33 32 6 37 6 2 7 57 77 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 34 32 6 37 6 1 2 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 46 A U - - MP 39 38 6 43 6 2 7 55 75 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 40 38 6 43 6 1 2 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 45 G C - - MP 45 44 6 49 6 2 6 53 73 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 46 44 6 49 6 1 2 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 44 G C - - MP 51 50 6 55 6 2 5 51 71 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 52 50 6 55 6 1 2 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 43 A U - - MP 57 56 6 61 4 2 3 49 69 -6.881 -7.088 -0.056 -5.502 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 58 56 6 61 4 1 1 50 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 63 62 6 65 3 1 2 47 66 -8.297 -0.019 -6.614 1.691 -2.247 -1.891 -1.777 D 64 62 6 65 3 0 0 45 65 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 42 - C - - MR 66 65 3 68 5 1 1 46 65 -7.039 -0.041 -6.855 -7.067 -7.959 -1.591 1.581 -2.410 -1.036 D 67 65 3 68 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 41 G C - - MP 69 68 3 73 6 2 3 45 64 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 70 68 3 73 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 40 G C - - MP 75 74 6 79 6 2 2 43 62 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 76 74 6 79 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 39 C G - - MP 81 80 6 85 6 2 2 41 60 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 82 80 6 85 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 38 A U - - MP 87 86 6 91 6 2 2 39 58 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 88 86 6 91 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 37 G C - - MP 93 92 6 97 6 2 2 37 56 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 94 92 6 97 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 36 G C - - MP 99 98 6 103 4 2 2 35 54 -6.803 -8.048 -0.084 -4.502 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 100 98 6 103 4 1 1 34 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 34 53 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 32 51 -12.737 -14.007 -2.036 -0.404 IL 103 103 5 103 4 1 1 34 53 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 34 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 35 - U - - MR 105 104 6 107 5 1 1 33 52 -7.039 -0.041 -6.855 -7.067 -7.959 -1.372 -1.388 -2.099 1.584 D 106 104 6 107 5 0 0 31 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 34 G C - - MP 108 107 3 112 6 2 2 32 51 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 109 107 3 112 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 33 G C - - MP 114 113 6 118 4 2 2 30 49 -6.881 -7.088 -0.056 -5.502 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 115 113 6 118 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - - - ML 120 119 6 122 3 1 1 27 46 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 121 119 6 122 3 0 0 26 45 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 32 - U - - MR 123 122 3 125 5 1 1 26 45 -7.039 -0.041 -6.855 -7.067 -7.959 -1.372 -1.388 -2.099 1.584 D 124 122 3 125 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 31 C G - - MP 126 125 3 130 4 2 2 25 44 -6.803 -8.048 -0.084 -4.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 127 125 3 130 4 1 1 24 43 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 4 1 1 24 43 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 129 125 3 130 4 0 0 22 41 -12.737 -14.007 -2.036 -0.404 IL 130 130 5 130 4 1 1 24 43 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 30 - U - - MR 132 131 6 134 5 1 1 23 42 -7.039 -0.041 -6.855 -7.067 -7.959 -1.372 -1.388 -2.099 1.584 D 133 131 6 134 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 29 C G - - MP 135 134 3 139 4 2 2 22 41 -6.881 -7.088 -0.056 -5.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 136 134 3 139 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 3 139 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - U - - - ML 141 140 6 143 3 1 1 19 37 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 142 140 6 143 3 0 0 18 37 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - a - - - ML 144 143 3 146 3 1 1 18 36 -7.902 -0.022 -6.556 0.694 -1.343 0.480 -0.752 D 145 143 3 146 3 0 0 17 36 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - A - - - ML 147 146 3 149 3 1 1 16 35 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 150 149 3 152 3 1 1 15 33 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - G - - - ML 153 152 3 155 3 1 1 13 32 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -1.372 -1.388 -2.099 1.584 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1976 ACC RF03383 DESC mir-1976 microRNA precursor family LENG 52 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 17:47:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03383/CM NSEQ 2 EFFN 1.636719 CKSUM 258074523 STATS LOCAL MSV -7.7540 0.73099 STATS LOCAL VITERBI -8.9716 0.73099 STATS LOCAL FORWARD -2.6983 0.73099 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74370 1.29391 1.15813 1.44030 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.77486 2.52895 0.41151 2.42929 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.85076 0.34702 2.56409 1.84252 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.52725 2.35703 1.53499 2.30648 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.35528 2.85405 0.23961 2.80364 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.83702 0.34922 2.55853 1.84046 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.52812 2.35505 1.53495 2.30323 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.52826 2.35474 1.53495 2.30272 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.35154 2.85043 0.24074 2.79835 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.35110 2.85001 0.24087 2.79773 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.52852 2.35416 1.53494 2.30178 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23314 2.86904 2.63013 2.53664 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.34843 2.84743 0.24168 2.79395 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.35060 2.84953 0.24102 2.79702 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.83233 0.34998 2.55663 1.83975 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.52839 2.35446 1.53494 2.30226 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35127 2.85018 0.24082 2.79798 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.35102 2.84993 0.24090 2.79761 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.33699 2.83635 0.24517 2.77782 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.34391 2.84305 0.24305 2.78757 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.26993 2.29356 2.77025 0.31044 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.82690 0.35087 2.55441 1.83892 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.80869 0.35388 2.54694 1.83613 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.26993 2.29356 2.77025 0.31044 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.91324 2.28591 1.06752 1.87577 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23314 2.86904 2.63013 2.53664 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31012 3.12764 0.23594 2.70159 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.31012 3.12764 0.23594 2.70159 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.26993 2.29356 2.77025 0.31044 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.11349 2.72289 0.30326 2.58904 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.26993 2.29356 2.77025 0.31044 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.11597 2.72575 0.30221 2.59285 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.26993 2.29356 2.77025 0.31044 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.01384 0.28182 2.67918 2.05676 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 3.01456 0.28172 2.67946 2.05690 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.26993 2.29356 2.77025 0.31044 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.01509 0.28165 2.67967 2.05700 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.01630 0.28149 2.68015 2.05724 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53467 1.78817 2.17055 0.44733 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.11455 2.72411 0.30281 2.59067 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.02173 0.28077 2.68228 2.05829 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.02434 0.28042 2.68330 2.05880 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.40084 0.31888 2.96435 2.03410 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53256 1.78807 2.16992 0.44773 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.01494 0.28167 2.67961 2.05697 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.01623 0.28150 2.68012 2.05722 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.53473 1.78818 2.17057 0.44732 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.53592 1.78823 2.17092 0.44709 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.11557 2.72528 0.30238 2.59223 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.02711 0.28006 2.68438 2.05933 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.54305 1.78857 2.17305 0.44575 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.12125 2.73180 0.30001 2.60093 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.66081 1.60271 2.33508 0.45894 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //