INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1822 ACC RF03368 DESC mir-1822 microRNA precursor family STATES 187 NODES 42 CLEN 61 W 83 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 10:41:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03368/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.358398 CKSUM 328031250 NULL 0.000 0.000 0.000 0.000 GA 73.00 TC 75.60 NC 71.10 EFP7GF -9.7259 0.71932 ECMLC 0.67853 -4.85273 3.74221 1600000 409219 0.002932 ECMGC 0.44249 -15.84603 -2.78980 1600000 129155 0.003097 ECMLI 0.65295 -3.85878 4.69077 1600000 318850 0.003764 ECMGI 0.47576 -11.03823 0.24882 1600000 85940 0.004654 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 110 -7.017 -8.263 -0.073 -4.716 IL 1 1 2 1 4 1 10 84 111 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 84 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - U - - MR 3 2 3 5 3 1 13 83 110 -8.500 -0.017 -6.817 -1.777 -1.723 -2.524 1.692 D 4 2 3 5 3 0 6 81 108 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 11 83 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - C - - MR 6 5 3 8 5 1 13 82 109 -7.229 -0.035 -7.045 -7.257 -8.148 -2.121 1.712 -2.952 -1.459 D 7 5 3 8 5 0 5 80 108 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 82 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 A U - - MP 9 8 3 13 6 2 14 81 108 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.078 -3.039 -4.072 3.489 -4.557 -5.651 -0.238 -4.095 -3.955 0.769 -4.517 -0.471 -0.654 -4.788 -2.178 -2.891 ML 10 8 3 13 6 1 7 79 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 79 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 76 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 80 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 80 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 G C - - MP 15 14 6 19 6 2 13 79 106 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 16 14 6 19 6 1 6 77 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 77 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 74 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 78 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 78 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 u a - - MP 21 20 6 25 6 2 13 77 104 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -3.323 -3.375 -3.311 0.141 0.463 -3.969 1.695 -3.145 -3.337 0.265 -3.784 -1.562 2.802 -3.537 -0.268 -2.300 ML 22 20 6 25 6 1 6 75 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 75 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 72 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 76 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 76 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 59 c g - - MP 27 26 6 31 6 2 12 75 102 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -3.629 -3.631 -3.537 0.026 -2.543 -4.125 2.238 -3.242 -3.557 0.214 -3.961 -1.707 1.858 -3.791 2.066 -2.464 ML 28 26 6 31 6 1 5 73 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 73 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 70 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 74 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 74 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 58 U A - - MP 33 32 6 37 6 2 11 73 100 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.564 -4.397 -4.360 -0.667 -3.225 -4.889 1.109 -3.946 -4.362 -0.462 -4.716 -2.284 3.480 -4.700 -0.893 -3.145 ML 34 32 6 37 6 1 5 71 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 71 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 68 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 72 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 72 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 a u - - MP 39 38 6 43 6 2 10 71 98 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -2.690 -2.605 -2.791 2.387 0.282 -3.606 1.463 -2.910 -2.835 1.038 -3.352 -0.749 1.043 -2.970 -0.374 -1.877 ML 40 38 6 43 6 1 4 69 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 69 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 66 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 70 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 70 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 U A - - MP 45 44 6 49 6 2 9 69 96 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.564 -4.397 -4.360 -0.667 -3.225 -4.889 1.109 -3.946 -4.362 -0.462 -4.716 -2.284 3.480 -4.700 -0.893 -3.145 ML 46 44 6 49 6 1 4 67 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 67 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 64 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 68 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 68 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 55 C G - - MP 51 50 6 55 6 2 7 67 94 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.890 -4.826 -4.522 -1.030 -3.169 -4.888 3.644 -4.013 -4.584 -0.833 -4.806 -2.779 0.308 -4.936 -0.885 -3.413 ML 52 50 6 55 6 1 3 65 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 65 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 63 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 66 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 66 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 C G - - MP 57 56 6 61 4 2 5 65 92 -7.017 -8.263 -0.073 -4.716 -3.982 -3.921 -3.797 -0.125 -2.627 -4.316 3.074 -3.372 -3.808 0.101 -4.167 -1.876 1.866 -4.090 -0.289 -2.655 ML 58 56 6 61 4 1 2 64 91 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 64 91 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 62 89 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 3 64 91 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 64 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - g - - MR 63 62 6 65 5 1 5 63 90 -7.229 -0.035 -7.045 -7.257 -8.148 -0.443 0.051 0.596 -0.481 D 64 62 6 65 5 0 0 61 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 3 63 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 52 a u - - MP 66 65 3 70 6 2 6 62 89 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -2.967 -2.450 -3.057 2.094 -3.013 -3.917 1.631 -3.243 -3.090 1.683 -3.585 0.853 0.807 -3.202 -0.767 -2.045 ML 67 65 3 70 6 1 1 60 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 60 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 57 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 61 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 61 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 51 G C - - MP 72 71 6 76 6 2 5 60 87 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 73 71 6 76 6 1 1 58 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 58 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 56 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 59 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 59 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 50 G C - - MP 78 77 6 82 4 2 3 58 85 -7.114 -7.321 -0.047 -5.735 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 79 77 6 82 4 1 1 57 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 57 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 55 83 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 1 58 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 58 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - A - - - ML 84 83 6 86 3 1 2 56 83 -8.119 -0.018 -6.773 1.778 -2.685 -2.286 -2.259 D 85 83 6 86 3 0 0 54 82 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 57 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 87 86 3 89 3 1 1 55 82 -8.500 -0.017 -6.817 1.778 -2.685 -2.286 -2.259 D 88 86 3 89 3 0 0 53 81 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 55 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - C - - MR 90 89 3 92 3 1 1 54 81 -8.500 -0.017 -6.817 -2.121 1.712 -2.952 -1.459 D 91 89 3 92 3 0 0 52 79 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 54 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - G - - MR 93 92 3 95 5 1 1 53 80 -7.229 -0.035 -7.045 -7.257 -8.148 -1.908 -3.176 1.788 -2.564 D 94 92 3 95 5 0 0 51 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 53 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 47 A U - - MP 96 95 3 100 6 2 2 52 79 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -3.221 -2.832 -3.289 3.079 -3.309 -4.314 0.603 0.031 -3.327 0.851 -3.865 -0.678 0.256 -3.598 -1.202 -2.341 ML 97 95 3 100 6 1 1 50 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 50 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 47 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 51 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 51 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 46 G C - - MP 102 101 6 106 6 2 2 50 77 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 103 101 6 106 6 1 1 48 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 48 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 46 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 49 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 49 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 45 C G - - MP 108 107 6 112 4 2 2 48 75 -7.114 -7.321 -0.047 -5.735 -4.890 -4.826 -4.522 -1.030 -3.169 -4.888 3.644 -4.013 -4.584 -0.833 -4.806 -2.779 0.308 -4.936 -0.885 -3.413 ML 109 107 6 112 4 1 1 47 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 47 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 45 73 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 48 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 48 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 114 113 6 116 3 1 1 46 73 -8.119 -0.018 -6.773 -1.777 -1.723 -2.524 1.692 D 115 113 6 116 3 0 0 44 71 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 47 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - - - ML 117 116 3 119 5 1 1 45 72 -7.229 -0.035 -7.045 -7.257 -8.148 1.778 -2.685 -2.286 -2.259 D 118 116 3 119 5 0 0 43 71 -4.959 -0.803 -4.221 -2.596 -2.508 IL 119 119 3 119 5 1 1 45 72 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 44 U A - - MP 120 119 3 124 6 2 2 44 71 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.564 -4.397 -4.360 -0.667 -3.225 -4.889 1.109 -3.946 -4.362 -0.462 -4.716 -2.284 3.480 -4.700 -0.893 -3.145 ML 121 119 3 124 6 1 1 42 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 42 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 39 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 43 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 43 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 43 C G - - MP 126 125 6 130 6 2 2 42 69 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -4.890 -4.826 -4.522 -1.030 -3.169 -4.888 3.644 -4.013 -4.584 -0.833 -4.806 -2.779 0.308 -4.936 -0.885 -3.413 ML 127 125 6 130 6 1 1 40 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 40 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 37 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 41 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 41 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 42 G C - - MP 132 131 6 136 6 2 2 40 67 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 133 131 6 136 6 1 1 38 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 38 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 36 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 39 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 39 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 41 G C - - MP 138 137 6 142 4 2 2 38 65 -7.017 -8.263 -0.073 -4.716 -5.048 -3.241 -5.182 -0.008 -5.662 -4.811 -0.950 -5.441 -4.522 3.704 -4.838 -0.954 -1.328 -4.667 -3.005 -4.054 ML 139 137 6 142 4 1 1 37 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 37 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 35 62 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 37 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 37 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 40 - A - - MR 144 143 6 146 5 1 1 36 63 -7.229 -0.035 -7.045 -7.257 -8.148 1.134 -1.179 -1.250 -0.084 D 145 143 6 146 5 0 0 34 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 36 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 39 c g - - MP 147 146 3 151 6 2 2 35 62 -9.173 -9.112 -0.020 -7.889 -8.169 -8.564 -2.509 -2.562 -2.639 1.521 -0.304 -3.455 2.055 -2.730 -2.666 0.951 -3.204 -0.823 1.716 -2.792 -0.121 -1.713 ML 148 146 3 151 6 1 1 33 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 33 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 31 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 34 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 34 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 38 c g - - MP 153 152 6 157 4 2 2 33 60 -7.114 -7.321 -0.047 -5.735 -3.067 -3.091 -3.107 0.396 -2.414 -3.817 2.603 0.400 -3.125 0.542 -3.601 -1.271 1.767 -3.304 -0.194 -2.109 ML 154 152 6 157 4 1 1 32 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 31 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 30 58 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 33 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 33 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - u - - - ML 159 158 6 161 3 1 1 31 58 -8.119 -0.018 -6.773 0.171 -0.915 0.161 0.294 D 160 158 6 161 3 0 0 29 56 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 32 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - a - - - ML 162 161 3 164 3 1 1 30 57 -8.119 -0.018 -6.773 0.542 -0.459 0.071 -0.384 D 163 161 3 164 3 0 0 28 55 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 31 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 165 164 3 167 3 1 1 28 56 -8.119 -0.018 -6.773 1.329 -1.683 -0.453 -1.165 D 166 164 3 167 3 0 0 27 54 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - c - - - ML 168 167 3 170 3 1 1 27 55 -8.119 -0.018 -6.773 -0.853 0.680 -1.657 0.611 D 169 167 3 170 3 0 0 26 53 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - u - - - ML 171 170 3 173 3 1 1 26 54 -8.119 -0.018 -6.773 0.355 -0.844 -0.419 0.502 D 172 170 3 173 3 0 0 25 52 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - U - - - ML 174 173 3 176 3 1 1 25 53 -8.119 -0.018 -6.773 -1.021 -0.374 -1.772 1.289 D 175 173 3 176 3 0 0 23 51 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - U - - - ML 177 176 3 179 3 1 1 24 52 -8.119 -0.018 -6.773 -0.078 -0.978 -1.367 1.109 D 178 176 3 179 3 0 0 22 50 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 26 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - U - - - ML 180 179 3 182 3 1 1 23 51 -3.003 -0.207 -6.773 -0.078 -0.978 -1.367 1.109 D 181 179 3 182 3 0 0 19 47 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 53 -0.964 -1.126 -5.097 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.790 -0.390 -0.408 -0.407 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1822 ACC RF03368 DESC mir-1822 microRNA precursor family LENG 61 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 10:41:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03368/CM NSEQ 5 EFFN 3.745117 CKSUM 328031250 STATS LOCAL MSV -7.9335 0.71932 STATS LOCAL VITERBI -8.6035 0.71932 STATS LOCAL FORWARD -3.4239 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42714 1.34871 1.36353 1.40783 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 0.00000 * 1 0.17087 3.50659 2.36735 3.40105 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 2 2.96255 3.80065 0.10290 3.74067 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 3 2.86290 1.22139 2.68839 0.54458 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 4 2.86600 1.20208 2.66264 0.55732 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 5 3.68137 2.46417 3.50553 0.15117 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 6 0.77970 1.33799 2.02316 1.91837 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 7 3.67870 2.46388 3.50410 0.15133 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 8 3.79600 0.13150 3.64195 2.59617 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 9 2.95437 0.51310 2.73098 1.25845 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 10 1.07669 1.55953 1.16654 1.98340 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 11 2.95470 3.78936 0.10404 3.72541 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 12 2.95783 3.79386 0.10358 3.73148 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 13 0.08424 3.81220 3.48477 3.57466 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 14 0.08424 3.81220 3.48477 3.57466 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 15 0.43376 1.82171 2.12397 2.65035 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 16 2.96571 3.80523 0.10244 3.74687 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 17 3.80792 0.13081 3.64850 2.59846 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 18 3.15971 3.03397 3.69391 0.12266 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 19 0.08424 3.81220 3.48477 3.57466 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 20 3.69953 2.46607 3.51516 0.15012 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 21 3.81331 0.13050 3.65145 2.59949 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 22 2.96478 3.80387 0.10258 3.74503 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 23 2.96332 3.80178 0.10279 3.74219 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 24 1.48829 1.08354 1.89462 1.25362 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 25 2.56125 0.59303 2.36905 1.28528 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 26 1.28472 2.14364 1.21473 1.17359 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 27 0.98341 1.70232 1.28386 1.79131 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 28 0.37673 2.88004 1.71306 2.55812 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 29 2.24921 0.80682 2.83969 0.94213 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 30 1.12220 2.08925 1.68310 1.00824 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 31 2.41847 1.69443 2.94949 0.39323 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 32 1.49427 2.28197 2.56924 0.51599 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 33 1.49427 2.28197 2.56924 0.51599 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19026 1.84822 4.15187 1.12598 0.39206 1.09861 0.40547 34 0.77661 1.64584 1.68927 1.81687 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 35 1.43937 2.54162 0.73695 1.58178 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 36 1.22845 2.06665 1.11648 1.37352 39 g - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 37 0.51090 2.40528 2.47052 1.49047 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 38 3.90525 0.12412 3.64866 2.65118 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 39 3.90571 0.12410 3.64888 2.65126 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 40 2.87717 3.80794 0.11275 3.57071 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 41 0.17195 3.69593 2.29859 3.41864 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 42 2.88279 3.81701 0.11185 3.58080 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 43 3.93169 0.12277 3.66162 2.65602 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 44 2.88729 2.41152 2.54098 0.25385 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 45 3.26426 4.20749 0.07920 3.77055 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 46 3.52936 0.10359 4.08310 2.95217 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 47 3.90878 0.12394 3.65039 2.65183 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 48 3.91527 0.12361 3.65359 2.65302 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 49 2.21734 1.69968 1.44610 0.74893 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 50 1.91306 1.28847 0.83277 1.95306 53 g - - - 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 51 1.39337 2.89684 0.46166 2.71317 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 52 2.87575 3.80565 0.11297 3.56816 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 53 0.17181 3.69749 2.29887 3.42030 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 54 1.48190 2.22229 1.72005 0.72283 57 u - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 55 0.17156 3.70016 2.29934 3.42315 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 56 1.39284 2.82799 0.47671 2.63555 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 57 0.41582 2.85493 1.55456 2.64008 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 58 3.92696 0.12301 3.65931 2.65516 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 59 3.64178 2.73113 3.32456 0.13621 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 60 3.52936 0.10359 4.08310 2.95217 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03198 4.15187 4.15187 1.46634 0.26236 1.09861 0.40547 61 3.15972 3.03397 3.69391 0.12266 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.01612 4.13601 * 1.46634 0.26236 0.00000 * //