INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1842 ACC RF03357 DESC mir-1842 microRNA precursor family STATES 184 NODES 43 CLEN 60 W 76 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 06:09:17 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0000788__mir-1842_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.589844 CKSUM 153741142 NULL 0.000 0.000 0.000 0.000 GA 81.00 TC 84.10 NC 80.60 EFP7GF -7.8566 0.71931 ECMLC 0.61977 -6.78836 3.18791 1600000 581317 0.002064 ECMGC 0.43301 -18.05570 -3.45136 1600000 223068 0.001793 ECMLI 0.57477 -5.36951 4.22032 1600000 297162 0.004038 ECMGI 0.44322 -13.49939 -0.53714 1600000 125072 0.003198 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -6.802 -7.009 -0.059 -5.423 IL 1 1 2 1 4 1 14 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 13 76 96 -7.829 -0.023 -6.483 -1.240 -1.281 -1.960 1.540 D 4 2 3 5 3 0 8 75 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 12 75 95 -8.229 -0.020 -6.546 -1.291 -2.463 1.647 -1.849 D 7 5 3 8 3 0 7 74 93 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 11 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 60 - G - - MR 9 8 3 11 3 1 12 74 94 -8.229 -0.020 -6.546 -1.291 -2.463 1.647 -1.849 D 10 8 3 11 3 0 5 72 92 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - U - - MR 12 11 3 14 3 1 11 73 93 -8.229 -0.020 -6.546 -1.240 -1.281 -1.960 1.540 D 13 11 3 14 3 0 4 71 91 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - U - - MR 15 14 3 17 3 1 11 72 92 -8.229 -0.020 -6.546 -1.240 -1.281 -1.960 1.540 D 16 14 3 17 3 0 4 70 90 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - G - - MR 18 17 3 20 5 1 10 71 91 -6.976 -0.042 -6.791 -7.004 -7.895 -1.291 -2.463 1.647 -1.849 D 19 17 3 20 5 0 3 70 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 7 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 56 G C - - MP 21 20 3 25 6 2 11 70 90 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 22 20 3 25 6 1 5 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 1 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 55 C G - - MP 27 26 6 31 6 2 11 68 88 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 28 26 6 31 6 1 4 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 54 u g - - MP 33 32 6 37 6 2 10 66 86 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.820 -3.729 -3.584 -0.091 -2.430 -4.054 1.849 -3.175 -3.622 0.150 -3.943 -1.738 1.040 -3.930 2.811 -2.507 ML 34 32 6 37 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 53 C G - - MP 39 38 6 43 6 2 8 64 84 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 40 38 6 43 6 1 4 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 52 U A - - MP 45 44 6 49 6 2 7 62 82 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.916 -3.731 -3.784 -0.047 -2.787 -4.373 1.534 -3.463 -3.792 0.252 -4.178 -1.639 3.179 -4.077 -0.470 -2.642 ML 46 44 6 49 6 1 3 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 4 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 51 G C - - MP 51 50 6 55 4 2 5 60 80 -6.802 -7.009 -0.059 -5.423 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 52 50 6 55 4 1 2 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 4 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 3 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - u - - - ML 57 56 6 59 3 1 4 57 77 -7.829 -0.023 -6.483 -0.600 0.409 -1.364 0.699 D 58 56 6 59 3 0 0 56 76 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - G - - - ML 60 59 3 62 3 1 3 56 76 -8.229 -0.020 -6.546 -1.291 -2.463 1.647 -1.849 D 61 59 3 62 3 0 0 55 75 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 2 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - U - - MR 63 62 3 65 3 1 2 55 75 -8.229 -0.020 -6.546 -1.240 -1.281 -1.960 1.540 D 64 62 3 65 3 0 0 54 73 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - G - - MR 66 65 3 68 5 1 2 54 74 -6.976 -0.042 -6.791 -7.004 -7.895 -1.291 -2.463 1.647 -1.849 D 67 65 3 68 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 48 A U - - MP 69 68 3 73 6 2 3 53 73 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.576 -2.665 -3.609 3.171 -3.841 -4.886 0.445 -3.664 -3.511 1.312 -4.048 -0.178 0.026 -4.109 -1.497 -2.457 ML 70 68 3 73 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 47 G C - - MP 75 74 6 79 6 2 3 51 71 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 76 74 6 79 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 46 G C - - MP 81 80 6 85 6 2 3 49 69 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 82 80 6 85 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 45 u g - - MP 87 86 6 91 6 2 3 47 67 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.820 -3.729 -3.584 -0.091 -2.430 -4.054 1.849 -3.175 -3.622 0.150 -3.943 -1.738 1.040 -3.930 2.811 -2.507 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 44 C G - - MP 93 92 6 97 4 2 2 45 65 -6.802 -7.009 -0.059 -5.423 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 94 92 6 97 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - G - - - ML 99 98 6 101 3 1 1 43 62 -8.229 -0.020 -6.546 0.120 -1.494 1.014 -0.893 D 100 98 6 101 3 0 0 42 61 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 43 - A - - MR 102 101 3 104 5 1 1 42 61 -6.976 -0.042 -6.791 -7.004 -7.895 1.653 -2.101 -1.760 -1.617 D 103 101 3 104 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 42 G C - - MP 105 104 3 109 6 2 2 41 60 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 106 104 3 109 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 41 C G - - MP 111 110 6 115 6 2 2 39 58 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 112 110 6 115 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 40 U A - - MP 117 116 6 121 6 2 2 37 56 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.916 -3.731 -3.784 -0.047 -2.787 -4.373 1.534 -3.463 -3.792 0.252 -4.178 -1.639 3.179 -4.077 -0.470 -2.642 ML 118 116 6 121 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 39 C G - - MP 123 122 6 127 6 2 2 35 54 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 124 122 6 127 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 38 A U - - MP 129 128 6 133 6 2 2 33 52 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.576 -2.665 -3.609 3.171 -3.841 -4.886 0.445 -3.664 -3.511 1.312 -4.048 -0.178 0.026 -4.109 -1.497 -2.457 ML 130 128 6 133 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 37 A U - - MP 135 134 6 139 4 2 2 31 50 -6.802 -7.009 -0.059 -5.423 -3.576 -2.665 -3.609 3.171 -3.841 -4.886 0.445 -3.664 -3.511 1.312 -4.048 -0.178 0.026 -4.109 -1.497 -2.457 ML 136 134 6 139 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - G - - - ML 141 140 6 143 3 1 1 28 47 -8.229 -0.020 -6.546 -1.291 -2.463 1.647 -1.849 D 142 140 6 143 3 0 0 27 46 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 36 - A - - MR 144 143 3 146 5 1 1 27 46 -6.976 -0.042 -6.791 -7.004 -7.895 1.100 -1.329 -0.197 -0.771 D 145 143 3 146 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 35 g u - - MP 147 146 3 151 6 2 2 26 45 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.449 -2.285 -3.600 1.231 -4.178 -4.909 0.182 -3.648 -3.311 1.583 -3.824 2.882 -0.179 -4.148 -1.759 -2.339 ML 148 146 3 151 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 34 U A - - MP 153 152 6 157 4 2 2 24 43 -6.802 -7.009 -0.059 -5.423 -3.916 -3.731 -3.784 -0.047 -2.787 -4.373 1.534 -3.463 -3.792 0.252 -4.178 -1.639 3.179 -4.077 -0.470 -2.642 ML 154 152 6 157 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - G - - - ML 159 158 6 161 3 1 1 21 40 -7.829 -0.023 -6.483 -1.291 -2.463 1.647 -1.849 D 160 158 6 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - G - - - ML 162 161 3 164 3 1 1 20 39 -7.829 -0.023 -6.483 -1.291 -2.463 1.647 -1.849 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - G - - - ML 165 164 3 167 3 1 1 19 38 -7.829 -0.023 -6.483 -1.291 -2.463 1.647 -1.849 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - U - - - ML 168 167 3 170 3 1 1 18 36 -7.829 -0.023 -6.483 -1.240 -1.281 -1.960 1.540 D 169 167 3 170 3 0 0 17 36 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - C - - - ML 171 170 3 173 3 1 1 16 35 -7.829 -0.023 -6.483 -1.418 1.524 -2.229 -0.898 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - U - - - ML 174 173 3 176 3 1 1 15 33 -7.829 -0.023 -6.483 -1.240 -1.281 -1.960 1.540 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 177 176 3 179 3 1 1 13 32 -7.829 -0.023 -6.483 -1.291 -2.463 1.647 -1.849 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - G - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -1.291 -2.463 1.647 -1.849 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1842 ACC RF03357 DESC mir-1842 microRNA precursor family LENG 60 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 06:09:17 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 2.230469 CKSUM 153741142 STATS LOCAL MSV -8.3688 0.71931 STATS LOCAL VITERBI -8.6978 0.71931 STATS LOCAL FORWARD -3.7152 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.80183 1.55155 0.97809 1.39815 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 0.00000 * 1 2.55932 2.53194 3.07461 0.22699 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 2 2.64436 3.51440 0.15820 3.08992 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 3 2.54902 3.18265 0.17876 3.12223 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 4 3.14096 0.25413 2.90893 2.06644 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 5 2.89164 1.55025 2.67521 0.41033 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 6 3.14120 0.25410 2.90905 2.06648 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 7 2.90901 1.85848 2.65270 0.32975 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 8 2.54984 3.18360 0.17857 3.12356 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 9 1.93821 1.03687 2.48520 0.87187 9 u - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 10 2.64436 3.51440 0.15820 3.08992 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 11 0.36531 2.70579 1.78487 2.63966 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 12 2.55054 3.18441 0.17840 3.12470 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 13 2.55085 3.18476 0.17833 3.12519 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 14 2.89135 1.55026 2.67509 0.41037 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 15 3.14043 0.25419 2.90869 2.06635 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 16 1.33849 2.60449 0.59280 2.19787 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 17 2.54919 3.18285 0.17872 3.12252 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 18 3.14117 0.25411 2.90903 2.06647 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 19 2.91001 1.85853 2.65313 0.32963 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 20 3.14129 0.25409 2.90909 2.06649 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 21 0.36510 2.70653 1.78500 2.64074 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 22 0.36518 2.70627 1.78495 2.64037 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 23 2.64436 3.51440 0.15820 3.08992 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 24 1.89472 2.84258 0.32116 2.71724 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 25 2.90947 1.85850 2.65290 0.32969 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 26 2.64436 3.51440 0.15820 3.08992 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 27 2.64436 3.51440 0.15820 3.08992 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 28 2.64436 3.51440 0.15820 3.08992 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 29 2.55932 2.53194 3.07461 0.22699 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 30 2.78062 0.21511 3.35594 2.33640 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 31 2.55932 2.53194 3.07461 0.22699 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 32 2.64436 3.51440 0.15820 3.08992 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 33 2.64436 3.51440 0.15820 3.08992 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 34 0.37359 2.83881 1.69565 2.66261 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 35 2.94045 1.86317 2.64754 0.32690 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 36 0.55991 2.46421 1.51551 2.08775 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 37 2.86786 2.07274 2.51880 0.30546 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 38 2.86898 2.07286 2.51921 0.30531 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 39 2.34426 3.07755 0.21937 2.90071 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 40 0.37385 2.83769 1.69555 2.66122 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 41 2.34636 3.08036 0.21872 2.90414 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 42 3.34586 0.20928 3.02500 2.25339 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 43 0.16434 3.18513 2.91454 2.88344 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 44 2.34353 3.07658 0.21959 2.89953 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 45 2.08636 2.85233 0.29237 2.63584 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 46 3.33623 0.21018 3.02084 2.25156 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 47 3.34028 0.20980 3.02259 2.25233 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 48 2.87768 2.07382 2.52239 0.30413 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 49 2.64436 3.51440 0.15820 3.08992 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 50 2.55932 2.53194 3.07461 0.22699 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 51 3.32883 0.21089 3.01763 2.25015 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 52 0.37422 2.83611 1.69542 2.65927 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 53 2.34423 3.07752 0.21938 2.90067 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 54 2.08696 2.85321 0.29210 2.63688 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 55 2.34632 3.08031 0.21874 2.90408 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 56 3.34569 0.20929 3.02492 2.25336 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 57 2.64436 3.51440 0.15820 3.08992 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 58 2.55932 2.53194 3.07461 0.22699 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 59 2.55932 2.53194 3.07461 0.22699 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.04272 3.86745 3.86745 1.46634 0.26236 1.09861 0.40547 60 2.64436 3.51440 0.15820 3.08992 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02159 3.84632 * 1.46634 0.26236 0.00000 * //