INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR5291 ACC RF03353 DESC MIR5291 microRNA precursor family STATES 199 NODES 45 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 20:14:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03353/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.555664 CKSUM 690825140 NULL 0.000 0.000 0.000 0.000 GA 54.00 TC 54.00 NC 53.90 EFP7GF -8.3464 0.71919 ECMLC 0.61006 -4.94657 4.62334 1600000 411791 0.002914 ECMGC 0.44019 -13.13361 0.83796 1600000 187504 0.002133 ECMLI 0.58713 -3.34209 5.81178 1600000 259003 0.004633 ECMGI 0.47137 -8.28164 3.91386 1600000 125506 0.003187 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 100 -6.786 -6.993 -0.060 -5.407 IL 1 1 2 1 4 1 11 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 10 81 100 -7.815 -0.023 -6.469 -1.261 -2.428 1.638 -1.813 D 4 2 3 5 3 0 5 79 99 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 9 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 9 79 99 -7.815 -0.023 -6.469 1.646 -2.072 -1.734 -1.586 D 7 5 3 8 3 0 4 78 98 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 9 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 8 78 98 -8.215 -0.021 -6.533 -1.215 -1.260 -1.933 1.531 D 10 8 3 11 3 0 3 77 97 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 7 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - A - - MR 12 11 3 14 3 1 8 77 97 -8.215 -0.021 -6.533 1.646 -2.072 -1.734 -1.586 D 13 11 3 14 3 0 2 76 95 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 6 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - U - - MR 15 14 3 17 3 1 7 76 96 -8.215 -0.021 -6.533 -1.215 -1.260 -1.933 1.531 D 16 14 3 17 3 0 1 75 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 6 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - a - - MR 18 17 3 20 3 1 7 75 95 -8.215 -0.021 -6.533 0.961 -1.273 0.034 -0.700 D 19 17 3 20 3 0 1 74 93 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 5 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - U - - MR 21 20 3 23 5 1 6 74 94 -6.964 -0.043 -6.779 -6.991 -7.883 -1.215 -1.260 -1.933 1.531 D 22 20 3 23 5 0 0 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 3 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 61 g u - - MP 24 23 3 28 6 2 8 73 93 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.431 -2.276 -3.581 1.240 -4.145 -4.877 0.211 -3.632 -3.297 1.607 -3.809 2.857 -0.150 -4.119 -1.729 -2.324 ML 25 23 3 28 6 1 2 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 2 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 0 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 3 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 3 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 60 g u - - MP 30 29 6 34 6 2 7 71 91 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.223 -2.237 -3.349 2.074 -3.866 -4.547 0.389 -3.512 -3.196 1.742 -3.718 2.204 0.112 -3.733 -1.514 -2.183 ML 31 29 6 34 6 1 2 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 2 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 3 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 3 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 59 A U - - MP 36 35 6 40 6 2 6 69 89 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 37 35 6 40 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 2 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 3 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 58 U A - - MP 42 41 6 46 6 2 5 67 87 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.889 -3.702 -3.759 -0.021 -2.769 -4.350 1.552 -3.442 -3.768 0.284 -4.156 -1.611 3.162 -4.051 -0.453 -2.620 ML 43 41 6 46 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 57 C G - - MP 48 47 6 52 4 2 3 65 85 -6.786 -6.993 -0.060 -5.407 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 49 47 6 52 4 1 1 66 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 1 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 0 64 84 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 2 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 1 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - A - - - ML 54 53 6 56 3 1 2 63 82 -7.815 -0.023 -6.469 1.646 -2.072 -1.734 -1.586 D 55 53 6 56 3 0 0 62 81 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - A - - - ML 57 56 3 59 3 1 1 62 81 -8.215 -0.021 -6.533 1.646 -2.072 -1.734 -1.586 D 58 56 3 59 3 0 0 61 80 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 56 - G - - MR 60 59 3 62 5 1 1 61 80 -6.964 -0.043 -6.779 -6.991 -7.883 -1.261 -2.428 1.638 -1.813 D 61 59 3 62 5 0 0 60 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 55 A U - - MP 63 62 3 67 6 2 2 60 79 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 64 62 3 67 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 54 U A - - MP 69 68 6 73 6 2 2 58 77 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.889 -3.702 -3.759 -0.021 -2.769 -4.350 1.552 -3.442 -3.768 0.284 -4.156 -1.611 3.162 -4.051 -0.453 -2.620 ML 70 68 6 73 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 53 C G - - MP 75 74 6 79 6 2 2 56 75 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 76 74 6 79 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 52 C G - - MP 81 80 6 85 6 2 2 54 73 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 82 80 6 85 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 51 A U - - MP 87 86 6 91 6 2 2 52 71 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 88 86 6 91 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 50 A U - - MP 93 92 6 97 6 2 2 50 69 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 94 92 6 97 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 49 U A - - MP 99 98 6 103 6 2 2 48 67 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.889 -3.702 -3.759 -0.021 -2.769 -4.350 1.552 -3.442 -3.768 0.284 -4.156 -1.611 3.162 -4.051 -0.453 -2.620 ML 100 98 6 103 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 48 C G - - MP 105 104 6 109 6 2 2 46 65 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 106 104 6 109 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 47 C G - - MP 111 110 6 115 6 2 2 44 63 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 112 110 6 115 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 46 A U - - MP 117 116 6 121 6 2 2 42 61 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 118 116 6 121 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 45 U A - - MP 123 122 6 127 6 2 2 40 59 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.889 -3.702 -3.759 -0.021 -2.769 -4.350 1.552 -3.442 -3.768 0.284 -4.156 -1.611 3.162 -4.051 -0.453 -2.620 ML 124 122 6 127 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 44 u g - - MP 129 128 6 133 4 2 2 38 57 -6.786 -6.993 -0.060 -5.407 -3.792 -3.700 -3.562 -0.065 -2.418 -4.038 1.860 -3.160 -3.600 0.182 -3.924 -1.710 1.056 -3.905 2.788 -2.487 ML 130 128 6 133 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - A - - - ML 135 134 6 137 3 1 1 35 54 -7.815 -0.023 -6.469 1.646 -2.072 -1.734 -1.586 D 136 134 6 137 3 0 0 34 53 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - A - - - ML 138 137 3 140 3 1 1 34 53 -8.215 -0.021 -6.533 1.646 -2.072 -1.734 -1.586 D 139 137 3 140 3 0 0 33 52 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - G - - MR 141 140 3 143 3 1 1 33 52 -8.215 -0.021 -6.533 -1.261 -2.428 1.638 -1.813 D 142 140 3 143 3 0 0 31 50 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 42 - U - - MR 144 143 3 146 3 1 1 32 51 -8.215 -0.021 -6.533 -1.215 -1.260 -1.933 1.531 D 145 143 3 146 3 0 0 30 49 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - A - - MR 147 146 3 149 5 1 1 31 50 -6.964 -0.043 -6.779 -6.991 -7.883 1.646 -2.072 -1.734 -1.586 D 148 146 3 149 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 40 C G - - MP 150 149 3 154 6 2 2 30 49 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -4.251 -4.129 -3.990 -0.391 -2.777 -4.440 3.447 -3.557 -4.031 -0.102 -4.322 -2.073 0.765 -4.339 -0.478 -2.882 ML 151 149 3 154 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 39 A U - - MP 156 155 6 160 6 2 2 28 47 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 157 155 6 160 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 38 A U - - MP 162 161 6 166 6 2 2 26 45 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 163 161 6 166 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 37 A U - - MP 168 167 6 172 6 2 2 24 43 -9.048 -8.987 -0.022 -7.764 -8.043 -8.438 -3.554 -2.649 -3.588 3.152 -3.811 -4.854 0.475 -3.644 -3.492 1.336 -4.027 -0.167 0.056 -4.080 -1.468 -2.438 ML 169 167 6 172 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 36 u g - - MP 174 173 6 178 4 2 2 22 41 -6.786 -6.993 -0.060 -5.407 -3.792 -3.700 -3.562 -0.065 -2.418 -4.038 1.860 -3.160 -3.600 0.182 -3.924 -1.710 1.056 -3.905 2.788 -2.487 ML 175 173 6 178 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - u - - - ML 180 179 6 182 3 1 1 19 38 -7.815 -0.023 -6.469 0.198 -0.761 -1.058 0.834 D 181 179 6 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - u - - - ML 183 182 3 185 3 1 1 18 36 -7.815 -0.023 -6.469 0.206 -0.761 -1.055 0.828 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - U - - - ML 186 185 3 188 3 1 1 16 35 -7.815 -0.023 -6.469 -1.215 -1.260 -1.933 1.531 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - U - - - ML 189 188 3 191 3 1 1 15 33 -7.815 -0.023 -6.469 -1.215 -1.260 -1.933 1.531 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - U - - - ML 192 191 3 194 3 1 1 13 32 -7.815 -0.023 -6.469 -1.215 -1.260 -1.933 1.531 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - U - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.215 -1.260 -1.933 1.531 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR5291 ACC RF03353 DESC MIR5291 microRNA precursor family LENG 65 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 20:14:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03353/CM NSEQ 3 EFFN 2.288086 CKSUM 690825140 STATS LOCAL MSV -8.5388 0.71919 STATS LOCAL VITERBI -8.9242 0.71919 STATS LOCAL FORWARD -3.9893 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25865 1.85431 1.46190 1.11594 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 0.00000 * 1 2.67376 3.54796 0.15289 3.12349 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 2 0.15934 3.21354 2.94014 2.91475 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 3 2.58583 2.55392 3.10225 0.22072 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 4 1.90731 2.87177 0.31386 2.74424 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 5 1.16172 2.72390 0.61012 2.54911 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 6 0.35275 2.74093 1.80939 2.67395 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 7 2.94079 1.88150 2.68771 0.31914 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 8 3.16905 0.24690 2.94093 2.08813 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 9 0.15934 3.21354 2.94014 2.91475 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 10 0.15934 3.21354 2.94014 2.91475 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 11 0.35292 2.74029 1.80928 2.67301 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 12 2.94132 1.88152 2.68794 0.31907 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 13 3.17084 0.24669 2.94177 2.08844 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 14 3.17022 0.24676 2.94148 2.08833 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 15 0.35283 2.74063 1.80934 2.67351 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 16 0.35291 2.74035 1.80929 2.67310 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 17 2.93893 1.88140 2.68690 0.31937 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 18 3.16667 0.24717 2.93981 2.08772 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 19 3.16601 0.24724 2.93949 2.08761 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 20 0.35314 2.73950 1.80914 2.67186 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 21 2.93706 1.88131 2.68609 0.31960 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 22 2.91333 1.56398 2.70284 0.40139 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 23 0.15934 3.21354 2.94014 2.91475 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 24 0.15934 3.21354 2.94014 2.91475 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 25 3.16604 0.24724 2.93951 2.08761 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 26 0.35282 2.74065 1.80934 2.67353 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 27 0.35276 2.74086 1.80938 2.67385 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 28 0.35279 2.74076 1.80936 2.67369 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 29 2.91654 1.56392 2.70431 0.40100 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 30 1.25882 2.01960 2.23824 0.74096 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 31 1.25192 2.01872 2.23543 0.74597 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 32 2.58583 2.55392 3.10225 0.22072 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 33 2.58583 2.55392 3.10225 0.22072 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 34 2.58583 2.55392 3.10225 0.22072 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 35 2.58583 2.55392 3.10225 0.22072 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 36 2.10301 2.88161 0.28511 2.66022 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 37 2.90260 2.10062 2.55345 0.29447 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 38 2.90446 2.10084 2.55414 0.29422 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 39 2.90692 2.10112 2.55506 0.29390 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 40 2.37009 3.11494 0.21188 2.93582 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 41 0.15934 3.21354 2.94014 2.91475 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 42 2.58583 2.55392 3.10225 0.22072 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 43 2.67376 3.54796 0.15289 3.12349 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 44 2.10148 2.87935 0.28577 2.65759 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 45 0.36266 2.86931 1.71821 2.68748 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 46 2.89736 2.10001 2.55150 0.29516 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 47 2.36391 3.10659 0.21373 2.92569 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 48 2.36422 3.10701 0.21364 2.92620 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 49 0.36240 2.87045 1.71831 2.68888 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 50 2.90021 2.10034 2.55256 0.29479 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 51 2.90139 2.10048 2.55300 0.29463 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 52 2.36643 3.10998 0.21298 2.92980 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 53 2.36739 3.11129 0.21269 2.93139 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 54 0.36151 2.87441 1.71868 2.69375 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 55 2.91080 2.10157 2.55649 0.29340 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 56 2.67376 3.54796 0.15289 3.12349 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 57 2.36559 3.10886 0.21323 2.92844 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 58 0.36203 2.87213 1.71847 2.69094 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 59 2.90458 2.10085 2.55419 0.29421 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 60 2.76729 1.71727 2.52473 0.38930 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 61 2.96709 1.88699 2.67630 0.31718 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 62 2.58583 2.55392 3.10225 0.22072 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 63 0.65484 2.43992 1.32912 2.05106 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 64 2.58583 2.55392 3.10225 0.22072 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.04383 3.84243 3.84243 1.46634 0.26236 1.09861 0.40547 65 0.15934 3.21354 2.94014 2.91475 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02215 3.82076 * 1.46634 0.26236 0.00000 * //