INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3047 ACC RF03339 DESC mir-3047 microRNA precursor family STATES 187 NODES 40 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 02:42:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03339/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.542969 CKSUM 1615455314 NULL 0.000 0.000 0.000 0.000 GA 53.00 TC 53.50 NC 51.80 EFP7GF -6.8324 0.72687 ECMLC 0.63102 -5.42378 3.96463 1600000 448824 0.002674 ECMGC 0.48336 -13.66808 -0.08836 1600000 283594 0.001410 ECMLI 0.61673 -4.19847 4.77155 1600000 303214 0.003958 ECMGI 0.49519 -9.56032 2.48895 1600000 156091 0.002563 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -6.711 -7.956 -0.090 -4.410 IL 1 1 2 1 4 1 1 78 97 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 2 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - C - - MR 3 2 3 5 3 1 3 76 96 -8.210 -0.021 -6.528 -1.372 1.507 -2.181 -0.862 D 4 2 3 5 3 0 0 75 94 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 1 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - A - - MR 6 5 3 8 5 1 2 75 95 -6.959 -0.043 -6.775 -6.987 -7.878 1.643 -2.061 -1.725 -1.575 D 7 5 3 8 5 0 0 74 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 a u - - MP 9 8 3 13 6 2 4 74 94 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.176 -2.254 -3.288 2.310 -3.751 -4.465 0.472 -3.473 -3.175 1.771 -3.704 1.846 0.198 -3.643 -1.422 -2.151 ML 10 8 3 13 6 1 1 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 G C - - MP 15 14 6 19 6 2 3 72 92 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 16 14 6 19 6 1 1 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 G C - - MP 21 20 6 25 6 2 3 70 90 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 22 20 6 25 6 1 1 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 G C - - MP 27 26 6 31 6 2 3 68 88 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 28 26 6 31 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 55 A U - - MP 33 32 6 37 6 2 3 66 86 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 34 32 6 37 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 54 G C - - MP 39 38 6 43 6 2 2 64 84 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 40 38 6 43 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 53 U A - - MP 45 44 6 49 6 2 2 62 82 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 46 44 6 49 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 52 U A - - MP 51 50 6 55 6 2 2 60 80 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 52 50 6 55 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 51 U A - - MP 57 56 6 61 6 2 2 58 78 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 58 56 6 61 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 50 U A - - MP 63 62 6 67 6 2 2 56 76 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 64 62 6 67 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 49 G C - - MP 69 68 6 73 6 2 2 54 74 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 70 68 6 73 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 48 A U - - MP 75 74 6 79 6 2 2 52 72 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 76 74 6 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 47 A U - - MP 81 80 6 85 6 2 2 50 70 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 46 U A - - MP 87 86 6 91 6 2 2 48 68 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 45 G C - - MP 93 92 6 97 6 2 2 46 66 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 44 U A - - MP 99 98 6 103 6 2 2 44 64 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 100 98 6 103 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 43 U A - - MP 105 104 6 109 4 2 2 42 62 -6.780 -6.987 -0.060 -5.401 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 106 104 6 109 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - G - - - ML 111 110 6 113 5 1 1 40 59 -6.959 -0.043 -6.775 -6.987 -7.878 -1.249 -2.414 1.634 -1.799 D 112 110 6 113 5 0 0 38 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 113 113 3 113 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 42 U A - - MP 114 113 3 118 6 2 2 39 58 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 115 113 3 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 41 U A - - MP 120 119 6 124 6 2 2 37 56 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 40 G C - - MP 126 125 6 130 6 2 2 35 54 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 39 u a - - MP 132 131 6 136 6 2 2 33 52 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -2.707 -2.635 -2.785 0.754 -2.335 -3.552 1.706 -2.830 -2.821 1.042 -3.318 -0.781 2.116 -2.965 -0.180 0.955 ML 133 131 6 136 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 38 A U - - MP 138 137 6 142 6 2 2 31 50 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 139 137 6 142 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 37 u a - - MP 144 143 6 148 4 2 2 29 48 -6.780 -6.987 -0.060 -5.401 0.653 -2.282 -2.409 0.945 -2.147 -3.216 1.657 -2.579 -2.454 1.155 -2.981 -0.573 1.930 -2.568 -0.115 -1.541 ML 145 143 6 148 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 150 149 6 152 3 1 1 26 45 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 151 149 6 152 3 0 0 25 44 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 153 152 3 155 3 1 1 25 44 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 154 152 3 155 3 0 0 24 43 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - U - - - ML 156 155 3 158 3 1 1 24 42 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - A - - - ML 159 158 3 161 3 1 1 22 41 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - U - - - ML 162 161 3 164 3 1 1 21 40 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - U - - - ML 165 164 3 167 3 1 1 20 39 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - U - - - ML 168 167 3 170 3 1 1 19 38 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - A - - - ML 171 170 3 173 3 1 1 18 36 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - A - - - ML 174 173 3 176 3 1 1 16 35 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - A - - - ML 177 176 3 179 3 1 1 15 33 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - C - - - ML 180 179 3 182 3 1 1 13 32 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.643 -2.061 -1.725 -1.575 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3047 ACC RF03339 DESC mir-3047 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 02:42:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03339/CM NSEQ 2 EFFN 1.832031 CKSUM 1615455314 STATS LOCAL MSV -8.5013 0.72687 STATS LOCAL VITERBI -9.1532 0.72687 STATS LOCAL FORWARD -3.1817 0.72687 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20561 1.57053 1.51936 1.29570 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.03659 2.42602 0.78965 2.27353 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.41625 2.96407 0.21751 2.90739 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.41781 2.96568 0.21708 2.90971 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.41834 2.96623 0.21693 2.91050 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.46665 2.46911 1.61632 2.41224 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.41829 2.96618 0.21694 2.91043 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.69322 1.70409 2.41088 0.41451 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.69295 1.70408 2.41077 0.41456 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.69269 1.70408 2.41067 0.41460 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.69246 1.70408 2.41059 0.41463 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.41744 2.96531 0.21718 2.90916 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.46685 2.46859 1.61627 2.41143 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.46687 2.46855 1.61627 2.41136 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.69186 1.70407 2.41036 0.41473 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.41710 2.96495 0.21728 2.90865 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.69170 1.70407 2.41029 0.41475 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.69163 1.70407 2.41027 0.41476 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.42633 3.26326 0.20478 2.83790 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.69316 1.70409 2.41085 0.41452 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.69407 1.70410 2.41120 0.41438 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.41878 2.96669 0.21681 2.91116 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.05446 1.49547 1.79017 0.73238 22 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.46665 2.46912 1.61632 2.41225 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.37147 1.50336 1.67363 1.08969 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.20644 2.97775 2.72790 2.65552 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.20644 2.97775 2.72790 2.65552 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.36828 2.37422 2.87429 0.27864 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20644 2.97775 2.72790 2.65552 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.36828 2.37422 2.87429 0.27864 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.36828 2.37422 2.87429 0.27864 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.36828 2.37422 2.87429 0.27864 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.20644 2.97775 2.72790 2.65552 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.20644 2.97775 2.72790 2.65552 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.20644 2.97775 2.72790 2.65552 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53031 0.27807 3.09922 2.13678 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.20644 2.97775 2.72790 2.65552 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.94157 1.84465 1.32093 1.68732 37 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.64041 1.88081 2.28330 0.39415 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.17000 1.96148 1.32201 1.26449 39 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.11676 0.25533 2.79435 2.12124 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47232 2.58674 1.54081 2.44214 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.47326 2.58375 1.54077 2.43813 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.47167 2.58884 1.54084 2.44495 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.47166 2.58887 1.54084 2.44499 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.11944 0.25501 2.79545 2.12176 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.47163 2.58895 1.54084 2.44510 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.63981 1.88076 2.28311 0.39425 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.63997 1.88077 2.28316 0.39422 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.12046 0.25489 2.79587 2.12196 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.47154 2.58926 1.54085 2.44551 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.47150 2.58938 1.54085 2.44568 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.47145 2.58953 1.54085 2.44588 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.47139 2.58971 1.54085 2.44613 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.12365 0.25451 2.79717 2.12258 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.64256 1.88096 2.28400 0.39378 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.12617 0.25421 2.79820 2.12307 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.12790 0.25400 2.79891 2.12340 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.13006 0.25375 2.79979 2.12382 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.50094 1.53721 2.23458 0.51755 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.20644 2.97775 2.72790 2.65552 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.53031 0.27807 3.09922 2.13678 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //